Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
121,931 results • Page
107 of 2439
Sort: Rank
Rank
Views
Votes
Replies
0
votes
1
reply
564
views
finding highly divergent orthologs using exonerate
ortholog
Exonerate
evolution
updated 16 months ago by
dthorbur
★ 3.1k • written 16 months ago by
Emily
▴ 20
2
votes
3
replies
1.1k
views
How to calculate nucleotide diversity (mtDNA, PacBio_data), Suggest me some tools
NucleotideDiversity
mtDNA
PacBio
16 months ago by
hashim.rana11
▴ 40
0
votes
1
reply
434
views
Does prokka work the same on forward and reverse complementary reads?
Prokka
updated 16 months ago by
Pierre Lindenbaum
166k • written 16 months ago by
Maksim
• 0
1
vote
2
replies
912
views
Trouble with PLINK's logistic regression analysis and covariatesTrouble with PLINK's logistic regression analysis and covariates
PLINK
GWAS
SNP
16 months ago by
F110152169
• 0
8
votes
10
replies
4.3k
views
8 follow
Venter Genome Vcf
vcf
updated 16 months ago by
Jeremy Leipzig
23k • written 11.5 years ago by
win
▴ 990
0
votes
0
replies
441
views
16S analysis for specie of bacteria identification
Species-identification
16S
Kraken2
updated 16 months ago by
Ram
45k • written 16 months ago by
Christopher
▴ 10
0
votes
0
replies
503
views
abundance_estimates_to_matrix.pl in Trinity is not generating any matrices / output
trinity
updated 16 months ago by
GenoMax
154k • written 16 months ago by
jway
• 0
0
votes
3
replies
1.1k
views
What is a good way to do gene differentials in single cell data where one group is small 90 cells and the other group 30,000 cells or 2000 cells.
cell
RNA-Seq
single
updated 16 months ago by
ATpoint
89k • written 16 months ago by
shahzaibali
• 0
0
votes
2
replies
816
views
Trying to understand warning from MACS2 about too few paired peaks and differing results in DiffBind
MACS2
ATACseq
DiffBind
16 months ago by
atan
• 0
0
votes
2
replies
949
views
What do the transcript variant # mean in RefSeq?
refseq
updated 16 months ago by
Ram
45k • written 16 months ago by
curious
▴ 890
4
votes
7
replies
2.5k
views
Mouse or Rat Gene Expression Data Similar to GTEx
whole-body
expression
atlas
updated 14 months ago by
ATpoint
89k • written 16 months ago by
Shicheng Guo
★ 9.6k
1
vote
3
replies
1.2k
views
Error when looping over multiple columns in a data frame in R
Statistics
R
updated 16 months ago by
Jeremy
▴ 930 • written 16 months ago by
Mohamed Samir
▴ 30
2
votes
0
replies
1.0k
views
Job:
Permanent Position as Researcher/Computational Biologist at the National Genomics Infrastructure (Sweden)
Genomics
Sequencing
Sweden
Stockholm
SciLifeLab
16 months ago by
Matthias Zepper
5.1k
0
votes
1
reply
505
views
BEAST2.5 Chloroplast Divergence Time using Fossil Records
BEAST2.5
Fossil
updated 16 months ago by
Ram
45k • written 16 months ago by
a.bibek52
▴ 10
3
votes
7
replies
6.6k
views
Difference in Bismark output methylation call files and coverage files
RRBS
Bismark
DNA-methylation
updated 16 months ago by
Papyrus
★ 3.1k • written 5.3 years ago by
linelr
▴ 40
3
votes
2
replies
1.0k
views
Job:
2 PhD Students in single-cell bioinformatics
PhD
Genomics
single-cell
NGS
16 months ago by
mtabaka
▴ 30
0
votes
1
reply
738
views
minfi::getQC - badsamplecutoff 10.5
getqc
minfi
methylation
EPICv2
updated 16 months ago by
Papyrus
★ 3.1k • written 16 months ago by
June
• 0
0
votes
2
replies
1.4k
views
minfi::getQC - is default badsamplecutoff of 10.5 always appropriate? ~half of samples fail by this measure
getqc
ewas
minfi
updated 16 months ago by
June
• 0 • written 2.2 years ago by
rkb965
• 0
4
votes
6
replies
1.3k
views
Error with BiocParallel. No barcodes files found
Barcodes
scRNA-seq
SingleCellExperiment
16 months ago by
bio_info
▴ 20
3
votes
3
replies
1.0k
views
Unexpected read length from NGS
NGS
Illumina
16 months ago by
QX
▴ 80
2
votes
7
replies
2.1k
views
samtools write-index
samtools
16 months ago by
R.L.
• 0
2
votes
3
replies
1.3k
views
How do we do quantification using stringtie merge option for all the merged samples generated.
stringtie
quantification
16 months ago by
Varsha
• 0
3
votes
2
replies
840
views
How to interpret this plotMDS of three disease clusters?
microarray
plotMDS
DEGs
updated 16 months ago by
ATpoint
89k • written 16 months ago by
egascon
▴ 60
0
votes
0
replies
368
views
GWAS or QTL mapping in RIL population
GWAS
RIL
16 months ago by
韩雨
• 0
0
votes
0
replies
398
views
VEP annotation tool: "." isn't numeric in addition (+)
VEP
VCF
updated 16 months ago by
Ram
45k • written 16 months ago by
emma.a
▴ 130
11
votes
13
replies
21k
views
7 follow
log2 fold change in RNA-seq analysis
fold
log2
change
updated 16 months ago by
May Ling
▴ 10 • written 3.7 years ago by
wmsalsah
▴ 10
0
votes
1
reply
647
views
GWAS Phenotypes
GWAS
updated 16 months ago by
韩雨
• 0 • written 17 months ago by
Onyeubani
▴ 90
5
votes
4
replies
9.9k
views
6 follow
Classic threshold for log2 fold change in RNA-seq experiment
RNA-Seq
updated 16 months ago by
May Ling
▴ 10 • written 5.2 years ago by
Mozart
▴ 330
1
vote
1
reply
620
views
Cellranger-multi : Demultiplexing and Analyzing 5’ Immune Profiling Libraries Pooled with Hashtags
5InmuneProfiling
nf-core
scRNAseq
cellranger-multi
Nextflow
updated 16 months ago by
GenoMax
154k • written 16 months ago by
azeu
▴ 10
0
votes
0
replies
304
views
Assigning Micro-C read pairs to nucleosomes called from MNase-seq data?
Hi-C
MNase-Seq
16 months ago by
Linus
• 0
7
votes
3
replies
15k
views
Z score in RNAseq
RNA-Seq
Zscore
updated 16 months ago by
SKY
▴ 60 • written 7.8 years ago by
rob.costa1234
▴ 310
0
votes
1
reply
452
views
Free AI for R programming
R
updated 16 months ago by
Ram
45k • written 16 months ago by
mohamadzare6022
▴ 10
9
votes
13
replies
5.2k
views
7 follow
Forum:
Ideal PC configurations and operating system for bioinformatics laboratory
PC
updated 16 months ago by
i.sudbery
22k • written 17 months ago by
Estevão
▴ 10
0
votes
1
reply
608
views
Extracting haplotype-specific annotations from splicing graph
vg
updated 15 months ago by
Jordan M Eizenga
▴ 760 • written 16 months ago by
Juhyun
• 0
0
votes
0
replies
379
views
Phyloseq returning black bars for plot_bar
phyloseq
bioconductor
R
16 months ago by
Jacob
• 0
3
votes
8
replies
2.4k
views
Random Access remote BAM files
htslib
BAM
updated 16 months ago by
a.penatauber
• 0 • written 19 months ago by
Lucas R.F.
▴ 20
0
votes
0
replies
341
views
Cancer vs Normal Cell Classification Based on SNVs
cancer
16 months ago by
dglad
• 0
0
votes
4
replies
997
views
merge overlaps and remove non overlap genomic windows
BED
intersection
overlap
16 months ago by
reza
▴ 300
0
votes
2
replies
936
views
Small secondary peak for per sequence GC content - FASTQC results (bulk RNA-seq)
RNAseq
updated 16 months ago by
GenoMax
154k • written 16 months ago by
Fossil
▴ 30
1
vote
2
replies
1.1k
views
Construction of circos plot from WGS data
WGS
Circos
16 months ago by
Anitha
▴ 10
1
vote
3
replies
989
views
Trimmomatic running but files containing purged reads are empty
fastqc
fastq
trimmomatic
updated 16 months ago by
GenoMax
154k • written 16 months ago by
Wilber0x
▴ 50
0
votes
0
replies
362
views
How to find nucleotide changes and the predicted effect when comparing two genomes
BLAST
alignment
updated 16 months ago by
Ram
45k • written 16 months ago by
Melissa
• 0
5
votes
3
replies
1.3k
views
FastQC interpretation - 16S sequencing
interpretation
amplicon
Fastqc
16S
updated 16 months ago by
GenoMax
154k • written 16 months ago by
Christopher
▴ 10
0
votes
0
replies
524
views
Subset of ATAC-seq peaks has high variance
atac-seq
edgeR
R
normalization
16 months ago by
Tim
• 0
2
votes
6
replies
1.6k
views
How to get the ratio of allele counts from GATK derived VCF file?
GATK
VCF
SNP
Freebayes
14 months ago by
anikcropscience
▴ 270
0
votes
0
replies
400
views
KEGG pathway enrichment analysis in Zea mays with R
KEGG
Zea-mays
R
updated 16 months ago by
Ram
45k • written 16 months ago by
letizia.ottaviani
• 0
0
votes
6
replies
1.3k
views
from CRAM to fastq
FASTQ
WGS
CRAM
updated 16 months ago by
ATpoint
89k • written 16 months ago by
machaalani29
• 0
0
votes
0
replies
399
views
News:
Bioinformatic Analysis of Transposable Elements course
Genome-Annotation
TE
Manual-Curation
Transposable-Elements
updated 16 months ago by
Ram
45k • written 16 months ago by
Physalia-courses
★ 2.6k
0
votes
1
reply
471
views
No output when converting transcript IDs to gene symbols
RNA-seq
updated 16 months ago by
Ram
45k • written 16 months ago by
ashkan
▴ 160
5
votes
2
replies
1.2k
views
vg autoindex seems stuck after a week of running
vg
pangenome
16 months ago by
StevieP
▴ 20
121,931 results • Page
107 of 2439
Recent Votes
Answer: allele frequency in VCF
Understanding terms, specifically relating to GT:PL in a VCF file
Comment: Looking to learn practical bioinformatics
Answer: WGCNA package in R: dendogram plot error
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Looking to learn practical bioinformatics
Recent Locations •
All
Norway,
7 minutes ago
United Kingdom,
20 minutes ago
Hong Kong,
32 minutes ago
Egypt,
55 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087,
58 minutes ago
Bologna,
1 hour ago
India,
1 hour ago
Recent Awards •
All
Popular Question
to
m90
▴ 30
Popular Question
to
Chris
▴ 360
Popular Question
to
nuorain
▴ 40
Popular Question
to
BioinfoBee
• 0
Popular Question
to
curious
▴ 890
Popular Question
to
Physalia-courses
★ 2.6k
Teacher
to
GenoMax
154k
Recent Replies
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
Thank you, genomax, for the recommendations! Very helpful!
Comment: Learning Biology/Bioinformatic Basics
by
Upesh
▴ 20
For anyone landing on this page, the updated link is: [https://www.langmead-lab.org/teaching.html][1] [1]: https://www.langmead-lab.org/…
Traffic: 3814 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6