20 months ago by
Ming Tommy Tang
★
4.7k
1
vote
0
replies
1.2k
views
1
vote
3
replies
2.2k
views
7
votes
5
replies
6.0k
views
updated 20 months ago by
Adam Taranto
▴
40
•
written 6.8 years ago by
shenwei356
8.7k
3
votes
5
replies
8.3k
views
updated 20 months ago by
Adam Taranto
▴
40
•
written 5.7 years ago by
ricardoguerreiro2121
▴
80
1
vote
3
replies
1.2k
views
0
votes
3
replies
875
views
0
votes
0
replies
531
views
1
vote
3
replies
1.1k
views
1
vote
4
replies
2.0k
views
1
vote
3
replies
1.4k
views
19 months ago by
Begonia_pavonina
▴
210
4
votes
9
replies
2.6k
views
20 months ago by
Allan
•
0
0
votes
3
replies
1.1k
views
updated 20 months ago by
swbarnes2
15k
•
written 20 months ago by
manuelmourato25
•
0
0
votes
3
replies
1.1k
views
0
votes
2
replies
758
views
20 months ago by
GenesisBio
•
0
2
votes
3
replies
985
views
6
votes
23
replies
4.7k
views
20 months ago by
young_bioinformatician
▴
240
2
votes
3
replies
1.7k
views
5
votes
5
replies
1.7k
views
2
votes
1
reply
887
views
4
votes
3
replies
1.3k
views
1
vote
1
reply
698
views
updated 20 months ago by
Gordon Smyth
★
8.3k
•
written 20 months ago by
CTLong
▴
140
2
votes
4
replies
1.2k
views
2
votes
2
replies
1.1k
views
20 months ago by
mrashad
▴
80
0
votes
1
reply
589
views
updated 20 months ago by
Mensur Dlakic
★
30k
•
written 20 months ago by
Kominist Asmamaw
•
0
0
votes
2
replies
829
views
0
votes
10
replies
3.3k
views
2
votes
2
replies
3.6k
views
1
vote
5
replies
2.3k
views
1
vote
3
replies
1.3k
views
1
vote
9
replies
1.7k
views
5
votes
3
replies
2.1k
views
3
votes
3
replies
1.1k
views
0
votes
3
replies
826
views
0
votes
9
replies
1.7k
views
0
votes
1
reply
1.4k
views
updated 20 months ago by
Ram
45k
•
written 20 months ago by
David Langenberger
11k
13
votes
7
replies
6.7k
views
Forum:
How to learn bioinformatics?
updated 20 months ago by
Samuel Lampa
★
1.3k
•
written 3.4 years ago by
sakichwan
▴
20
2
votes
5
replies
1.5k
views
0
votes
7
replies
2.0k
views
2
votes
4
replies
1.1k
views
updated 20 months ago by
Ram
45k
•
written 20 months ago by
Bioinformática
▴
10
1
vote
3
replies
1.8k
views
2
votes
2
replies
1.1k
views
0
votes
4
replies
1.9k
views
0
votes
1
reply
908
views
updated 20 months ago by
Trivas
★
1.9k
•
written 20 months ago by
biology_inform
▴
60
1
vote
7
replies
1.6k
views
3
votes
2
replies
2.2k
views
2
votes
8
replies
1.8k
views
updated 20 months ago by
dsull
★
7.7k
•
written 20 months ago by
dzisis1986
▴
70
1
vote
1
reply
642
views
26
votes
27
replies
6.1k
views
10 follow
0
votes
1
reply
506
views
0
votes
0
replies
485
views
20 months ago by
nesanemashudu
•
0
Recent Votes
Recent Locations •
All
Turkey, 7 minutes ago
London, 7 minutes ago
Egypt, 8 minutes ago
UK, 8 minutes ago
France, 21 minutes ago
Germany, 26 minutes ago
Finland, 27 minutes ago
Recent Awards •
All
Popular Question to
Ibrahim Tanyalcin
★
1.2k
Teacher to
colindaven
8.0k
Popular Question to
m90
▴
30
Popular Question to
PolenP
•
0
Popular Question to
xiaoleiusc
▴
140
Popular Question to
sacha
★
2.5k
Recent Replies
Answer: X chromosome male and female imputation
by
barslmn
★
2.4k
I think it's better to use the original 900 variants.
If you have genotype information, you can get the fraction of heterozygous variants t…
Comment: Slam-Seq Conversion Rate per Read
by
michael.ante
★
4.0k
Try to switch to percentage view of this graph. Stacked bar charts with different heights can sometimes be misleading.
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
PolenP
•
0
Sorry about that. It's when I align the paired reads together like the left and righ, they should align with common sequence at some ends, …
Answer: Dictys refuses to use CUDA supported pytorch during installation
by
zwjiang
▴
30
I fixed my problem by
```
conda create -y -p /project/spott/zwjiang/conda_envs/dictys_gpu -c conda-forge python=3.9 mamba
conda activat…
Comment: HIV : gtf or gff annotation
by
Ales
▴
50
Thank you for your response! We have just posted the full preprint to BioRxiv (https://www.biorxiv.org/content/10.1101/2025.09.24.675449v1)…
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
curious
▴
890
Just adding some detail here that may help draw some connections with other posts, I did a bunch of sleuthing with selectively trimming dif…
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
cmdcolin
★
4.3k
It's a little unclear what you mean by "I was able to use wgsim, but when I tried aligning the paired-reads, it's not aligning together."
Comment: using packages with conda
by
ATpoint
89k
Just to be sure: You ssh into a remote server, correct? Die you setup the conda environment on your local machine or the remote? Must be th…
Answer: pySCENIC aucell matrix is all 0s
by
Tripfantasy
•
0
Sorry to those of you having the same issue. I haven't been on here in quite some time! I've documented my fix on pySCENIC's github page be…
Comment: [vg giraffe] Unable to add read group to BAM file
by
anovak
▴
180
I think this is still not quite right because I think your tags need to be tab-separated in the output to really be parseable, and here the…
Answer: MAPQ algorithms of Giraffe
by
anovak
▴
180
`vg giraffe` does not use the exact same MAPQ algorithm as bwa-mem. However, its mapping qualities are still meant to be Phred-scale probab…
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
Mensur Dlakic
★
30k
I think only a fraction of sequencing errors can be specified. If a mix of a reference and a mutated genome is included, setting sequencing…
Comment: using packages with conda
by
ATpoint
89k
Cannot reproduce. Is this run via some sort of server/HPC/scheduler/something?
Traffic: 4255 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6