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122,018 results • Page
302 of 2441
Sort: Rank
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Votes
Replies
0
votes
0
replies
641
views
Reference panel when doing ADMIXTURE
admixture
2.7 years ago by
Karan
▴ 10
1
vote
4
replies
1.7k
views
Alternatives to ProtExcluder in repeat annotation/MAKER?
repeats
esl-fetch
annotation
ProtExcluder
MAKER
2.6 years ago by
evoecogen
▴ 30
0
votes
6
replies
3.4k
views
how to get an average ROC curve after 10-fold cross validation in r
r
cross-validation
curve
roc
2.7 years ago by
Sara
• 0
6
votes
2
replies
1.6k
views
Seurat or Bioconductor for single cell RNA seq
single-cell
bioconductor
seurat
RNAseq
updated 2.7 years ago by
Basti
★ 2.1k • written 2.7 years ago by
Sandra
▴ 10
7
votes
3
replies
17k
views
fastq-dump split-spot and skip-technical
fastq-dump
split-spot
skip-technical
updated 2.7 years ago by
Larissa Graciano
• 0 • written 9.6 years ago by
Shicheng Guo
★ 9.6k
0
votes
2
replies
1.0k
views
Miseq mothur error with SOP in galaxy - Help please!
mothur
miseq
16s
Galaxy
sop
updated 2.7 years ago by
colindaven
8.0k • written 2.7 years ago by
Melissa
• 0
0
votes
5
replies
1.4k
views
Find corresponding branch from gene tree in species tree
phylogeny
family-tree
gene
species
phylogenetics
updated 2.7 years ago by
andres.firrincieli
3.9k • written 2.7 years ago by
Charlotte West
▴ 70
2
votes
3
replies
1.5k
views
6 follow
How to summarize the expression of a gene when having expression data from different transcripts of that gene
rnaseq
expression
updated 2.7 years ago by
i.sudbery
22k • written 2.7 years ago by
jeni
▴ 90
0
votes
1
reply
847
views
How can I creating multisample VCF file ?
VCF
updated 2.7 years ago by
Ram
45k • written 2.7 years ago by
eennadi
▴ 40
4
votes
0
replies
766
views
How to identify the batch informations from the sample ID?
batch-correction
TCGAbatch
DESeq2
TCGA
updated 2.7 years ago by
Ram
45k • written 2.7 years ago by
DareDevil
★ 4.4k
0
votes
2
replies
1.0k
views
Adaptor sequences in GIAB samples
illumina
GIAB
adaptor
cutadapt
2.7 years ago by
Mk
▴ 10
0
votes
2
replies
1.1k
views
exchange the monocle data with Seurat
monocle3
Seurat
2.7 years ago by
alghezim1
• 0
0
votes
6
replies
1.8k
views
Differentially gene expression analysis
Limma
Deseq
R
updated 2.7 years ago by
Victor J. Fernández
▴ 40 • written 2.7 years ago by
Nai
▴ 50
0
votes
0
replies
1.0k
views
News:
Introduction to GWAS course (6th edition) - June, 5th-8th
GWAS
R
updated 2.7 years ago by
Ram
45k • written 2.7 years ago by
Physalia-courses
★ 2.7k
0
votes
2
replies
979
views
docker build Command Works Yet It Does Not Create A Docker Container
Linux
build
R
docker
2.7 years ago by
Indira
▴ 10
0
votes
3
replies
993
views
pileup consolidation tool
RNAseq
pileup
jacusa
samtools
2.7 years ago by
noodle
▴ 650
0
votes
2
replies
890
views
How I know the genome assembly quality by the low coverage Pacbio data ?
genome
Pacbio
2.7 years ago by
wdpang
• 0
5
votes
3
replies
1.6k
views
How to map and annotate gene symbols to gene type?
Ensembl
RefSeq
UCSC
biomart
RNA-Seq
updated 2.7 years ago by
GenoMax
154k • written 2.7 years ago by
mohammedtoufiq91
▴ 270
0
votes
1
reply
1.4k
views
Stringtie prepDE.py script
deseq2
stringtie
updated 2.7 years ago by
Buffo
★ 2.4k • written 2.7 years ago by
Aiswarya
▴ 20
3
votes
4
replies
3.3k
views
BLAST reference genome indexing
blastn
fasta
shell
updated 2.7 years ago by
GenoMax
154k • written 2.7 years ago by
bhumm
▴ 200
0
votes
2
replies
952
views
Averaging across multiple proteomic experiments
statistics
proteomics
R
updated 2.7 years ago by
ATpoint
89k • written 2.7 years ago by
bhumm
▴ 200
0
votes
2
replies
925
views
Copy Number Variants, where to start?
CNV
annotation
2.7 years ago by
paolo
▴ 70
6
votes
6
replies
2.2k
views
command line - how to change name of multiple files at the same time
bash
line
command
script
updated 2.7 years ago by
shenwei356
8.7k • written 2.7 years ago by
tiziana
• 0
0
votes
1
reply
2.4k
views
rDGIdb - VCF input error using locateVariant command (VariantAnnotation)
genome
sequence
updated 2.7 years ago by
Gaurav
• 0 • written 5.9 years ago by
tarapcsakszabolcs
• 0
0
votes
0
replies
613
views
mosdepth coverage & transcripts per million
TPM
coverage
metagenome
mosdepth
2.7 years ago by
lintonf
• 0
0
votes
2
replies
1.6k
views
FATAL: While performing build: build image size <= 0 - Issues With Singularity
R
Docker
Singularity
2.7 years ago by
Indira
▴ 10
0
votes
1
reply
1.1k
views
Dealing with variable sequencing depth.
GATK
downsampling
WGS
BCFTools
updated 2.3 years ago by
Ram
45k • written 2.7 years ago by
a
• 0
0
votes
5
replies
2.1k
views
Error: ##fileformat=VCFv4.2 does not exist
Pharmcat
VCF
updated 2.7 years ago by
sbstevenlee
▴ 480 • written 2.7 years ago by
taniamahmood38
▴ 60
0
votes
1
reply
880
views
Extract species-specific SNPs from VCF files
vcf
SNPs
updated 2.3 years ago by
Ram
45k • written 2.7 years ago by
GR
▴ 400
0
votes
0
replies
513
views
Questions about HVGs and HEGs in single cell research
single-cell
machine-learning
updated 2.7 years ago by
Ram
45k • written 2.7 years ago by
me
• 0
0
votes
0
replies
621
views
average expression function and pct
seurat
average
pct
expression
and
2.7 years ago by
rasing02
• 0
0
votes
0
replies
451
views
GoSemSIm - function mgeneSim() is resulting in similarity matrix without 1s od diagonal
vs
Gosim
GoSemSIm
2.7 years ago by
eliska.ochodkova
• 0
4
votes
2
replies
1.0k
views
Database with gene family annotations
RNA-seq
database
2.7 years ago by
kjs22
▴ 20
3
votes
10
replies
3.5k
views
Error with FindConservedMarkers()
FindConservedMarkers
2.7 years ago by
Chris
▴ 360
4
votes
3
replies
1.6k
views
comparing two metagenomics data sets
metagenomics
updated 2.7 years ago by
Mensur Dlakic
★ 30k • written 2.7 years ago by
arshad1292
▴ 110
1
vote
2
replies
897
views
Can't view the last rows
scRNA-Seq
updated 2.7 years ago by
brunobsouzaa
▴ 840 • written 2.7 years ago by
Chris
▴ 360
0
votes
3
replies
2.2k
views
General approach for unsupervised clustering of bulk RNAseq samples and deriving/applying gene signature
clustering
RNAseq
DESeq2
2.7 years ago by
Mat
▴ 80
0
votes
0
replies
1.4k
views
Extract different variants of a vcf file comparing to other vcf files
bedtools
mutect2
vcftools
gatk
updated 2.3 years ago by
Ram
45k • written 2.7 years ago by
minoo
▴ 10
1
vote
2
replies
2.2k
views
make BED file from existing BIM and FAM files
plink
updated 2.7 years ago by
chrchang523
11k • written 2.7 years ago by
josephine.henry
• 0
1
vote
5
replies
2.1k
views
BWA-mem not working with Snakemake + singularity
snakemake
bwa
singularity
2.6 years ago by
brunobsouzaa
▴ 840
2
votes
3
replies
3.1k
views
download a set of proteome from uniprot
uniprot
updated 2.6 years ago by
Ram
45k • written 2.7 years ago by
Juke34
9.3k
2
votes
8
replies
3.4k
views
calctruequality in bbmap
Assembly
BBtools
calctruequality
q score
BBmap
updated 2.7 years ago by
Andreas
★ 2.5k • written 7.4 years ago by
coyk
▴ 10
0
votes
3
replies
2.4k
views
Tool to combine Germline Variant call from different variant callers
haplotypecaller
gatk
snps
2.7 years ago by
rohitsatyam102
▴ 940
6
votes
4
replies
1.5k
views
Equivalent to SeqMan alignment tool
SeqMan
alignments
2.7 years ago by
A_heath
▴ 170
5
votes
12
replies
3.6k
views
Subbmission Data
RNA-seq
updated 18 months ago by
Ram
45k • written 2.7 years ago by
GiV17
▴ 50
1
vote
2
replies
1.3k
views
Visualization of Enrichment score for spatial 10x visium samples
visium
transctiptome
10x
enrichment
scores
spatial
2.7 years ago by
Omics data mining
▴ 260
0
votes
6
replies
2.1k
views
Issue in import files in Metaboanalyst
Metaboanalyst
R
updated 2.6 years ago by
Ram
45k • written 2.7 years ago by
Andrea
▴ 10
0
votes
3
replies
1.2k
views
CNV Prediction Tools
NGS
Variant
CNV
Calling
updated 2.7 years ago by
Quentin M
▴ 60 • written 2.7 years ago by
adarsh
▴ 60
0
votes
3
replies
2.9k
views
How to unzip a file with .bgz extention
.bgz
unzip
updated 2.7 years ago by
GenoMax
154k • written 2.7 years ago by
taniamahmood38
▴ 60
1
vote
1
reply
971
views
Variant calling on synthesized DNA
Nanopore
Calling
MinION
Variant
sequencing
SNP
Python
updated 2.7 years ago by
colindaven
8.0k • written 2.7 years ago by
stan.aanhane
▴ 30
122,018 results • Page
302 of 2441
Recent Votes
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Answer: 1 vs 1 DEG analysis in scrna seq data
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I visited the website, but I couldn't understand what problem the software solves. You need to do a much better job of communicating the p…
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How have these gene lists been obtained?
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> I used the first read sequence from ERR322446.filtered.A.fq as the seed `ERR322446` appears to be a human sample. Did you convert the fa…
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Hi Rob, sorry for the late question. I was wondering though, if I can also quantify transposable elements using oarfish? Should I increas…
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The only option you have is to treat every single cell as a replicate. That has the obvious downside that any effect can be a donor-unique …
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Yes, we plan to make English the primary language of the Brave UI.
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If your bacterial species is a (human) pathogen, you might want to check outbreak analysis papers of that species. In general, you find t…
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ok, missed that ... in any case that should not happen indeed. How did you determine that the files are not equal? I can indeed also see t…
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45k
Do you have a plan to make an English version of the UI?
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This can visualize the parameters of the generated workflow, software, and scripts, and manage the docker process of the script, software, …
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine
by
ATpoint
89k
Can you summarize in one sentence what the use case is? Is this a workflow manager?
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