172
votes
41
replies
106k
views
27 follow
43
votes
8
replies
104k
views
updated 5.3 years ago by
onestop_data
▴
330
•
written 7.8 years ago by
ggman
▴
90
57
votes
11
replies
104k
views
8 follow
98
votes
19
replies
100k
views
12 follow
updated 18 months ago by
Ram
45k
•
written 15.2 years ago by
Giovanni M Dall'Olio
28k
31
votes
8
replies
99k
views
8 follow
81
votes
22
replies
98k
views
16 follow
165
votes
64
replies
97k
views
39 follow
103
votes
27
replies
97k
views
21 follow
176
votes
30
replies
96k
views
17 follow
31
votes
10
replies
96k
views
9 follow
updated 2.1 years ago by
Ram
45k
•
written 4.1 years ago by
Nitin Narwade
★
1.6k
73
votes
16
replies
94k
views
12 follow
updated 3.1 years ago by
Pierre Lindenbaum
166k
•
written 13.6 years ago by
Sakti
▴
530
19
votes
14
replies
93k
views
10 follow
updated 18 months ago by
Ken
•
0
•
written 10.5 years ago by
arronslacey
▴
320
133
votes
25
replies
92k
views
20 follow
updated 9 months ago by
pl.terzian
•
0
•
written 11.9 years ago by
deepthithomaskannan
▴
410
72
votes
20
replies
91k
views
15 follow
108
votes
45
replies
90k
views
30 follow
updated 2.6 years ago by
aswinssoman
▴
110
•
written 12.8 years ago by
Mchimich
▴
320
43
votes
15
replies
90k
views
9 follow
139
votes
25
replies
89k
views
14 follow
185
votes
44
replies
87k
views
30 follow
106
votes
12
replies
85k
views
7 follow
updated 2.5 years ago by
Ram
45k
•
written 13.5 years ago by
Bioscientist
★
1.7k
60
votes
15
replies
85k
views
9 follow
121
votes
8
replies
82k
views
30
votes
2
replies
82k
views
122
votes
17
replies
82k
views
8 follow
148
votes
22
replies
82k
views
15 follow
updated 22 months ago by
Kevin Blighe
89k
•
written 7.4 years ago by
Mike
★
1.9k
32
votes
11
replies
82k
views
updated 6.9 years ago by
WouterDeCoster
47k
•
written 6.9 years ago by
mikysyc2016
▴
120
33
votes
4
replies
81k
views
7 follow
updated 5.9 years ago by
abhijit.synl
▴
60
•
written 13.3 years ago by
Tryingtogetthere
▴
180
100
votes
16
replies
80k
views
15 follow
10.4 years ago by
Obi Griffith
20k
99
votes
19
replies
79k
views
13 follow
updated 8 months ago by
alejandrogzi
▴
150
•
written 10.5 years ago by
bongbang
▴
90
13
votes
13
replies
79k
views
54
votes
17
replies
79k
views
11 follow
51
votes
18
replies
79k
views
10 follow
12
votes
9
replies
78k
views
7 follow
updated 2.4 years ago by
Devarakonda
•
0
•
written 10.3 years ago by
vigneshprbh37
▴
30
188
votes
50
replies
78k
views
41 follow
updated 2.6 years ago by
Ram
45k
•
written 14.5 years ago by
Zhangleisdau
▴
340
365
votes
58
replies
78k
views
44 follow
updated 18 months ago by
Ram
45k
•
written 15.1 years ago by
Istvan Albert
102k
149
votes
33
replies
77k
views
19 follow
18
votes
14
replies
77k
views
7 follow
updated 3.4 years ago by
Ram
45k
•
written 10.7 years ago by
marina-orlova
▴
90
68
votes
18
replies
77k
views
17 follow
9
votes
6
replies
76k
views
updated 11.3 years ago by
r.follador
▴
90
•
written 11.3 years ago by
HG
★
1.2k
19
votes
8
replies
76k
views
6 follow
1.2k
votes
206
replies
76k
views
108 follow
updated 23 months ago by
Raony Guimarães
★
1.4k
•
written 14.1 years ago by
Jeremy Leipzig
23k
237
votes
45
replies
75k
views
34 follow
198
votes
46
replies
75k
views
34 follow
updated 4 weeks ago by
Riley J
•
0
•
written 12.6 years ago by
Obi Griffith
20k
20
votes
2
replies
75k
views
updated 9.0 years ago by
Devon Ryan
105k
•
written 9.0 years ago by
hakimelakhrass
▴
80
43
votes
19
replies
75k
views
14 follow
58
votes
4
replies
74k
views
41
votes
16
replies
74k
views
16 follow
117
votes
25
replies
74k
views
14 follow
updated 2.2 years ago by
Miguel
▴
20
•
written 14.2 years ago by
Pierre Lindenbaum
166k
138
votes
21
replies
74k
views
18 follow
42
votes
14
replies
73k
views
9 follow
33
votes
17
replies
73k
views
14 follow
Recent Votes
Recent Locations •
All
Portugal, 2 minutes ago
Memphis, TN, 8 minutes ago
Connecticut, 9 minutes ago
USA, 13 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 21 minutes ago
Whitefish, MT, 28 minutes ago
New York, 41 minutes ago
Recent Awards •
All
Popular Question to
pablo
▴
330
Popular Question to
ZheFrench
▴
590
Popular Question to
kayah
▴
20
Popular Question to
William
▴
20
Popular Question to
cwwong13
▴
40
Recent Replies
Comment: Proper preprocessing for ML after limma, quantile normalization and log2 transfo
by
Mensur Dlakic
★
29k
I have no good idea how to work with data of unknown origin and unknown pre-processing steps.
Somehow, you seem to be reading my answers s…
Comment: Proper preprocessing for ML after limma, quantile normalization and log2 transfo
by
Sib
▴
60
Unfortunately, I cannot use raw data because I am teaching students who are not yet able to analyze raw data. Instead, we use a series matr…
Answer: Small‑Lab Data Management & Analytics Tool – What are your biggest pain points?
by
Darked89
4.7k
I think the best is to strip functionalities to bare essentials: secure storage of the data plus metadata and the backups. For that you may…
Comment: Small‑Lab Data Management & Analytics Tool – What are your biggest pain points?
by
karl.stamm
4.1k
I've seen a few of these posts, and you seem to be highlighting that it is 'lightweight'. I think that's a bad move - what do you think th…
Answer: landscape of RNA types and their functions/ scRNA
by
ATpoint
87k
You are missing the point here. This statement you cite is not about RNA function. What people did there was to add synthetic RNA to the li…
Answer: miRNA alignment and count generation
by
i.sudbery
21k
If you are aligning to a transcriptome based index (like the mature or hairpin fasta files), then you don't need a gff. The gff tells read …
Comment: Analysing gene CNV from TCGA using TCGAbiolinks
by
Matt
•
0
Great, thank you, that's very helpful. It seems if I filter to only query the 'primary tumour' samples from GDC all the samples use the ABS…
Comment: bbsplit : How to configure ambiguous/ambiguous2 parameters in order to consider
by
ZheFrench
▴
590
#name %unambiguousReads unambiguousMB %ambiguousReads ambiguousMB unambiguousReads ambiguousReads assignedReads assignedBases
prima…
Answer: miRNA alignment and count generation
by
Barry Digby
★
1.3k
Align to the hairpins, not the mature miRNA file. This should get you started preparing a `hsa` hairpin file.
If your species differs, …
Comment: Transcript ID
by
ATpoint
87k
Hi, yes ENS*G* is gene and *T* is transcript. The `-0` is (to me knowledge) no Ensembl standard so it is probably custom. Maybe some contex…
Comment: Proper preprocessing for ML after limma, quantile normalization and log2 transfo
by
Mensur Dlakic
★
29k
I do data normalization almost on a daily basis, but not with this type of data. There could be a more useful advice coming from someone wh…
Answer: Cytoscape Node Size Mapping
by
William
▴
20
Oh - I figured it out. Have to set Lock Node Width and Height, and also Fit custom graphic to node.
Comment: Exon-level counts via featureCounts
by
rfran010
★
1.4k
Perhaps you have not also allowed multi-overlapping? (exons from different transcripts of the same gene will overlap each other)
Comment: Deeptools: Custom gcbias plots in R possible?
by
RJDan
•
0
Thanks. I'm looking into using picard.
Comment: Cytoscape Node Size Mapping
by
William
▴
20
Strangely - if I make my own style, it is grayed out, but if click "solid" style - I can set the size.
Traffic: 1760 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6