4.4 years ago by
bioinf.questions
•
0
0
votes
3
replies
1.2k
views
2
votes
1
reply
1.3k
views
0
votes
0
replies
1.0k
views
4.4 years ago by
fifty_fifty
▴
90
0
votes
1
reply
1.0k
views
updated 4.4 years ago by
dioscorea.bulbifera
▴
10
•
written 4.4 years ago by
Qamarul
•
0
0
votes
2
replies
1.4k
views
4.4 years ago by
putty
▴
40
2
votes
0
replies
1.0k
views
updated 4.4 years ago by
Ram
45k
•
written 4.4 years ago by
metagenomez
▴
20
0
votes
2
replies
1.2k
views
0
votes
2
replies
1.1k
views
4.4 years ago by
Chenfei Zheng
▴
60
2
votes
2
replies
1.2k
views
updated 4.4 years ago by
ATpoint
90k
•
written 4.4 years ago by
pixie@bioinfo
★
1.5k
1
vote
0
replies
1.9k
views
0
votes
2
replies
1.5k
views
2
votes
2
replies
2.0k
views
updated 4 months ago by
Ram
45k
•
written 4.4 years ago by
mike.rightmire
▴
20
0
votes
1
reply
1.4k
views
updated 4.4 years ago by
C.
•
0
•
written 5.5 years ago by
peris_baba
▴
20
0
votes
6
replies
5.5k
views
0
votes
3
replies
2.7k
views
0
votes
1
reply
1.9k
views
updated 2.7 years ago by
Ram
45k
•
written 4.4 years ago by
Pratibha kadam
•
0
0
votes
15
replies
4.9k
views
updated 4.0 years ago by
greekkey
▴
30
•
written 4.4 years ago by
smrutimayipanda
▴
20
0
votes
0
replies
1.1k
views
0
votes
0
replies
946
views
0
votes
0
replies
861
views
2
votes
1
reply
1.4k
views
updated 4.4 years ago by
Pierre Lindenbaum
166k
•
written 4.4 years ago by
gevikoj888
•
0
0
votes
2
replies
11k
views
updated 3.3 years ago by
Ram
45k
•
written 10.0 years ago by
bioinforesearchquestions
▴
370
1
vote
2
replies
3.4k
views
0
votes
0
replies
1.1k
views
4.4 years ago by
kacollier
▴
30
0
votes
0
replies
867
views
1
vote
2
replies
1.4k
views
0
votes
0
replies
888
views
0
votes
0
replies
2.0k
views
4.4 years ago by
Shicheng Guo
★
9.6k
5
votes
5
replies
2.8k
views
2.8 years ago by
v.berriosfarias
▴
140
0
votes
0
replies
658
views
5
votes
6
replies
3.3k
views
1
vote
4
replies
1.4k
views
updated 2.7 years ago by
Ram
45k
•
written 4.4 years ago by
ConfusedSheep
▴
10
3
votes
3
replies
2.1k
views
1
vote
1
reply
961
views
5
votes
4
replies
3.5k
views
4.4 years ago by
charlielonergan
▴
20
0
votes
3
replies
1.4k
views
updated 4.4 years ago by
andres.firrincieli
3.9k
•
written 4.4 years ago by
bioAddict
•
0
0
votes
0
replies
832
views
0
votes
0
replies
739
views
1
vote
0
replies
699
views
0
votes
0
replies
1.6k
views
1
vote
0
replies
2.2k
views
6
votes
6
replies
3.0k
views
4.1 years ago by
gubrins
▴
350
1
vote
3
replies
1.4k
views
3
votes
4
replies
2.0k
views
4.4 years ago by
raalsuwaidi
▴
110
2
votes
3
replies
1.6k
views
5
votes
3
replies
14k
views
updated 4.4 years ago by
Nai
▴
50
•
written 5.7 years ago by
Balatheskulter
•
0
0
votes
1
reply
956
views
4.4 years ago by
geneticatt
▴
140
1
vote
4
replies
1.7k
views
4.4 years ago by
quentin54520
▴
120
1
vote
3
replies
1.9k
views
updated 4.4 years ago by
Pierre Lindenbaum
166k
•
written 4.4 years ago by
aka
▴
10
Recent Votes
Recent Locations •
All
United States, 8 minutes ago
Austria/Vienna, 9 minutes ago
United States, 10 minutes ago
France, 10 minutes ago
Switzerland, 20 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 21 minutes ago
Norway, 23 minutes ago
Recent Awards •
All
Popular Question to
Lila M
★
1.3k
Popular Question to
colindaven
8.1k
Popular Question to
san96
▴
190
Popular Question to
RD
▴
30
Popular Question to
Wilber0x
▴
70
Recent Replies
Comment: ID unifiying across different datasets
by
zizigolu
★
4.4k
Thanks a lot to be helpful
I’m trying to build a complete `UniProtID` to `GeneSymbol` lookup table and I’m running into a wall. I’ve alrea…
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
thomas.heigl.ibk
▴
20
thanks for the quick reply.
i posted the screenshot.
gatk-internally, there is still the difference using -ERC or not, priot is getting …
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
thomas.heigl.ibk
▴
20
here the igv view. showing the histogram for all samples plus the reads for one:
![enter image description here][1]
and expanded view of …
Comment: low quality data or file name swapping -- cellranger arc errors when processing
by
Arup Ghosh
3.5k
Check the read lengths to make sure the files are correct.
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
Pierre Lindenbaum
166k
> Any suggestions or help you could share
please, show us an IGV screenshot of the position
GATK realign the reads locally, discards read…
Comment: Can i use orthofinder for small protein datasets and not full proteome?
by
alexandrakortsi
•
0
By sequence. Thank you for your response!
Comment: Why did the QV value decrease significantly after using YAHS for HiC scaffolding
by
xinguok794
▴
10
Thank you for your reply! Unfortunately, despite running YAHS with `--no-contig-ec`, the QV value of the resulting FASTA file did not impro…
Comment: Subsetting before QC in Spatial Transcriptomics
by
Kent
▴
30
Hi Kevin,
Thanks for the detailed explanation. Due to the characteristics of the datasets, we initially used very lenient quality control…
Comment: Midpoint rooting IQTREE newick file moves node support around
by
Luca Arbore
▴
10
Thank you very much Kevin, it worked!
Comment: ID unifiying across different datasets
by
GenoMax
154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets
by
DrSmad
▴
10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
Comment: ID unifiying across different datasets
by
zizigolu
★
4.4k
sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
Comment: snpEff: Unsupported structural variant types
by
shpak.max
▴
70
Unfortunately, while it ran without a problem initially, when I checked the run screen today, I saw the following error message (and unlike…
Comment: ID unifiying across different datasets
by
GenoMax
154k
You can use the [**ID mapping tool**][1] from UniProt site (third ID did not map from the list above):
From To
P68104 ENSG0000015…
Answer: The geo samples is not having sentrix id and sentrix position. But this informat
by
yura.grabovska
▴
890
Crosspost from related question: https://www.biostars.org/p/9616466/#9616534
```
##Using R, illuminaio from Bioconductor
library(…
Traffic: 4564 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6