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121,618 results • Page 581 of 2433
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3
votes
4
replies
1.4k
views
Add words at beginning and end of the same line for the FASTA header line with sed
fasta sed
updated 3.9 years ago by 21k • written 3.9 years ago by ▴ 10
2
votes
1
reply
806
views
looking for interaction tools
Interaction
updated 2.1 years ago by 45k • written 3.9 years ago by • 0
1
vote
8
replies
5.1k
views
How to solve an error while installing Hmisc package in R?
Hmisc R
updated 3.9 years ago by 45k • written 3.9 years ago by • 0
3
votes
3
replies
1.5k
views
Exosome sequencing free data
exosome
updated 3.9 years ago by 152k • written 3.9 years ago by ★ 4.4k
3
votes
14
replies
8.8k
views
remote command line BLAST job ends in CPU error and gives MBEDTLS version mismatch
blastn mbedtls blast linux blast+
updated 18 months ago by ▴ 40 • written 4.3 years ago by • 0
0
votes
0
replies
511
views
Where I can find splice-leader (SL) sequence set ?
SL-leader trans-splicing
3.9 years ago by praasu ▴ 40
1
vote
4
replies
2.3k
views
PRSice "command not found"
Command
3.9 years ago by aredha2 ▴ 10
3
votes
4
replies
1.6k
views
isolate adapter contamination reads from fastq file using python
python genomics regex
updated 2.5 years ago by 45k • written 3.9 years ago by ▴ 80
0
votes
0
replies
727
views
Exporting list of enriched motif sequences from CentriMo in MEME Suite
motif analysis MEME motifs CentriMo
3.9 years ago by cvenkat95 ▴ 10
0
votes
4
replies
1.8k
views
Performing population stratification based on GWA tutorial
gwas gwa populationstratification plink
updated 3.9 years ago by ▴ 650 • written 3.9 years ago by • 0
6
votes
1
reply
4.5k
views
Change location of 'fragments' in multiome Seurat file
RNA-Seq R Seurat Signac ATAC-Seq
3.9 years ago by V ▴ 420
0
votes
2
replies
877
views
Muliple file selection on FTP galaxy server
ftp galaxy folfer
updated 3.9 years ago by 21k • written 3.9 years ago by • 0
0
votes
0
replies
671
views
Queries regarding NGS
Microarray NGS Amplicon
updated 2.5 years ago by 45k • written 3.9 years ago by • 0
0
votes
2
replies
1.2k
views
Request for the process about install 'fastANI' on MacOS
Linux MacOS
updated 2.5 years ago by 45k • written 3.9 years ago by • 0
1
vote
3
replies
1.7k
views
Whole exome processing using python or R
SRA
updated 2.5 years ago by 45k • written 3.9 years ago by ▴ 70
4
votes
4
replies
2.3k
views
SRA/ENA library layout is inconsistent with the data source
ENA fastq illumina SRA
3.9 years ago by tomas4482 ▴ 430
0
votes
1
reply
931
views
Detecting NUMTS (nuclear mitochondrial sequences) in the whole genome sequenced data
genome-mining mitochondrial-genome pseudogenes NuMTs
updated 2.5 years ago by 45k • written 3.9 years ago by ▴ 30
0
votes
0
replies
655
views
Unexpected Std::alloc Error Thrown During Etetoolkit Image Rendering
SVG phylogenetics etetoolkit
3.9 years ago by bdighera • 0
0
votes
1
reply
865
views
SNPs Datasets
Copy Datasets SNPs Diseases Variation Number
updated 3.9 years ago by 89k • written 3.9 years ago by • 0
1
vote
2
replies
1.1k
views
Search PDB-format files for residue contacts
pdb structure coordinates
updated 3.9 years ago by ▴ 380 • written 3.9 years ago by ▴ 10
0
votes
2
replies
2.1k
views
Sequence length and quality length are different in fastq file
fastq
3.9 years ago by miles.anderson ▴ 10
0
votes
0
replies
1.3k
views
Job: HIRING: Data Brokers and Data Broker Supervisor at UCSC
genomics UC DNA
updated 2.4 years ago by 45k • written 3.9 years ago by ▴ 30
1
vote
2
replies
1.2k
views
hisat2 | samtools server vs cluster error
slurm hisat2 samtools
3.9 years ago by kinase • 0
2
votes
3
replies
3.1k
views
NMF tools for scRNA analysis
NMF scRNA
updated 3.9 years ago by ▴ 120 • written 4.6 years ago by ▴ 10
1
vote
2
replies
1.3k
views
methylation beta distribution (minfi generated)
array methylation
3.8 years ago by anikb ▴ 40
0
votes
1
reply
1.5k
views
Ranking gene list for GOrilla gene ontology enrichment analysis
enrichment GOrilla rna-seq ontology GO
updated 3.9 years ago by ▴ 320 • written 3.9 years ago by • 0
4
votes
1
reply
1.4k
views
Trio de novo analyses
WGS Trio denovo
updated 3.9 years ago by ▴ 290 • written 3.9 years ago by ▴ 170
3
votes
3
replies
4.0k
views
How to export count data as .csv file in Seurat
Seurat countdata R
updated 3.9 years ago by ▴ 270 • written 3.9 years ago by ▴ 30
0
votes
0
replies
784
views
Job: HIRING: Bioinformatician and Sr. Bioinformatician at UC Santa Cruz
pathogen-genomics UC
updated 2.4 years ago by 45k • written 3.9 years ago by ▴ 30
8
votes
6
replies
1.5k
views
change name several files
bash
3.9 years ago by gubrins ▴ 350
0
votes
0
replies
554
views
What's the default parameter for flanking sequence in mirdeep2? How can I adjust it?
miRDEEP2 parameter sequence flanking
3.9 years ago by weixuchu63 ▴ 10
0
votes
6
replies
2.1k
views
How to get the coverage information in chip seq for TSS and genebody
Genome ChIP-Seq DNA
3.9 years ago by luckysardar171 ▴ 20
2
votes
2
replies
1.2k
views
What is the best program or way to solve undefined protein subcellular localizations?
localization psortb prediction cello subcellular
3.9 years ago by BATMAN • 0
17
votes
10
replies
8.0k
views
10 follow
Forum: Linearize fasta files
fasta code-golf
updated 3.9 years ago by ▴ 80 • written 6.4 years ago by 16k
0
votes
1
reply
973
views
How do I start clue GO in R using the cytoscape REST API?
API R cytoscape REST ClueGO
updated 3.9 years ago by ▴ 310 • written 3.9 years ago by ▴ 30
3
votes
3
replies
1.8k
views
GWASpower calculation
GWASpower post-hoc
updated 2.3 years ago by 45k • written 3.9 years ago by ▴ 40
0
votes
2
replies
5.3k
views
How to calculate the AUC value for a ranger RF model ?
AUC value ranger randomForest classification
updated 3.9 years ago by • 0 • written 8.0 years ago by ▴ 270
0
votes
0
replies
526
views
how to perform independent test by R ranger() function
function ranger R
3.9 years ago by dao • 0
0
votes
2
replies
1.5k
views
Why does Cutadapt output much larger files than I am inputting?
Cutadapt Galaxy
updated 3.9 years ago by 152k • written 3.9 years ago by • 0
5
votes
9
replies
6.3k
views
Which counts to use for RNA-seq heatmap and PCA?
RNA-seq heatmap EdgeR PCA
updated 3.9 years ago by 88k • written 5.6 years ago by ▴ 170
0
votes
0
replies
875
views
pipeline/software/script to connect (whatshap) VCF phase blocks with Hi-C reads
whatshap phasing pipeline Hi-C
3.9 years ago by mvk ▴ 10
0
votes
1
reply
1.1k
views
R cannot delete tmp file
R
updated 3.9 years ago by • 0 • written 4.8 years ago by ▴ 50
1
vote
3
replies
2.9k
views
HiC data - How to know the restriction enzymes that were used for generating HiC datasets
restriction_enzyme HiC
3.9 years ago by nkmalini97 • 0
2
votes
2
replies
1.2k
views
RNA STAR tool in GALAXY?
galaxy
updated 3.9 years ago by 152k • written 3.9 years ago by • 0
0
votes
1
reply
1.3k
views
How does MetaProdigal handle metagenomics where different genetic codes are used?
metagenomics metatranscriptomics binning
updated 3.9 years ago by ▴ 540 • written 4.0 years ago by ▴ 750
0
votes
0
replies
770
views
Having issue running TransposonPSI
Repeatmasker TransposonPSI
3.9 years ago by tshittu • 0
0
votes
0
replies
770
views
Transcriptome Analysis Console (TAC) VS Oligo package in bioconductor
Oligo microarray TranscriptomeAnalysisConsole bioconductor
3.9 years ago by YCW121 • 0
0
votes
1
reply
953
views
Can KING relatedness software be set to ignore FID?
Relationship software inference KING Relatedness IBD
updated 3.9 years ago by ★ 4.8k • written 3.9 years ago by • 0
1
vote
1
reply
1.1k
views
A regex to convert operon names to genes?
regex r gene operon
updated 3.9 years ago by ★ 2.9k • written 3.9 years ago by ▴ 750
0
votes
0
replies
807
views
Batch conversion of InterPro IDs to GO IDS for TopGO analysis
InterPro analysis Enrichment TopGO ID GO
3.9 years ago by drowl1 ▴ 50
121,618 results • Page 581 of 2433
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[Deprecated] Fast download of FASTQ files from the European Nucleotide Archive (ENA)
RNA-seq low quality sample in downstream analysis
RNA-seq low quality sample in downstream analysis
Comment: RNA-seq low quality sample in downstream analysis
Comment: RNA-seq low quality sample in downstream analysis
Answer: Fixing MGI Sequence Headers - FASTQ Format
Fixing MGI Sequence Headers - FASTQ Format
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Hi all, Thank you for the helpful suggestions. In my dataset, I observed a significant effect of Sex, so I subset the data to include only…
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Hey @severalorks, Were you able to figure it out? I'm curious how you built the consensus sequences and aligned them to human proteins. I n…
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Hey @Julia92796, Were you able to figure it out? I'm curious how you built the consensus sequences and aligned them to human proteins. I no…
Comment: STAR alignment to small fasta file failing by GenoMax 152k
What is the length of fasta reference sequences?
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What kind of sequencer is this data from?
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> but it seems that i cannot directly use these BAM files in STAR. You most definitely can.
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You cannot use STAR to get isoform level counts, only gene level counts and you can do that using an input BAM. For transcript level counts…
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Another example![enter image description here][1] [1]: /media/images/9fea51dc-fd45-4fe6-b018-f3399786
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Excellent. Just to confirm sometimes I will have a peak like I had before but with some subtle secondary and tertiary peaks. These seem to …
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Answer: undefined chro name in vcf header by GenoMax 152k
See the explanation here: https://genome.ucsc.edu/FAQ/FAQdownloads#download10
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Please do not repost problems with a solution in separate threads. If you are having an issue continue in the same thread using the `ADD CO…
Answer: Fixing MGI Sequence Headers - FASTQ Format by GenoMax 152k
Give this a try: https://sagc-bioinformatics.github.io/mgikit/reformat
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