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1,006 results • Page
3 of 21
Sort: replies
Rank
Views
Votes
Replies
3
votes
7
replies
519
views
Integration of transcriptomics and proteomics: difficult matching names
rna-seq
tmt
nomenclature
proteomics
18 days ago by
ntsopoul
▴ 60
0
votes
7
replies
533
views
Post-imputation plot
michigan-imputation-server
quality-control
updated 2 days ago by
LChart
3.9k • written 5 days ago by
kl
▴ 10
2
votes
7
replies
538
views
STARsolo ; Reads are NOT mapped to transcriptome
STARsolo
updated 24 days ago by
GenoMax
142k • written 26 days ago by
gdfsnkfns
• 0
1
vote
7
replies
432
views
Downsampling long-read BAM files
nanopore
BAM
QC
ONT
downsampling
2 days ago by
eebloom
▴ 80
7
votes
7
replies
5.9k
views
6 follow
How to know synonymous and non-synonymous SNPs from transcriptome sequencing
RNA-Seq
SNP
updated 9 days ago by
rohitsatyam102
▴ 850 • written 6.1 years ago by
smallfish
▴ 10
0
votes
7
replies
6.1k
views
Pre-processing of RNA-Seq data for WGCNA
RNA-Seq
WGCNA
removeBatchEffect
DESeq2
updated 18 days ago by
Ram
43k • written 7.6 years ago by
gokce.ouz
▴ 70
5
votes
7
replies
2.7k
views
DESeq2 for differential gene expression on GTEx dataset
differential-gene-expression
RNA-Seq
GTex
DESeq2
updated 25 days ago by
Ram
43k • written 6.5 years ago by
vikram
▴ 10
4
votes
7
replies
590
views
DESeq2 Multifactor Design
RNA-seq
DESeq2
updated 21 days ago by
Ram
43k • written 22 days ago by
AHerik
▴ 20
3
votes
7
replies
1.0k
views
Can I use batch effect correction "by parts"?
ComBat
RNA-Seq
batch-effect
updated 17 days ago by
Ram
43k • written 4.3 years ago by
n,n
▴ 360
1
vote
7
replies
480
views
fastp - can I trim specific adapters only?
trimming
fastp
adapter
24 days ago by
liorglic
★ 1.4k
6
votes
7
replies
1.6k
views
How to assess RNA-Seq batch correction success?
Combat
RNA-Seq
Limma
DESeq2
batch-effect
updated 16 days ago by
Ram
43k • written 5.0 years ago by
borkk
▴ 140
0
votes
7
replies
683
views
Help with summarizeOverlaps function in RNASeq analysis using R
R
RNA-Seq
summarizeOverlaps
GenomicAlignments
updated 27 days ago by
BioinfGuru
★ 1.7k • written 5 weeks ago by
FJCF
• 0
4
votes
7
replies
4.6k
views
snakemake output directory
snakemake
ngs
updated 19 days ago by
进
• 0 • written 3.9 years ago by
Peter Chung
▴ 200
1
vote
7
replies
508
views
gvcf joint calling
WES
GATK
VCF
gVCF
7 days ago by
zihanss
• 0
2
votes
7
replies
391
views
How to access TCGA samples that were treated with a specific drug?
TCGA
RNA-seq
updated 9 hours ago by
Zhenyu Zhang
★ 1.2k • written 2 days ago by
Qroid
▴ 40
4
votes
7
replies
2.4k
views
Batch effects vs biological variables
Batch-effect
DESeq2
combat_seq
updated 26 days ago by
Ram
43k • written 3.7 years ago by
l.uva
▴ 20
4
votes
7
replies
589
views
Very low RNA splicing rate for pulmonary AT2 cells
RNA-velocity
scVelo
scRNA-seq
splicing
5 days ago by
e.r.zakiev
▴ 210
4
votes
7
replies
518
views
To get p-values for the TPM
P-value
TPM
RSEM
updated 10 days ago by
dsull
★ 6.0k • written 11 days ago by
VITALA
• 0
3
votes
7
replies
344
views
FastQC Quality per tile and per sequence behaving strange after using Cutadapt
fastqc
cutadapt
illumina
tile
paired-end
5 days ago by
salias
• 0
1
vote
7
replies
5.1k
views
How do I plot several sns.clustermap heatmaps in a single figure?
python
seaborn
updated 24 days ago by
Wubin
▴ 40 • written 3.5 years ago by
roy.granit
▴ 880
2
votes
7
replies
1.3k
views
6 follow
Differential Expression using Isoseq-supplemented reference transcriptome
RNA-Seq
Salmon
Isoseq
updated 6 days ago by
Gordon Smyth
★ 7.1k • written 8 months ago by
Calum
▴ 10
4
votes
7
replies
713
views
7 follow
Heatmap and rna-seq
RNA-Seq
Heatmap
updated 8 days ago by
dsull
★ 6.0k • written 12 days ago by
qudrat.nii
▴ 10
7
votes
7
replies
1.5k
views
Forum:
Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career
advice
updated 19 days ago by
Dunois
★ 2.5k • written 20 days ago by
AdviceSeeker
• 0
0
votes
7
replies
1.9k
views
Batch effect correction in RNASeq data and plot Dendrograms cluster
clustering
dendrogram
RNA-Seq
batch-effect
updated 16 days ago by
Ram
43k • written 4.0 years ago by
Ankit
▴ 500
2
votes
7
replies
5.3k
views
6 follow
Memory usage of picard Samsort
Picard
SortSam
updated 16 days ago by
ATpoint
82k • written 7.2 years ago by
boymin2020
▴ 80
10
votes
7
replies
7.1k
views
6 follow
Convert GVF to VCF
vcf
updated 19 days ago by
george-hall-ucl
• 0 • written 9.3 years ago by
win
▴ 970
1
vote
6
replies
2.8k
views
Segmentation fault using gemma
gemma
gwas
updated 6 days ago by
dimpleadiwal050896
• 0 • written 4.9 years ago by
ggman
▴ 90
15
votes
6
replies
1.3k
views
6 follow
VCF to human friendly form?
vcf
visualization
updated 20 days ago by
Pierre Lindenbaum
161k • written 19 months ago by
wormball
▴ 10
10
votes
6
replies
9.9k
views
6 follow
CDS vs cDNA vs transcript for mapping RNA-Seq reads
Assembly
rna-seq
alignment
updated 9 days ago by
Antonio R. Franco
★ 5.1k • written 6.0 years ago by
williamsbrian5064
▴ 510
4
votes
6
replies
497
views
Odd results with BLAST remote
blast
remote
NCBI
updated 19 days ago by
b.contreras.moreira
▴ 180 • written 20 days ago by
Begonia_pavonina
▴ 150
2
votes
6
replies
3.7k
views
Algorithm to remove batch effects
single-cell
batch-effect
RNA-Seq
updated 18 days ago by
Ram
43k • written 3.3 years ago by
fouerghi20
▴ 80
2
votes
6
replies
881
views
Batch effect correction with cell type enrichment analysis
limma
RNA-seq
r
batch-effect
updated 18 days ago by
Ram
43k • written 19 months ago by
JACKY
▴ 140
3
votes
6
replies
8.4k
views
RNA-seq, EdgeR and batch effects
RNA-Seq
removeBatchEffect
edgeR
batch-effect
updated 18 days ago by
Ram
43k • written 9.4 years ago by
Ekarl2
▴ 120
3
votes
6
replies
4.1k
views
how do Differential gene expression analysis by Salmon output
differential-gene-expression
Salmon
updated 25 days ago by
Ram
43k • written 5.6 years ago by
lkianmehr
▴ 100
4
votes
6
replies
1.5k
views
CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRleFromGR(x, weight = weight, ignore.strand = ignore.strand): Seqlength…
gff3
GenomicRanges
ORFik
GenomicFeatures
updated 20 days ago by
GenoMax
142k • written 15 months ago by
Estefania
▴ 30
0
votes
6
replies
592
views
PacBio adapters in transcriptome assembly from short read data?
adapter
transcriptome
sequencing
pacbio
vecscreen
19 days ago by
Dunois
★ 2.5k
7
votes
6
replies
1.3k
views
using different microarray datasets (meta-analysis?) for DEG pipeline
microarray
meta-analysis
DEG
batch-effect
updated 17 days ago by
Ram
43k • written 4.9 years ago by
mosesoo
▴ 30
0
votes
6
replies
280
views
How does gene length effect the number of reads mapped
RNA-seq
CPM
sequencing
updated 2 days ago by
dsull
★ 6.0k • written 3 days ago by
Chen
• 0
5
votes
6
replies
7.3k
views
scatter plot, aov()
aov
scatter-plot
anova
updated 18 days ago by
Ram
43k • written 3.2 years ago by
Rob
▴ 170
0
votes
6
replies
1.0k
views
Considering that the basal expression level is not 0 for the calculation of the differential expression
DESEQ2
RNA-Seq
Differential-gene-Expression
updated 25 days ago by
Ram
43k • written 5.8 years ago by
Pin.Bioinf
▴ 340
7
votes
6
replies
541
views
Filtering sam or bam file with maximum matching region
crisper-edited
alignment
match
14 days ago by
analyst
▴ 30
1
vote
6
replies
475
views
Rename multiple fastq.gz files
fastq
next-gen
updated 18 days ago by
shenwei356
8.5k • written 18 days ago by
Jérémie
• 0
3
votes
6
replies
11k
views
List of species in RepeatMasker Tool (species parameter)
RepeatMasker
Masking
updated 18 days ago by
Bioinfotec
▴ 10 • written 7.6 years ago by
nut_B
▴ 10
3
votes
6
replies
901
views
Any problem re-using last year's RNA-Seq data in this year's analysis?
RNA-Seq
batch-effect
updated 18 days ago by
Ram
43k • written 3.7 years ago by
oakhamwolf
▴ 20
3
votes
6
replies
1.5k
views
edgeR FDR always 1
FDR
differential-gene-expression
edgeR
miRNA
updated 25 days ago by
Ram
43k • written 4.9 years ago by
AngAdd
▴ 20
2
votes
6
replies
497
views
KEGG analysis in R
KEGG
clusterProfiler
Zea-mays
23 days ago by
sansan_96
▴ 80
0
votes
6
replies
395
views
How to slice a gvcf file with tabix?
Tabix
bed
gvcf
11 days ago by
Sd
• 0
8
votes
6
replies
2.5k
views
Batch effect removal with the help of sva
SVA
batch-effect
gene-expression
updated 26 days ago by
Ram
43k • written 3.5 years ago by
Gene_MMP8
▴ 240
4
votes
6
replies
3.9k
views
Correcting for batch effect in RNA-seq data
RNA-Seq
batch-effect
updated 17 days ago by
Ram
43k • written 4.8 years ago by
Rimma
▴ 30
0
votes
6
replies
623
views
Best practices for differential expression analysis with low-yield Nanopore/ONT direct cDNA data?
differential-expression
RNA-Seq
ONT
Nanopore
updated 25 days ago by
Ram
43k • written 5 months ago by
tw_140
• 0
1,006 results • Page
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