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121,932 results • Page
108 of 2439
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Votes
Replies
5
votes
2
replies
1.2k
views
vg autoindex seems stuck after a week of running
vg
pangenome
16 months ago by
StevieP
▴ 20
0
votes
3
replies
1.3k
views
Kraken2 Custom Database non-deterministic results
Metagenomics
kraken2
updated 16 months ago by
colindaven
8.0k • written 16 months ago by
Bjorn
• 0
0
votes
1
reply
778
views
How to get 2 seurat objects into a DEseq
Seurat
DEseq
updated 16 months ago by
Ram
45k • written 16 months ago by
He11oJe11o
• 0
0
votes
0
replies
441
views
Rescaling normalized enrichment score (NES)
heatmap
16 months ago by
CTLong
▴ 140
0
votes
3
replies
991
views
Splitting query fasta file for Diamond Blastp make the process faster?
DIAMOND
16 months ago by
kmat
• 0
0
votes
1
reply
550
views
Mapping difference with BWA
variant-calling
samtools
bam
BWA
genomics
updated 16 months ago by
ATpoint
89k • written 16 months ago by
rj.rezwan
▴ 20
0
votes
0
replies
362
views
Kegg Pathways to Circos
Genomics
KEGG
Circos
16 months ago by
dlera.lozano
▴ 10
3
votes
6
replies
1.9k
views
Problem in getting geo file through GEOQUERY
geoquery
Geo
updated 16 months ago by
Ram
45k • written 16 months ago by
anasjamshed
▴ 140
0
votes
1
reply
706
views
Multi-ploid data in ANGSD and NGSadmix
ancestry
diploid
haploid
admixture
updated 16 months ago by
andersdetermig
▴ 20 • written 16 months ago by
Christopher
• 0
0
votes
2
replies
1.1k
views
transanno liftvcf "Error: length of chromosome [chr] is not equal to length in chain file. Are you using correct reference?"
liftover
transanno
16 months ago by
ezz3
• 0
1
vote
10
replies
2.4k
views
Add stats to the plot
R
16 months ago by
G.S
▴ 60
0
votes
4
replies
995
views
Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
GATK
UnifiedGenotyper
16 months ago by
shpak.max
▴ 60
2
votes
4
replies
1.2k
views
Allele count of 2 for homoplasmic MT variants in VCF
Variant-Calling
GATK
VCF
16 months ago by
Arton
▴ 20
1
vote
3
replies
1.1k
views
downloading chemical database from ChEMBL
ChEMBL
PyRMD
Virtual-Screening
updated 16 months ago by
GenoMax
154k • written 16 months ago by
s
• 0
1
vote
3
replies
1.0k
views
Where are the illumina adapters on Trimmomatic take from?
rna-seq
trimmomatic
updated 16 months ago by
GenoMax
154k • written 16 months ago by
bioinfo
▴ 160
3
votes
2
replies
955
views
Multiplexing for pooled CRISPR screen sequencing
multiplex
CRISPR-screen
Illumina
16 months ago by
Tuấn Anh
• 0
2
votes
4
replies
2.4k
views
Is it possible to run CibersortX with a very small number of samples?
cibersortx
16 months ago by
Aspire
▴ 390
2
votes
4
replies
1.4k
views
Functional enrichment analysis for unique gene IDs
RNA-SEQ
16 months ago by
Pegasus
▴ 130
0
votes
2
replies
871
views
Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis of Spleen Samples from Different Conditions
Seurat
scRNA-Seq
Single-Cell
16 months ago by
Shukai
• 0
1
vote
3
replies
872
views
Question about samtools view flags (paired reads vs. properly paired reads)
samtools
updated 16 months ago by
Pierre Lindenbaum
166k • written 16 months ago by
mrk
• 0
0
votes
3
replies
1.5k
views
z-score of gene set
z-score
scRNA
gene-set
16 months ago by
Hien
• 0
3
votes
2
replies
768
views
converting transcript IDs (Ensembl) to gene symbols in R
RNA-seq
updated 16 months ago by
GenoMax
154k • written 16 months ago by
ashkan
▴ 160
0
votes
0
replies
436
views
Linking AMR Genes to Taxonomy in Soil Metagenomics
metagenomics
bacteria
wgs
AMR
resistome
updated 16 months ago by
GenoMax
154k • written 16 months ago by
LuciaNhu
▴ 10
2
votes
2
replies
790
views
How can we convert a vcf to fasta, so that I can blast some genes against that whole genome sequences?
blast
fasta
vcf
gene
updated 16 months ago by
Ram
45k • written 16 months ago by
Harshita
• 0
3
votes
0
replies
559
views
Comparing ATAC-seq narrowPeak Files from Chicken and Mouse
liftOver
ATAC-seq
csaw
updated 16 months ago by
Ram
45k • written 16 months ago by
Rafael Soler
★ 1.3k
0
votes
0
replies
599
views
Job:
PhD position for metagenomics analysis at the University of Udine
metagenomics
updated 16 months ago by
Ram
45k • written 16 months ago by
Fabio Marroni
★ 3.0k
3
votes
5
replies
1.4k
views
Practical Haplotype Graph v2 not finding correct paths
Pangenome
PHG
graph
16 months ago by
beantkapoor16
▴ 10
0
votes
1
reply
741
views
DRAGEN gVCF files and joint calling GATK-GenomicsDB
DRAGEN
GenomicsDB
updated 16 months ago by
DBScan
▴ 530 • written 16 months ago by
brunomiwa
• 0
0
votes
0
replies
320
views
Last step of metagenome analysis before visualization
metagenome
python
analyis
16 months ago by
Ayda Ecem
• 0
0
votes
3
replies
831
views
Generating a Bed file from a Fasta file
bed
NullSeq
updated 16 months ago by
Ram
45k • written 16 months ago by
pirku
• 0
0
votes
3
replies
2.7k
views
Running STRUCTURE from command line
STRUCTURE
updated 16 months ago by
Ram
45k • written 4.4 years ago by
giulia.trauzzi
▴ 30
1
vote
3
replies
2.3k
views
Pruning Phylogenetic Trees and Bootstrap Values
phylogenetics
bootstrap
updated 16 months ago by
Klaus S
▴ 160 • written 17 months ago by
Zeng Hao
▴ 40
1
vote
1
reply
1.1k
views
Herald:
The Biostar Herald for Monday, November 01, 2021
herald
written 3.9 years ago by
Biostar
3.6k
20
votes
10
replies
11k
views
7 follow
T2T-CHM13 "complete" human genome gff/gtf annotation file
genomics
written 4.3 years ago by
noodle
▴ 650
0
votes
0
replies
409
views
How to recover the entire sequence from all_contig_annotations.csv?
VDJ
single-cell
TCR-seq
cellranger
10x
16 months ago by
dawnyipingzou
• 0
0
votes
4
replies
1.1k
views
Where to find old version of GATK best practice
gatk
16 months ago by
Zhenyu Zhang
★ 1.3k
0
votes
1
reply
626
views
Nextflow docker: Error response from daemon
sarek
gatk4
docker
nextflow
updated 16 months ago by
Pierre Lindenbaum
166k • written 16 months ago by
Peter Chung
▴ 210
0
votes
0
replies
499
views
News:
Online course- Advanced Python for Life Sciences
Python-Programming
Data-Visualisation
Machine-Learning
updated 16 months ago by
Ram
45k • written 16 months ago by
Physalia-courses
★ 2.6k
0
votes
2
replies
1.5k
views
CreateSeuratObject taking very long
seurat
16 months ago by
eae6d2e7
• 0
1
vote
2
replies
1.3k
views
Elbow plot question (scRNA seq data analysis - scanpy tutorial)
scanpy
16 months ago by
ojaswinipandey
• 0
1
vote
4
replies
1.1k
views
How to find SRA sequences of some fungal whole genome sequences if only Biosample ID is available?
SRA
whole-genome-sequencing
NCBI
updated 16 months ago by
Ram
45k • written 16 months ago by
Harshita
• 0
2
votes
4
replies
1.0k
views
Filter Genome for Specific Sites
bedtools
updated 16 months ago by
Ram
45k • written 16 months ago by
Anita
• 0
0
votes
3
replies
953
views
Error in using BioSampleParser tool: subscript out of bounds
R
updated 16 months ago by
marco.barr
▴ 180 • written 16 months ago by
Mohamed Samir
▴ 30
1
vote
1
reply
646
views
Generating Group/Cluster Lists from fastq files
Sequencing
RNA-seq
DNA-Seq
updated 16 months ago by
GenoMax
154k • written 16 months ago by
niruf
• 0
0
votes
0
replies
443
views
News:
Online course: Network analysis in Systems Biology with R/Bioconductor
Bioconductor
Systems-Biology
Network-Analysis
R
updated 16 months ago by
Ram
45k • written 16 months ago by
Physalia-courses
★ 2.6k
3
votes
0
replies
24k
views
Herald:
The Biostar Herald for Monday, May 20, 2024
herald
16 months ago by
Biostar
3.6k
0
votes
2
replies
922
views
vcf phasing
beagle
WhatsHap
phasing
16 months ago by
safeassli
▴ 10
0
votes
2
replies
930
views
How to generate an Upset plot in R to plot the shared variants between cell free DNA samples
r
Upset
16 months ago by
sainavyav22
• 0
0
votes
1
reply
1.5k
views
Illumina methylation EPIC V2 array
ewas
methylation
enrichment
missMethyl
EPIC
updated 16 months ago by
fu_entomology
▴ 40 • written 2.0 years ago by
juliviglino
• 0
1
vote
2
replies
703
views
How to find identical sequences in genome fasta file (by Python or any possible program) ?
fasta
updated 16 months ago by
Ram
45k • written 16 months ago by
Sony
▴ 20
121,932 results • Page
108 of 2439
Recent Votes
What happened to biomart.org
Answer: allele frequency in VCF
Understanding terms, specifically relating to GT:PL in a VCF file
Comment: Looking to learn practical bioinformatics
Answer: WGCNA package in R: dendogram plot error
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
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7.1k
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Recent Replies
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
Thank you, genomax, for the recommendations! Very helpful!
Comment: Learning Biology/Bioinformatic Basics
by
Upesh
▴ 20
For anyone landing on this page, the updated link is: [https://www.langmead-lab.org/teaching.html][1] [1]: https://www.langmead-lab.org/…
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