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121,913 results • Page
61 of 2439
Sort: Rank
Rank
Views
Votes
Replies
0
votes
1
reply
390
views
QIIME2 artifact in galaxy
help
updated 11 months ago by
GenoMax
153k • written 11 months ago by
mbyec18
• 0
3
votes
2
replies
681
views
RNA-seq heatmaps: effective length, RPKM vs. CPM
edgeR
RNA-seq
updated 11 months ago by
ATpoint
89k • written 11 months ago by
bioinfo2345
▴ 40
0
votes
4
replies
877
views
The definition of a gene
gene
lncrna
transcript
11 months ago by
zizigolu
★ 4.4k
4
votes
7
replies
1.0k
views
Extracting single chromosome from WGS cram/bam files before downloading
VNTR
1KG
HGDP
SGDP
WGS
updated 11 months ago by
Pierre Lindenbaum
166k • written 11 months ago by
berndmann
• 0
0
votes
0
replies
256
views
Performing sex-stratified analysis using regenie
regenie
updated 11 months ago by
Ram
45k • written 11 months ago by
derycine
• 0
2
votes
1
reply
534
views
variant calling through gatk
variant-calling
vcf
workflow
gatk
11 months ago by
ashaneev07
▴ 50
3
votes
2
replies
706
views
Downloading Raw Reads
reads
RNA
updated 11 months ago by
colindaven
7.9k • written 11 months ago by
Jamie
• 0
1
vote
1
reply
442
views
Good Dotplots for homogenous data (Seurat)
seurat
dotplot
updated 11 months ago by
yura.grabovska
▴ 820 • written 11 months ago by
carolofharvest
▴ 50
1
vote
1
reply
773
views
1000 genome dataset download
ADMIXTURE
1000genome
iAdmix
fastNGSadmix
plink
updated 11 months ago by
chrchang523
11k • written 11 months ago by
Soohyun
• 0
0
votes
2
replies
702
views
Immunedeconv CIBERSORT
p-value
Immunedeconv
CIBERSORT
11 months ago by
dy001
• 0
3
votes
7
replies
1.9k
views
errors in installing picard
picard
11 months ago by
Meghan.T
▴ 10
1
vote
5
replies
1.1k
views
Bulk RNA seq PCA plot issues
RNA-seq
PCA
9 months ago by
karlensberg
• 0
0
votes
0
replies
430
views
News:
Upcoming November Courses – Enhance Your Skills in Bioinformatics and Data Analysis
Population-Genomics
scRNA-seq
RNA-seq
Metagenomics
Genome-Assembly
11 months ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
304
views
SVA with intercept only
SVA
batch-correction
updated 11 months ago by
Ram
45k • written 11 months ago by
IM
• 0
4
votes
2
replies
749
views
Problem in calling peak by MACS3
MACS3
updated 11 months ago by
ATpoint
89k • written 11 months ago by
daffodil
▴ 10
0
votes
1
reply
1.5k
views
Using TCGABioLinks to query multiple cancer studies
RNA-Seq
R
TCGA
updated 11 months ago by
GenoMax
153k • written 4.7 years ago by
ivykosater
• 0
0
votes
1
reply
852
views
News:
Online Workshop - Bioinformatics Pipeline Development with Nextflow (November 13-15, 2024)
Workshop
Nextflow
RNA-Seq
11 months ago by
ecSeq Bioinformatics
▴ 20
0
votes
1
reply
475
views
Merging BAM files after alignment or restarting the workflow?
BAM
alignment
updated 11 months ago by
GenoMax
153k • written 11 months ago by
stanmih2
• 0
1
vote
1
reply
434
views
Raw reads or raw counts for meta-analysis
meta-analysis
rna-seq
HTSEQ
STAR
updated 11 months ago by
Ram
45k • written 11 months ago by
a.stef.44
▴ 10
2
votes
7
replies
1.5k
views
Can someone explain to me in relatively simple language how PCR primer, reverse primer, and probe sequences are generated?
reverse
probe
pcr
primer
11 months ago by
Ryan
• 0
4
votes
12
replies
3.4k
views
Tool:
fastplong: ultrafast preprocessing and quality control for long reads
long-reads
updated 9 months ago by
lieven.sterck
15k • written 11 months ago by
chen
★ 2.5k
2
votes
8
replies
1.7k
views
GEOquery issue
database
GEO
GEOquery
11 months ago by
Jaber
▴ 30
0
votes
0
replies
437
views
Need help with providing RNA Seq data to run braker.pl in ETP mode.
augustus
gene-prediction
rna-seq
braker
genemark
11 months ago by
Vijith
▴ 100
0
votes
2
replies
574
views
Can the CFD commercial code simulate multicellular flow in a tall cavity using the second-order scheme?
multicellular-flow
updated 11 months ago by
GenoMax
153k • written 11 months ago by
uthai
• 0
0
votes
1
reply
457
views
How to filter a reference genome for single copy genes?
busco
genes
single
copy
genome
updated 11 months ago by
Pierre Lindenbaum
166k • written 11 months ago by
Armin
▴ 10
1
vote
0
replies
859
views
Job:
Full Time Bioinformatics Analyst: University of Connecticut: Computational Biology Core
bioinformatician
11 months ago by
Jlw
▴ 200
0
votes
0
replies
274
views
How to obtain level 2 GO term from go_id?
R
GO-term
11 months ago by
Chenfeng
• 0
3
votes
0
replies
436
views
Blog:
How Seurat PCA projection, KNN and MNN for label transfer work
R
RNA-seq
scRNA-seq
PCA
updated 11 months ago by
Ram
45k • written 11 months ago by
Ming Tommy Tang
★ 4.7k
0
votes
0
replies
416
views
News:
RNAseq in non-model organisms (online course)
Bioconductor
Pacbio
RNAseq
11 months ago by
Physalia-courses
★ 2.6k
1
vote
3
replies
633
views
WGS sequence composition bias at read start
WGS
updated 11 months ago by
GenoMax
153k • written 11 months ago by
Mega
• 0
0
votes
2
replies
755
views
Does BWA-MEM 2 account for overlapping reads within the paired end data?
mapping
calling
variant
reads
11 months ago by
ayeraselvan
▴ 10
0
votes
0
replies
413
views
Forward strand alignment
QC
GWAS
strand
alignment
11 months ago by
JJ
• 0
5
votes
2
replies
789
views
Is there an easy way to scrape a whole bunch of NCBI RefSeq FASTA from NCBI?
FASTA
Genome
NCBI
updated 11 months ago by
shenwei356
8.7k • written 11 months ago by
Mark
▴ 60
0
votes
0
replies
480
views
Trouble with CGenFF and Ligand Topology in GROMACS
CGneFF
Protein-ligand
Gromacs
MD
simulation
11 months ago by
Mostafa
• 0
0
votes
3
replies
1.2k
views
GTF merging with gffcompare
gtf
merging
annotation
RNA-Long
reads
transcript
updated 11 months ago by
Carlo Yague
9.0k • written 11 months ago by
Mai.Nabil
• 0
0
votes
2
replies
766
views
How methylation is annotated, and what is the number behind the cg.... annotation
Methylation
annotation
11 months ago by
Peter
• 0
0
votes
1
reply
477
views
Rnbeads
Rnbeads
methylation
DNA
R
updated 11 months ago by
Ram
45k • written 11 months ago by
AJ
• 0
0
votes
5
replies
1.3k
views
Overlapping reads, how do we counter them while variant calling, haplotype calling, does it affect mapping?
reads
updated 11 months ago by
Jeremy Leipzig
23k • written 11 months ago by
ayeraselvan
▴ 10
1
vote
1
reply
780
views
(Nextflow) Having trouble with a generic process to stitch together files that were split and then processed
nextflow
updated 11 months ago by
Pierre Lindenbaum
166k • written 11 months ago by
sodiumnitrate
▴ 20
3
votes
5
replies
1.2k
views
Gene set enrichment analysis gives a lot of "significant pathways"
KEGG
GESA
Hallmarks
11 months ago by
Nona
▴ 90
4
votes
2
replies
654
views
How can I check if a variant affects a TFBS?
variant
TFBS
11 months ago by
Tania
▴ 180
0
votes
0
replies
294
views
How to estimate haplotype number from pooled dna sequences from blood samples
sequences
Haplotype
pooled
11 months ago by
Arline
• 0
0
votes
0
replies
259
views
Deduplication when performing copy number analysis
CNV
copy-number
updated 11 months ago by
Ram
45k • written 11 months ago by
Kenji YT
• 0
0
votes
2
replies
636
views
intersection of vcf files with bcf isec - no header
isec
bcftools
vcf
11 months ago by
jasminestaples1
• 0
2
votes
2
replies
743
views
Cell cluster that mainly consists of doublet.
Doublet
scRNA-seq
updated 11 months ago by
jared.andrews07
★ 19k • written 11 months ago by
D
• 0
0
votes
0
replies
397
views
Struggling with Meme-suite, looking for troubleshooting tips
ATAC-seq
Meme
Motifs
11 months ago by
Ronin
▴ 10
0
votes
1
reply
456
views
phyloseq Analysis using R
Phyloseq
updated 11 months ago by
dthorbur
★ 3.1k • written 11 months ago by
makujabi
• 0
0
votes
1
reply
841
views
Subsetting post integration in seurat V5
integration
seuratV5
updated 11 months ago by
kaelin
• 0 • written 11 months ago by
nina.goldman.21
• 0
0
votes
5
replies
995
views
weird entry in EnhanceVolcano Volcano plot -RNAseq
DEseq2
RNAseq
EnhancedVolcano
updated 11 months ago by
Ram
45k • written 11 months ago by
Yogesh
• 0
2
votes
5
replies
2.1k
views
SNPs of a specific mouse strain
snp
updated 11 months ago by
ayayron117
▴ 10 • written 22 months ago by
darklings
▴ 580
121,913 results • Page
61 of 2439
Recent Votes
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Comment: Different UMAP for batch correction in R and Pytho
Getting VCF file for the 1000 genome project with rsid
Answer: Different UMAP for batch correction in R and Pytho
Answer: Different UMAP for batch correction in R and Pytho
Answer: Different UMAP for batch correction in R and Pytho
A: How to extract reads with no INDEL?
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Comment: Concatenate multiple MUSCLE alignment result to build a phylogenetic tree
by
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▴ 190
Hi Mensur, sorry for this but I'm a little stuck. I’m trying to build a species tree for the first time and I would like to clarify a few …
Comment: Tried building a compact sequence format with 4-bit storage
by
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36k
In addition to looking at other tools as a baseline: https://en.wikipedia.org/wiki/Compression_of_genomic_sequencing_data maybe also look i…
Comment: Different UMAP for batch correction in R and Pytho
by
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▴ 20
Thanks, António for a helpful, detailed response. I didn't take into consideration that the plotting order of cells from each batch can be …
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by
saruman
• 0
It seems that using the following format fixes the problem: --read-group "1 SM:HG002 LB:lib1 PL:illumina PU:unit1" As shown below: …
Comment: Developing a genomics ML model using bytes?
by
dariober
15k
> what if we can use the bytes to develop a model? My understanding is that the OP is considering building a model using the sequences in …
Comment: WGCNA package in R: dendogram plot error
by
RJ
• 0
You might had delete the outliers from the expression table but then the traits data.frame doesn't match with expression table dimensions.
Comment: miRNA low mapping ratings
by
Ant
▴ 50
No, it's a personal dataset. I haven’t seen the link, but if I understand correctly, it's not possible to use the software for free, right?
Comment: miRNA low mapping ratings
by
GenoMax
153k
So this is a public dataset? QIAseq miRNA libraries may require special handling. Have you seen --> https://resources.qiagenbioinformatics.…
Comment: Trouble when installing arb
by
GenoMax
153k
Are you referring to software found here --> http://download.arb-home.de/release/latest/ ? If so why are you installing the source. Authors…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
153k
All valid points. This is a SRA dataset. If it is covered by a publication hopefully it is not a bad one. @Pranav if you can post the SRA a…
Answer: Different UMAP for batch correction in R and Pytho
by
antonioggsousa
3.4k
Hi, I'm mostly an R user, but the codes you presented look correct to me. The two UMAP projections *"look too similar to be different"*, …
Answer: How to properly assemble phage genomes?
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Joe
22k
This might help: https://millardlab.org/lab-members/alumni/lucy-gannon/lucys-beginner-guide-to-bacteriophage-genome-assembly/
Comment: RNA-SEQ where only a subset of genes is of interest
by
piffelpaff
• 0
Thanks for your reply. Yes it's single-cell and we're talking about roughly 30 pre-selected genes. I see. I was rather referring to the d…
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22k
This may not be exactly what you're looking for (kind of the other way around, predicting synthetic clusters from genes rather than the pro…
Comment: Developing a genomics ML model using bytes?
by
ATpoint
89k
How is this different from https://www.biostars.org/p/9615062/
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