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Please don't take my comment the wrong way.
Docking ligands is a serious endeavor that includes many preparatory steps, a use of highly so…
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Panos
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Thanks! I will try further downgrading snakemake (and python)..
Actually, I have already tried `hifiasm` which worked perfectly (as always…
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https://www.biostars.org/u/151541/ look through some of the top entries from this search for subread BAM's. Here is one example: https://do…
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I think `1ubq_Repair_1.pdb` is an intermediate file, and the other 3 files matter. But I use FoldX rarely, so you will have to verify this …
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That's great, @mensur. Thank you. I have a run that operates on 1ubq_Repair.pdb and produces a 'Dif_1ubq_Repair.fxout' now, even with numbe…
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Is there a reason you'd like to use IPA over, for instance, hifiasm? I'd recommend starting with hifiasm.
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This is very similar to your recent [post](https://www.biostars.org/p/9615406/) - if you aren't going to provide the protein example for a …
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1. When you said "the same dataset", are you sure about the files are the same, or you just mean the same list of patients? There are many …
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Try: https://www.google.com/search?q=site:https://downloads.pacbcloud.com/public/dataset/+%22subreads%22
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If they are not available at PacBio site then your chances of getting them are going to be significantly reduced. Only other source may be …
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Yes, I did check. They don't have any.
Comment: downloading raw bam files from pacbio sequencer
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I want to download the HDF5 .bax.h5 files or BAM/SAM .subreads.[bs]am files which out from the pacbio sequencer. Are there any sample demo …
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> Installation paths not writeable, unable to update packages
Are you a normal user on a system administered by other admins?
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Hi https://www.biostars.org/u/151679/
welcome to the forum.
Quite an extensive post but I can't seem to find a real question?
Please don…
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That's actually a huge help, thank you so much!
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