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117,475 results • Page
1 of 2350
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Votes
Replies
0
votes
0
replies
10
views
Removing batch effect in time-series data
batch
effect
41 minutes ago by
Álvaro
• 0
0
votes
1
reply
18
views
Interproscan
configuration
install
interproscan
exist
not
updated 1 hour ago by
Dunois
★ 2.5k • written 1 hour ago by
antochirico98
• 0
1
vote
2
replies
22
views
BCFtools not calling variant, despite adequate coverage
bcftools
variant
calling
updated 1 hour ago by
Pierre Lindenbaum
162k • written 1 hour ago by
mpiersonsmela
• 0
0
votes
0
replies
15
views
New versions of the same transcripts ID may have different exons coordinates??
RefSeq
1 hour ago by
ManuelDB
▴ 80
0
votes
1
reply
22
views
How can I get the total list of RefSeq transcripts?
RefSeq
updated 1 hour ago by
GenoMax
143k • written 1 hour ago by
ManuelDB
▴ 80
3
votes
12
replies
790
views
7 follow
Failed to download data from EBI BioStudies with ascp/Aspera
aspera
EBI
updated 8 hours ago by
ruiyan_hou
• 0 • written 9 weeks ago by
biock
▴ 70
0
votes
0
replies
46
views
Problem in input data loading in Structure
Structure-Pritchard
9 hours ago by
RN
• 0
0
votes
0
replies
54
views
running multiple GEO Dataset projects
GEO
updated 5 hours ago by
Ram
44k • written 13 hours ago by
analyst
▴ 50
808
votes
167
replies
146k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 12 days ago by
Biostar
2.9k • written 7.5 years ago by
Istvan Albert
101k
0
votes
0
replies
64
views
MEME PWM format - what is the meaning of nsites?
motif
sequence
meme-suite
pwm
meme
15 hours ago by
mcsimenc
▴ 20
0
votes
2
replies
186
views
Example human WGS fastq data
WGS
updated 15 hours ago by
Ming Tommy Tang
★ 4.0k • written 1 day ago by
ramiro.barrantes
• 0
0
votes
2
replies
165
views
Download SRR by parallele and fastq dump with a wired problem
linux
scRNA-seq
parallel
3 hours ago by
diqixiaoyaoer
▴ 20
0
votes
0
replies
65
views
Tutorial:
Seurat Object Explained: Beginner's Guide and Demo
scRNA-seq
Seurat
single-cell
updated 5 hours ago by
Ram
44k • written 15 hours ago by
Ming Tommy Tang
★ 4.0k
0
votes
1
reply
133
views
Empty txt file as an output of "seqkit stats" for multiple fastq files
NGS
Linux
updated 21 hours ago by
shenwei356
8.5k • written 23 hours ago by
Mohamed Samir
▴ 30
0
votes
3
replies
197
views
how linearize nucleotide lines in axt file
axt
updated 5 hours ago by
Ram
44k • written 1 day ago by
resug
▴ 30
0
votes
0
replies
85
views
How to Merge Single Chromosome Genomic Annotations
BRAKER3
genome
annotation
1 day ago by
Kinoppy
• 0
5
votes
6
replies
318
views
Alignment tool for very short reads (25bp)
mapper
aligner
bwa
alignment
bowtie2
updated 15 hours ago by
Ming Tommy Tang
★ 4.0k • written 1 day ago by
arriyaz.nstu
▴ 50
0
votes
0
replies
216
views
Job:
PhD-position in bioinformatics / computational biology (75% E13) at Ruhr-University Bochum
NGS
aging
Epigenomics
mole-rat
omics
1 day ago by
Arne.Sahm
• 0
0
votes
0
replies
88
views
FUMA ,post-GWAS
post-GWAS
FUMA
GWAS
1 day ago by
SeoG
• 0
0
votes
0
replies
89
views
What path list should be used to surject GAM to GRCh38/CHM13 reference genome
vg
1 day ago by
Hanc
• 0
1
vote
4
replies
250
views
Help aligning Nanopore Long Read RNA seqs
rna-seq
long-read
minimap2
updated 18 hours ago by
rfran010
▴ 960 • written 1 day ago by
sewaw37819
• 0
0
votes
1
reply
145
views
Job:
postdoc/master's position AI ML
python
Neuroscience
machine-learning
updated 4 hours ago by
Ram
44k • written 1 day ago by
sivan.kinreich
• 0
0
votes
1
reply
134
views
Is T2T genome a "alternate assembly"
T2T
grch38
alternate_assembly
ref_genome
updated 4 hours ago by
GenoMax
143k • written 1 day ago by
Daniel
• 0
3
votes
2
replies
219
views
edgeR batch effect model matrix sanity check
R
edgeR
RNA-seq
batch-effect
1 day ago by
kmyers2
▴ 90
0
votes
2
replies
176
views
minimap2 U to T conversion
minimap2
2 days ago by
kewoka9286
• 0
2
votes
9
replies
289
views
BBMap Excess Fold Coverage
bbmap
2 days ago by
shacon
• 0
0
votes
1
reply
142
views
Jellyfish docker image error with bam files
jellyfish
docker
kmers
updated 2 days ago by
bhumm
▴ 150 • written 2 days ago by
enee
▴ 10
3
votes
4
replies
252
views
Overrepresented sequence in reverse read
FastQC
Genomics
Trimmomatic
Sequencing
ATAC
1 day ago by
Jaskaran Singh
• 0
1
vote
1
reply
222
views
What is the difference between the taxonomy classification and binning in metagenomic?
binning
taxonomy
metagenomic
updated 2 days ago by
Ram
44k • written 4 days ago by
QuotoAstro
• 0
0
votes
0
replies
122
views
Testing difference in median of clinical variabls in Rna-seq data
clinical-features
RNA-seq
updated 2 days ago by
Ram
44k • written 2 days ago by
Znow
▴ 10
0
votes
1
reply
167
views
Split the fastqc file base on barcode
fastq
updated 2 days ago by
GenoMax
143k • written 2 days ago by
QX
▴ 20
5
votes
7
replies
284
views
Illumina Raw Data Multiple Read FIles Discussion
novaseqX
pairedend
illumina
fungus
2 days ago by
Umer
▴ 80
4
votes
4
replies
366
views
Intuitive Graphical Interface for Executing nf-core Pipelines
GUI
genomics
ngs
updated 2 days ago by
Ram
44k • written 3 days ago by
Nour-eddine
▴ 30
0
votes
0
replies
126
views
Enriched Bar Chart on Blast2go gives percentage more than 100%
Blast2go
updated 2 days ago by
Ram
44k • written 2 days ago by
Mohamed Abderrahmane
▴ 20
0
votes
0
replies
122
views
Removing inherent biomarker sensor signals from the actual sensor readings
python
data
noise
2 days ago by
bluecipher
• 0
0
votes
2
replies
466
views
How to use topGO tool for enrichment analysis of non-model organisms
topGO
updated 2 days ago by
wdlin
• 0 • written 4 months ago by
otieno43
▴ 30
2
votes
3
replies
299
views
RSEM getting TPM from STAR alignment
TPM
STAR
RNAseq
RSEM
2 days ago by
Emily
▴ 20
0
votes
0
replies
137
views
Help : Run EVE for CAMK2A.
VEP
EVE
2 days ago by
Meto
• 0
2
votes
3
replies
253
views
Is TMM apropriated for Welch test between gender?
welch-test
TMM
updated 2 days ago by
Ram
44k • written 2 days ago by
Znow
▴ 10
0
votes
4
replies
310
views
SPAdes error when trying to specify options for path
spades
updated 2 days ago by
Mensur Dlakic
★ 27k • written 3 days ago by
AINUR FATIN BINTI MAZRI
• 0
0
votes
1
reply
173
views
Poor alignment post-SortMeRNA (rRNA removal)
STAR
rRNA
RNAseq
SortMeRNA
updated 2 days ago by
andres.firrincieli
3.6k • written 2 days ago by
Fossil
▴ 20
0
votes
1
reply
288
views
How to extract gene_counts_length_scaled matrix from either raw count matrix or SE object
recount3
salmon
gtex
tximport
deseq2
updated 2 days ago by
ATpoint
83k • written 3 days ago by
Aditya
• 0
0
votes
2
replies
246
views
how to see Pacbio reads in IGV
pbmm2
pbindex
Pacbio
long-reads
revio
updated 2 days ago by
Pierre Lindenbaum
162k • written 2 days ago by
María José
• 0
1
vote
1
reply
342
views
TensorQTL Mapping - permutation p values for all associations
permutation
TensorQTL
2 days ago by
Paula
▴ 10
1
vote
3
replies
252
views
How to do preprocessing from fastqc
fastqc
scRNA-seq
single-cell
updated 1 day ago by
Ram
44k • written 2 days ago by
Lulu
• 0
0
votes
1
reply
175
views
Trying to use equivalence test from a diffbind dataset
Diffbind
R
DESeq2
ChIP-seq
ATAC-seq
updated 2 days ago by
ATpoint
83k • written 3 days ago by
jandrade
• 0
2
votes
2
replies
242
views
Consistent cluster coloring
R
Seurat
2 days ago by
solo.albif
• 0
1
vote
3
replies
285
views
Slot to pull data from for DoHeatmap
DESeq2
DoHeatmap
Seurat
Pseudobulk
updated 15 hours ago by
Ming Tommy Tang
★ 4.0k • written 3 days ago by
bio_info
▴ 20
0
votes
0
replies
157
views
News:
online course on Adaptation Genomics
Structural-Variants
Population-Genomics
Adaptation-Genomics
updated 3 days ago by
Ram
44k • written 3 days ago by
carlopecoraro2
★ 2.5k
2
votes
3
replies
457
views
Is it possible to modify the gene names from the x-axis in Seurat::Dotplot?
seurat
scRNA-seq
single-cell
dotplot
updated 3 days ago by
Ram
44k • written 9 days ago by
ev97
▴ 20
117,475 results • Page
1 of 2350
Recent Votes
Comment: BCFtools not calling variant, despite adequate coverage
Comment: Making heatmaps of ATACseq annotation data in R?
Answer: Failed to download data from EBI with ascp
Failed to download data from EBI BioStudies with ascp/Aspera
Comment: in R, how to get the gene symbols of GPL
C: Is my WGCNA soft threshold (power) too low?
edgeR batch effect model matrix sanity check
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Recent Replies
Comment: bedtools coverage gives error received illegal bin number, but that number isn't
by
Rashedul Islam
▴ 470
> sed 's/[^[:print:]\t]//g' infile >outfile Worked for me
Comment: Interproscan
by
Dunois
★ 2.5k
Can you show us the paths where you've placed these files please? (E.g., with `ls`.)
Comment: BCFtools not calling variant, despite adequate coverage
by
Pierre Lindenbaum
162k
what is the output of **samtools** mpileup for this position ?
Comment: BCFtools not calling variant, despite adequate coverage
by
Pierre Lindenbaum
162k
unless I'm wrong all the reads in this IGV screenshot look "blank" which is usually the color for the reads of low quality, duplicate, etc.…
Comment: How can I get the total list of RefSeq transcripts?
by
GenoMax
143k
> total list of the RefSeq transcripts of this version to do some checking and version compatibility. Unless you are interested in specif…
Comment: Download SRR by parallele and fastq dump with a wired problem
by
diqixiaoyaoer
▴ 20
Thanks, I will have a try.
Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
by
Ming Tommy Tang
★ 4.0k
use GenomicRanges::reduce()
Comment: Is T2T genome a "alternate assembly"
by
GenoMax
143k
You are downloading the correct file if you are interested in the T2T genome. My guess is that the assembly is labeled "alternate" likely…
Comment: postdoc/master's position AI ML
by
Ram
44k
Please invest some effort into formatting your post, don't just copy-paste. A lot can be lost and mistranslated when you copy from a web-pa…
Comment: Determining biological relevance of a list of motifs?
by
Ronin
▴ 10
Hi, sorry for the late response, I was ill. The setup is looking at a particular tissue (eye samples) in a non-model species, and I used th…
Comment: Failed to download data from EBI BioStudies with ascp/Aspera
by
ruiyan_hou
• 0
Thank you very much for your quick reply! It is very useful.
Comment: how linearize nucleotide lines in axt file
by
rfran010
▴ 960
I think that's a tough one. Will the two sequences under each header always be equal lengths? If so, I'm thinking a custom script that can …
Comment: Failed to download data from EBI with ascp
by
Michael
54k
I have tested and concluded that **there is a problem with Aspera download from** **BioStudies** (ENA and BioStudies are technically differ…
Comment: Slot to pull data from for DoHeatmap
by
Ming Tommy Tang
★ 4.0k
use the data slot, and as shown in the code, you then scale it by yourself.
Answer: Example human WGS fastq data
by
Ming Tommy Tang
★ 4.0k
Take a look at Genome in a Bottle https://www.nist.gov/programs-projects/genome-bottle
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