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121,997 results • Page
264 of 2440
Sort: Rank
Rank
Views
Votes
Replies
1
vote
2
replies
1.3k
views
Flitering Genes in RNA-Seq causes more significant FDR Adjusted P-Val DEGs?
Limma
RNA
Voom
EdgeR
RNA-Seq
updated 2.4 years ago by
ATpoint
89k • written 2.4 years ago by
Saran
▴ 50
1
vote
2
replies
1.5k
views
How to infer CDR1, CDR2, and CDR3 sequences from a TCR chain protein sequence?
TCR
CDR2
CDR3
VDJ
CDR1
2.4 years ago by
nomorewords
• 0
0
votes
0
replies
544
views
How to extract the allele dosage of .vcf.gz after TOPMed imputation?
plink
allele
GWAS
dosage
updated 2.4 years ago by
4galaxy77
2.9k • written 2.4 years ago by
Zulema
• 0
0
votes
2
replies
1.3k
views
cfsan snp pipeline
snp
pipeline
cfsan
updated 2.4 years ago by
janejin
• 0 • written 3.1 years ago by
saifulislam99121
• 0
1
vote
4
replies
1.4k
views
viewing hgvs in genome data viewer
ncbi
hgvs
clinvar
2.4 years ago by
curious
▴ 900
1
vote
4
replies
1.5k
views
How to demultiplex a pooled fastq sequence file and extract each sample sequences
fastq
demultiplexing
files
2.4 years ago by
rishav513
▴ 30
0
votes
0
replies
866
views
ColabFold local heterodimer prediction script making
protein
prediction
AlphaFold
complex
updated 2.4 years ago by
Ram
45k • written 2.4 years ago by
Xylanaser
▴ 80
0
votes
1
reply
1.1k
views
Aggregate isoforms to gene level after de novo transcriptome assembly.
rnaSPAdes
denovo
isoforms
oases
RNAseq
updated 2.4 years ago by
wouter.makkinje
• 0 • written 4.2 years ago by
Twitty
▴ 30
0
votes
2
replies
1.6k
views
How to interpret the title of each sequence in a reference genome fasta file downloaded from Ensembl
reference
fasta
dna
alignment
genome
sequence
updated 2.4 years ago by
Emily
24k • written 2.4 years ago by
hande
• 0
2
votes
3
replies
1.5k
views
trouble getting gene names from biomaRt
biomaRt
R
updated 2.4 years ago by
Emily
24k • written 2.4 years ago by
Barista
▴ 10
0
votes
1
reply
624
views
Error in BLAST by NCBI
PROTEIN
GALAXY
BLAST
NCBI
updated 2.4 years ago by
Ram
45k • written 2.4 years ago by
Sarang
• 0
0
votes
2
replies
1.4k
views
Filtering VCF files
Filtering
GATK
HaplotypeCaller
mapping
VCF
updated 2.4 years ago by
Pierre Lindenbaum
166k • written 2.4 years ago by
chrisgr
▴ 20
2
votes
3
replies
1.5k
views
RPKM normalization
RNASeq
RPKM
updated 11 months ago by
Carlo Yague
9.0k • written 2.4 years ago by
prs
▴ 20
0
votes
1
reply
727
views
PHG - Error in encodePathArrayFromSet()
PHG
phg
updated 2.4 years ago by
lcj34
▴ 420 • written 2.4 years ago by
twrl8
• 0
1
vote
4
replies
1.7k
views
Tumor-infiltrating immune cells
cell
TIMER
immune
Tumor-infiltrating
TPM-normalized
updated 2.1 years ago by
Ram
45k • written 3.2 years ago by
J.farideh76
• 0
2
votes
3
replies
2.2k
views
tophat2 installation error
NGS
tophat
linux
updated 2.4 years ago by
Ram
45k • written 2.4 years ago by
Adyasha
• 0
5
votes
2
replies
1.4k
views
ERCC normalization within DESeq2
normalization
ERCC
size.factors
DESeq2
updated 2.4 years ago by
ATpoint
89k • written 2.4 years ago by
Assa Yeroslaviz
★ 1.9k
0
votes
0
replies
693
views
Downloading smart-seq2 fastq files from NCBI GEO
smart-seq
geo
scRNA-seq
ncbi
2.4 years ago by
malonzm1
▴ 20
7
votes
13
replies
3.1k
views
Help with error in snpEff command
snpEff
2.4 years ago by
Chris
▴ 360
0
votes
1
reply
1.2k
views
Chip-Seq data for RNA Polymerase 1
polymerase
CHIP
pol1
Chip-Seq
1
updated 2.4 years ago by
Carlo Yague
9.0k • written 2.4 years ago by
Rajendra KC
▴ 20
2
votes
3
replies
1.0k
views
Variants that are different between the clown and control
Difference
VCF
updated 2.4 years ago by
GenoMax
154k • written 2.4 years ago by
anasjamshed
▴ 140
3
votes
4
replies
1.3k
views
p-fold plot
DEGs
2.4 years ago by
shamza
• 0
1
vote
3
replies
1.3k
views
Error while running GATK4 Mutect2 in Galaxy
Mutect2
GATK4
updated 2.4 years ago by
Pierre Lindenbaum
166k • written 2.4 years ago by
anasjamshed
▴ 140
1
vote
6
replies
1.5k
views
Why is my code only printing the first position?
perl
homework
updated 2.4 years ago by
Jeremy Leipzig
23k • written 2.4 years ago by
CourtneyGoRawr
▴ 10
5
votes
10
replies
1.5k
views
Error when viewing a bam file
samtools
updated 2.3 years ago by
Ram
45k • written 2.4 years ago by
Chris
▴ 360
0
votes
1
reply
773
views
Why do I get zero results when doing DE on microarray data with lemma?
microarray
DE
limma
affymetrix
updated 2.4 years ago by
Basti
★ 2.1k • written 2.4 years ago by
i.am.filippov
▴ 10
1
vote
2
replies
1.1k
views
Using the 27-primates UCSC Multiz Alignment
Multiz
UCSC
conservation
alignment
2.4 years ago by
Daniel
▴ 40
0
votes
2
replies
1.5k
views
Genecount-difference between HT-seq count, RSEM, and Kallisto
Kallisto
RSEM
RNAseq
HTseqcount
TPM
2.4 years ago by
tvibhaps
▴ 10
0
votes
2
replies
1.4k
views
scRNA seq integration
integration
seq
seurat
scrna
2.4 years ago by
friguiahlem8
▴ 30
4
votes
2
replies
1.9k
views
Snakemake: Missing output files:
snakemake
2.4 years ago by
Joshua
▴ 20
0
votes
0
replies
439
views
SigCom LINCS generank table scores
perturbagens
LINCS
SigCom
2.4 years ago by
ArcticPear
• 0
9
votes
5
replies
3.5k
views
DESeq2 model matrix not full rank
full-rank
model-matrix
deseq2
updated 2.4 years ago by
GenoMax
154k • written 4.3 years ago by
Assa Yeroslaviz
★ 1.9k
6
votes
5
replies
2.0k
views
Error in colorRamp2(c(quantile(mean)[1], quantile(mean)[4], c("white", : argument "colors" is missing, with no default
scRNAseq
complexheatmap
updated 2.4 years ago by
Trivas
★ 1.9k • written 2.4 years ago by
imran
• 0
3
votes
2
replies
1.1k
views
Changing a fasta header
fasta
changingheader
preprocessing
header
updated 2.4 years ago by
rpolicastro
13k • written 2.4 years ago by
Diana Nadia
▴ 10
5
votes
1
reply
1.3k
views
Herald:
The Biostar Herald for Monday, May 01, 2023
herald
updated 2.4 years ago by
cmdcolin
★ 4.3k • written 2.4 years ago by
Biostar
3.6k
2
votes
5
replies
1.6k
views
RNA SEQ reads assembly for illumina sequenced data
NGS
linux
nanopore
updated 2.4 years ago by
Ram
45k • written 2.4 years ago by
Adyasha
• 0
1
vote
3
replies
2.1k
views
HaplotypeCaller VCF depth is greater than the number of reads in bam
HaplotypeCaller
vcf
gatk
updated 2.4 years ago by
pragnapcu
▴ 10 • written 4.5 years ago by
wang.yiguan
▴ 10
0
votes
2
replies
1.5k
views
Why the number of reads in bam generated by GATK haplotype caller are more than the bam generated after GATK baserecalibrator
BaseRecalibrator
BAM
GATK
READ
HaplotypeCaller
2.4 years ago by
pragnapcu
▴ 10
1
vote
4
replies
1.2k
views
mRNA counts
mRNA
counts
updated 2.4 years ago by
swbarnes2
15k • written 2.4 years ago by
t.ru
▴ 20
0
votes
0
replies
605
views
DNA-Ligand Molecular Dynamics Simulation
Simulation
Gromacs
MDS
Dynamic
Molecular
2.4 years ago by
bhavya2269
• 0
1
vote
4
replies
2.2k
views
TCGAbiolinks error
TCGAbiolinks
R
updated 2.4 years ago by
Ram
45k • written 2.5 years ago by
Elizabeth
▴ 10
0
votes
2
replies
1.2k
views
scRNA-seq cell type mapping neuron VS glia proportion
scRNA-seq
glia
Clustering
neuron
Seurat
2.4 years ago by
Song
▴ 10
10
votes
10
replies
5.0k
views
6 follow
activity of unloaded/unassembled Tn5
next-gen-sequencing
updated 10 months ago by
LChart
5.1k • written 7.6 years ago by
zhaohainancau
• 0
0
votes
3
replies
3.1k
views
Error in loading SummarizedExperiment
DESeq2
Mac
R
SummarizedExperiment
2.4 years ago by
charleslv128
• 0
0
votes
1
reply
689
views
keeping just the best hit . repeats
hit
best
updated 2.4 years ago by
GenoMax
154k • written 2.4 years ago by
csag6433
• 0
2
votes
4
replies
2.3k
views
Missing ID and filter column in a vcf file
vcf
2.4 years ago by
Chris
▴ 360
0
votes
0
replies
578
views
Is it normal to get truncated identifiers after applying SQL schema of RegaDB?
regadb
postgresql
hiv
2.4 years ago by
Mordovian Guy
• 0
3
votes
4
replies
3.0k
views
Is my estimated genome coverage correct?
NCBI
Genome
Sequencing
updated 2.4 years ago by
Mensur Dlakic
★ 30k • written 2.4 years ago by
apcreyes29
• 0
3
votes
1
reply
744
views
How to transfer files from Windows to Linux?
Linux
RNAseq
updated 2.4 years ago by
ATpoint
89k • written 2.4 years ago by
mrymrahimi70
• 0
5
votes
8
replies
3.9k
views
snpeff install error
snpeff
updated 2.4 years ago by
Ram
45k • written 2.4 years ago by
bestone
▴ 30
121,997 results • Page
264 of 2440
Recent Votes
Answer: SNP calling ONT sequenced files
Answer: SNP calling ONT sequenced files
Answer: Combine a directory of GVCF files with gatk CombineGVCFs
Answer: Combine a directory of GVCF files with gatk CombineGVCFs
A: Trimmomatic Error: Unable to detect quality encoding
A: Trimmomatic Error: Unable to detect quality encoding
Answer: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
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Comment: Pseudogene - scarce info
by
mf810
• 0
That's actually a huge help, thank you so much! Even if the finding is there's no relevant findings, it's nice to have someone else check…
Answer: Transverse data
by
basu
• 0
Sounds like you’ve got a data party going on—too many duplicates crashing it! If you need a quick fix for those pesky repeats, maybe check …
Answer: Pseudogene - scarce info
by
Mensur Dlakic
★ 30k
> The gene plays a pivotal role in some pathways of the immune response, but tbh I could'nt find any mention of my pseudogene on the linked…
Answer: SNP calling ONT sequenced files
by
cfos4698
★ 1.2k
My personal preference is using [clair3][1]. I'm unsure if CLC didn't work because your compute resources are too limited, or if there are …
Comment: HIV NL4-3 transcriptome fasta
by
Ales
▴ 50
Hi, Wanted to update here that full transcriptome annotations for thousands of hiv genomes (including NL4-3) are now available at https://…
Answer: HIV NL4-3 transcriptome fasta
by
Ales
▴ 50
You can get full transcriptome annotation for the NL4-3 genomes: https://ccb.jhu.edu/HIV_Atlas/11676/AF324493.2 . Note the accession ID tho…
Answer: Doubt on docking
by
Mensur Dlakic
★ 30k
I think you are wrongly assuming that we can help you with this without knowing what is the protein of interest. A general answer is that …
Answer: Difficulty running FoldX in linux
by
Mensur Dlakic
★ 30k
The post looks much better now, so you did something. The preview here works fine. It simply can't be that the preview for your original po…
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GenoMax
154k
Black box software has its cons but in instances like what OP needs that may be the only viable option. Their use limits reproducibility as…
Comment: downloading raw bam files from pacbio sequencer
by
GenoMax
154k
Have you checked : https://www.pacb.com/connect/datasets/
Comment: TMM-Normalization
by
kalavattam
▴ 380
No, but a modified version of TMM does: “GeTMM.” See the paper [here](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-0…
Comment: Difficulty running FoldX in linux
by
strayeroliver
• 0
Responding to your answer. - I spent a lot of time formatting it just right, using the ``` methodology you mentioned. It looks very good o…
Comment: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
by
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Found the docs: https://www.nextflow.io/docs/latest/process.html#multiple-input-files | Arity | Name pattern | Staged file names | |---|--…
Comment: Dorado in PowerShell on Windows
by
jared.andrews07
★ 19k
No more than running it on native Linux (as that's what WSL is at this point).
Answer: SNP calling ONT sequenced files
by
colindaven
8.0k
The quality of (modern, SUP basecalled, but certainly not fast basecalled) ONT sequences should be fine, especially for bacterial SNP call…
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