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193 results • Page
4 of 4
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0
votes
0
replies
138
views
News:
Cellosaurus release 49 is available
cell
biocuration
line
database
news
knowledgebase
6 days ago by
Amos Bairoch
▴ 120
0
votes
0
replies
75
views
Xenium multi sample data
batch
annotation
cell
Xenium
effect
21 hours ago by
Omics data mining
▴ 260
0
votes
0
replies
17
views
Server or aws cloud- which one is better for gatk pipeline
aws
server
calling
gatk
cloud
variant
1 hour ago by
ashaneev07
▴ 20
1
vote
0
replies
148
views
.lgen file has 3+ different alleles
PLINK
lgen
ped
updated 2 days ago by
zx8754
11k • written 5 days ago by
Emilie
▴ 10
0
votes
0
replies
147
views
SIngle cell analysis
Seurat
scRNA-seq
Harmony
DoubletFinder
Merge
6 days ago by
Jeyong
• 0
0
votes
0
replies
119
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
2 days ago by
belloy
• 0
0
votes
0
replies
102
views
Cellphonedb results
cpdb
visulization
cellphonedb
2 days ago by
piotto
▴ 20
0
votes
0
replies
102
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
2 days ago by
Scott McKay
▴ 30
0
votes
0
replies
179
views
CellPhoneDB results
cellphonedb
cpdb
cell_surface_proteins
updated 2 days ago by
GenoMax
142k • written 10 weeks ago by
piotto
▴ 20
0
votes
0
replies
53
views
Pathway analysis of Bacteria from denovo genome assembly
KEGG-KASS
WGS
Pathway
denovo
updated 9 hours ago by
Ram
43k • written 13 hours ago by
mathavanbioinfo
▴ 90
0
votes
0
replies
117
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
3 days ago by
DGTool
• 0
0
votes
0
replies
99
views
Chance for trained without experience
bio
updated 19 hours ago by
ATpoint
82k • written 19 hours ago by
shehab
• 0
0
votes
0
replies
41
views
Long reads and fixing of mate-pair issues/marking duplicates with samtools
mate-pair
samtools
alignment
4 hours ago by
Zeng Hao
▴ 40
3
votes
0
replies
1.1k
views
Tool:
Sars-Cov-2 Genome & ACE 2 Exploration
sequence
alignment
SNP
genome
3 days ago by
Ibrahim Tanyalcin
★ 1.2k
0
votes
0
replies
115
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 2 days ago by
Pierre Lindenbaum
161k • written 2 days ago by
sarumonsus
• 0
0
votes
0
replies
106
views
Cox Model with interaction item interpretation
Cox
2 days ago by
Bine
▴ 60
1
vote
0
replies
191
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
6 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
154
views
Homer motif analysis
Homer
4 days ago by
daffodil
▴ 10
0
votes
0
replies
101
views
Use of annotation of integrated Seurat object in single sample
Seurat
6 days ago by
Bine
▴ 60
0
votes
0
replies
111
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 2 days ago by
Ram
43k • written 2 days ago by
sidrah.maryam
▴ 50
0
votes
0
replies
98
views
Normalizing AMR gene count data
abundance
RGI
updated 2 days ago by
Ram
43k • written 2 days ago by
arshad1292
▴ 100
0
votes
0
replies
103
views
Imputation of missing genotypes
panel
beagle
imputation
1 day ago by
analyst
▴ 50
0
votes
0
replies
109
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
3 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
6
views
Conda severely broken after attempting mamba install
biopython
conda
mamba
pycosat
20 minutes ago by
kacollier
▴ 30
0
votes
0
replies
37
views
Summary Statistics SNPs not found in Target data
SNP
plink
PRS
updated 3 hours ago by
Ram
43k • written 4 hours ago by
curious_butterfly
• 0
0
votes
0
replies
126
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
3 days ago by
KHURRAM SHAHZAD
• 0
0
votes
0
replies
69
views
News:
Online course: Introduction to Deep Learning
Python
Deep-Learning
Convolutional-Neural-Network
Machine-Learning
updated 9 hours ago by
Ram
43k • written 14 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
48
views
Enhanced Volcano-Cut off
foldchange
enhancedvolcano
updated 3 hours ago by
Ram
43k • written 8 hours ago by
odi
▴ 10
0
votes
0
replies
152
views
Job:
Postdoctoral Position in Bioinformatics - Mainz, Germany
NGS
Genomics
Post-doc
R-loops
updated 6 days ago by
Ram
43k • written 6 days ago by
4r-rtg
• 0
0
votes
0
replies
115
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
3 days ago by
Christopher
• 0
0
votes
0
replies
106
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
1 day ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
136
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
2 days ago by
Biostar
2.7k
0
votes
0
replies
134
views
Empty table plot using plotGseaTable()
FGSEA
5 days ago by
Chris
▴ 280
0
votes
0
replies
55
views
Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep
vcf
gnomad
8 hours ago by
asalimih
▴ 60
0
votes
0
replies
138
views
vcf procesing for ML antigen prediction
formats
vcf
fastaq
HLA_imputation
HLA_typing
5 days ago by
Javier
• 0
0
votes
0
replies
84
views
monocle 3-- Could not get node in small cluster
monocle3
1 day ago by
synat.keam
▴ 100
0
votes
0
replies
108
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 6 days ago by
Ram
43k • written 6 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
101
views
vdjtools
vdjtools
2 days ago by
yueli7
▴ 250
0
votes
0
replies
80
views
meffil.snp.concordance
meffil
methylation
snp_concordance
1 day ago by
kyj222637
• 0
0
votes
0
replies
130
views
IGV interpretation for ATM gene for chromosome 11 for a deceased partient suspected of having melanoma
genetic
Variant
predisposition
5 days ago by
mikemakaveli1
• 0
0
votes
0
replies
93
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
2 days ago by
Javier
• 0
0
votes
0
replies
131
views
Modify plot R mtDNA indel
plot
mtDNA
R
5 days ago by
marco.barr
▴ 90
0
votes
0
replies
71
views
Blog:
Overview of Nanopore Sequencing
biotech
1 day ago by
usa.cd.genomics
• 0
193 results • Page
4 of 4
Recent Votes
A: How to get SNP identifiers from VCF file?
Answer: How can I analyze normalized expression data?
Answer: How can I analyze normalized expression data?
Answer: Pruning Phylogenetic Trees and Bootstrap Values
Difference between Pysam Pileup and Fetch
Answer: Where can I download some example BAM files?
Comment: Where can I download some example BAM files?
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Recent Awards •
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Popular Question
to
kacollier
▴ 30
Popular Question
to
rackbersingh
• 0
Popular Question
to
DKA
▴ 40
Centurion
to
mathavanbioinfo
▴ 90
Popular Question
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graeme.thorn
▴ 100
Popular Question
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nhaus
▴ 360
Popular Question
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Chris
▴ 280
Recent Replies
Answer: Seurat CellCycleScoring – confused about the proper order of operations when usi
by
Li
• 0
I‘m not an expert in sctransform or cellcyclescoring. But I think it's because sctransform creates a new assay named "SCT", which is differ…
Comment: How can I analyze normalized expression data?
by
mnx0723
• 0
thank you for comment
Comment: Pruning Phylogenetic Trees and Bootstrap Values
by
Zeng Hao
▴ 40
Dear Klaus, Thank you for the reply. If I could clarify with an example: With this tree, B0----------------- A -| B1----------…
Answer: Contig assembly task, errors
by
Philipp Bayer
8.4k
Feels a bit strange for an aptitude test, feels more like homework. 1) seems OK to me, just chuck them into CAP3 and see what falls out.…
Comment: Help with Biopython for Beginner
by
Pierre Lindenbaum
161k
Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the cod…
Answer: bcftools - reducing to "sites-only"?
by
Pierre Lindenbaum
161k
bcftools view -G in.vcf.gz <!-- Diabetic foot ulceration (DFU) is a devastating complication of diabetes whose pathogenesis rema…
Comment: Filtering Multi-sample VCF file for all except one Genotype
by
schmince
• 0
I probably got some of the vocabulary wrong. I thought that "Dom HOR2932 HOR3036 HOR3726 KWSBambina Rec S42IL_124" were representing my ge…
Comment: featureCounts output assigned value higher than and HISAT2 mapping.
by
Ram
43k
It's featureCount**s**, not featureCount. I've edited your post and fixed all mentions of featureCounts.
Comment: kinannote software installation problems
by
Emanoelle
• 0
Hey, I know it's been 5 years but I have the same issue. When I run the test the software is unable to perform and always deliver the follo…
Comment: STAR aligner error
by
Ram
43k
If they can't help you, we probably can't do much either. But we can optimize your STAR command. BAM SortedByCoordinate is the worst settin…
Answer: Obtaining Infinium Methylation450K manifest for hg38
by
marco.barr
▴ 90
Hi, you can check it from github here: [https://zwdzwd.github.io/InfiniumAnnotation][1]. I don't know if this is what you are looking fo…
Comment: RNA seq analysis
by
ATpoint
82k
It makes absolutely no sense to conduct such an analysis. I strongly discourage you to even start with it. Results will be utterly nonsense…
Comment: Differentail gene expression results
by
swbarnes2
14k
Cross-posted: https://support.bioconductor.org/p/9158194/
Answer: Seurat V5 integration
by
Bastien Hervé
5.3k
It will depend on your context and question. I guess you will want to compare gene expression between your conditions within cell types …
Answer: Error in plotting PCA plot in seurat
by
Adam
▴ 30
You get this error when you try to compare two data frames that have different dimensions. Try using the traceback() command to figure out …
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