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121,904 results • Page 637 of 2439
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Job: BIG DATA MANAGER AND BACK-END DEVELOPER (M/W)
DATA
updated 4.3 years ago by 45k • written 4.3 years ago by • 0
0
votes
0
replies
722
views
How to generate a file where we get the list of common Genes expressed in each combination in a venn diagram
venndiagram R DEG
4.3 years ago by aka ▴ 10
2
votes
3
replies
1.3k
views
What is the minimum read lenght to filter in modern samples?
minimum lenght DNA modern read
updated 4.3 years ago by 153k • written 4.3 years ago by • 0
0
votes
3
replies
1.3k
views
Identifying samples from COSMIC/cBioportal etc with only a specific driver mutation
cancer genomics
updated 4.2 years ago by 45k • written 4.3 years ago by • 0
0
votes
3
replies
1.5k
views
How to rename the fasta header in a multifasta file
fasta seqkit
updated 4.3 years ago by 21k • written 4.3 years ago by ▴ 80
0
votes
0
replies
932
views
Job: Junior Chemical Engineer with Techno-Economic Assessment Skills at DTU Biosustain
AspenPlus chemical engineering SuperPro biosustain DTU
4.3 years ago by info ▴ 80
0
votes
1
reply
993
views
genome build for --extract bed1 file in PLINK
build bed plink genome
updated 4.3 years ago by 11k • written 4.3 years ago by • 0
0
votes
0
replies
664
views
Would someone know why unappropriate "genomeSAindexNbases" value causes Segmentation Fault?
Indexing STAR
4.3 years ago by maxdlf12 • 0
1
vote
3
replies
2.1k
views
Custom genome installation in SigProfileMatrixGenerator
genome custom SigProfilerMatrixGenerator
2.4 years ago by Ian 6.1k
1
vote
5
replies
1.4k
views
construction of a database of bacterial genomic and protein sequences
sql database mysql
updated 4.3 years ago by 45k • written 4.3 years ago by ▴ 20
1
vote
3
replies
1.9k
views
organism source of isolation and country source
sequence genome
updated 4.3 years ago by • 0 • written 9.4 years ago by • 0
3
votes
3
replies
2.9k
views
Remove prefix chrom:position before rsIDs
plink regex bim snp
updated 4.3 years ago by 9.0k • written 8.5 years ago by ▴ 30
10
votes
10
replies
3.9k
views
6 follow
How do I make a ComplexHeatmap from this dataframe?
scaling scale heatmap
4.3 years ago by Pratik ★ 1.1k
0
votes
3
replies
2.0k
views
Corrupted dbsnp-vcf?
BCFTOOLS VCF Imputation
4.3 years ago by Filago ▴ 110
0
votes
0
replies
2.0k
views
Class code selection ; GffCompare ; Novel transcript
codes GffCompare Class RNA-Seq StringTie
4.3 years ago by SKY ▴ 60
5
votes
2
replies
1.5k
views
Bedtools intersect, order of input bed files result in different outputs?
bedtools
updated 4.3 years ago by 12k • written 4.3 years ago by ▴ 100
1
vote
4
replies
1.4k
views
Incorrect Gene coordinates in GBFF File
Gene Coordinate GBFF
4.3 years ago by amar.kant20422 • 0
0
votes
1
reply
926
views
Tool to find first stop-codon in a given ORF
python codon ORF stop R
updated 4.3 years ago by 15k • written 4.3 years ago by • 0
1
vote
6
replies
6.1k
views
syntax error near unexpected token `('
script shell
updated 4.3 years ago by 45k • written 4.3 years ago by • 0
1
vote
1
reply
1.3k
views
extract only 5' information of BAM file
BAM
updated 4.3 years ago by 9.0k • written 4.3 years ago by ▴ 10
2
votes
2
replies
1.1k
views
Bacterial metatranscriptomics with DESEQ2?
metatranscriptomics RNA-SEQ
4.3 years ago by shail.nair05 ▴ 20
43
votes
19
replies
14k
views
9 follow
Basic Bam File Annotation
bedtools bam htseq annotation rseqc
4.3 years ago by Jeremy Leipzig 23k
0
votes
0
replies
999
views
high resolution deconvolution problem
cibersort deconvolution rna-seq
4.3 years ago by demoraesdiogo2017 ▴ 120
2
votes
2
replies
1.4k
views
Can I carrying out a WGCNA analysis with multiple traits?
WGCNA
4.3 years ago by Lalaland ▴ 40
4
votes
10
replies
3.3k
views
Sorting of a bam file takes toooo long time
linux bam
updated 2.5 years ago by 45k • written 4.3 years ago by ▴ 30
1
vote
2
replies
1.1k
views
BLASTP local vs website
blastp
4.3 years ago by timothy.kirkwood ▴ 140
0
votes
0
replies
1.6k
views
How to plot rarefaction curves in R using Vegan?
gene richness rarefaction R
4.3 years ago by anikcropscience ▴ 270
0
votes
1
reply
1.6k
views
Can BOLT-LMM_v2.3.2 handle BGEN v3 format data released by UK biobank?
UK Biobank BGEN BOLT-LMM gene genotype
updated 4.3 years ago by • 0 • written 6.2 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Forum: Basic beginner bioinformatics for biochemistry for university first year students
books course
updated 4.3 years ago by 12k • written 4.3 years ago by • 0
0
votes
5
replies
1.9k
views
Comparing two bai files
BAM BAI
updated 4.3 years ago by 15k • written 4.3 years ago by ▴ 90
0
votes
0
replies
718
views
How to print the best matching hit while making a BLAST search? / BioPython
biopython blast best_hit_overhang max_hpsp hit
4.3 years ago by sezer.sevin • 0
4
votes
3
replies
4.1k
views
How do I count the real total reads from a fastq file?
NGS Fastq End Paired Sequencing
updated 3.5 years ago by ▴ 110 • written 4.3 years ago by ▴ 10
1
vote
7
replies
2.4k
views
Basic annotation of refseq bacterial genomes
annotation bacteria
4.3 years ago by biobiu ▴ 150
2
votes
4
replies
1.9k
views
Subsampling reads
metagenome metagenomics microbial
4.3 years ago by amy ▴ 20
5
votes
4
replies
3.8k
views
Difference between Meta'omics and Multi'omics
Omics
updated 4.3 years ago by ▴ 180 • written 4.3 years ago by ▴ 250
0
votes
0
replies
871
views
trmap alternative for gffcompare?
GffCompare Novel-Transcripts StringTie RNA-Seq
4.3 years ago by SKY ▴ 60
1
vote
2
replies
2.1k
views
How to extract subset of protein structure (PDB format) file based on a subsequence of protein
protein pdb python r
updated 4.3 years ago by ▴ 390 • written 4.3 years ago by ▴ 380
4
votes
1
reply
3.1k
views
Does HaploView perform phasing?
HaploView Phasing PHASE fastPHASE Haplotypes
updated 4.3 years ago by ▴ 20 • written 8.5 years ago by ▴ 150
0
votes
0
replies
925
views
Novel transcript class code GffCompare?
Novel-Transcripts GffCompare RNA-Seq
4.3 years ago by SKY ▴ 60
1
vote
2
replies
3.2k
views
Spatial transcriptomics data
seurat scanpy no-visium .h5 spatial
4.3 years ago by lsudupe ▴ 20
4
votes
4
replies
7.1k
views
Installing samtools version 1.12
samtools
updated 4.3 years ago by 105k • written 4.3 years ago by ▴ 90
0
votes
0
replies
826
views
how to install non-condo dependency and add it to .yaml env file?
snakemake
4.3 years ago by AnnaS • 0
0
votes
0
replies
689
views
tRNA fragment
RNA-seq small
4.3 years ago by 972050141 • 0
0
votes
0
replies
636
views
Is there a simple script to identify plasmid Inc or Rep type given its DNA sequence?
inc rep plasmid
4.3 years ago by crisstyl ▴ 10
1
vote
1
reply
1.2k
views
Is there is a way to know that the sra data I'm interested in has a bad fastqc from sra database on ncbi before downloading it or before making fastq…
fastq fasta SRA
updated 2.5 years ago by 45k • written 4.3 years ago by ▴ 20
16
votes
1
reply
4.4k
views
Tutorial: PCR Primer or Primer+Probe design
pcr probe rt-pcr qpcr primer
updated 4.3 years ago by ★ 19k • written 4.3 years ago by 89k
1
vote
1
reply
1.2k
views
Lowly undergrad has trouble finding good primers for Professor!
intron primerblast primerdesign ncbi exon
updated 4.3 years ago by 89k • written 4.3 years ago by • 0
0
votes
0
replies
892
views
How to change various SNP identifiers into rsID in Plink.
Chromosome SNP position Plink rsid
4.3 years ago by geno89 ▴ 20
1
vote
1
reply
925
views
Normalize RiboTag samples to input before differential expression with DESeq2
RiboTag DESeq2 RNA-Seq Differential Expression Analysis
updated 3.6 years ago by • 0 • written 4.3 years ago by ▴ 10
0
votes
3
replies
1.9k
views
Unable to extract country name from genbank file
Genbank data extraction
updated 4.3 years ago by ★ 3.9k • written 4.3 years ago by • 0
121,904 results • Page 637 of 2439
Recent Votes
Answer: Tried building a compact sequence format with 4-bit storage
Tried building a compact sequence format with 4-bit storage
Shift in RNA 3' position, Term-Seq vs RNASeq
Comment: STARlong for pacbio Isoseq reads
Comment: Automatically annotating a feature using a genbank file
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
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Recent Replies
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Gordon Smyth ★ 8.3k
RNA-seq is very good at relative analyes. It would be straightforward to determine which miRNAs are relatively more abundant, compared to o…
Comment: Tried building a compact sequence format with 4-bit storage by Pranava ▴ 10
Woah!!! Thank you very much, Matthias. I honestly didn't even know some of those existed and I will definitely go through them and try to u…
Answer: Tried building a compact sequence format with 4-bit storage by Matthias Zepper 5.1k
Hello Pranava, Thanks for sharing your repository. Devising a new file format is an interesting undertaking and certainly a task with many…
Answer: Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio) by GenoMax 153k
`LOC` gene ID's are often assigned to uncharacterized genes and you may not get useful information from databases for them, thus they will …
Comment: Whole Genome Sequencing IG regions by GenoMax 153k
> are the calls I am seeing reliable or should I take them with something of a pinch of salt? Not sure what calls you are referring to but…
Comment: RNA-SEQ where only a subset of genes is of interest by piffelpaff • 0
Sorry to revive this ancient thread but I'm currently discussing the same question with some people in my lab and would love to somebody po…
Answer: STARlong for pacbio Isoseq reads by YuZJ • 0
Hello, you may try deSALT (DOI: 10.1186/s13059-019-1895-9, GitHub: ydLiu-HIT/deSALT) or uLTRA (DOI: 10.1093/bioinformatics/btab540, GitHub:…
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq by acvill ▴ 350
Without knowing the details of the Term-seq method, could the 38 nt shift be accounted for by the difference in the position of the ribosom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
Thanks, I'll give it a try.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
You could give `mapPacBio.sh` from BBMap suite a try while you wait for other answers. That works for reads up to 6 kb. BBMap has a new hom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
The average is 1.8kb. I was planning to post it on GitHub, but it seems like the repository has been unattended for the last months, so I d…
Comment: Getting just fastqc.zip file? by GenoMax 153k
Yes, You can either use it on command line or use the graphical user interface.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
What is the average length of your reads? That error sounds like a bug, so you may want to post that on `STAR` repo as an issue. I assume …
Comment: Getting just fastqc.zip file? by pourhangleila95 • 0
I want to perform fastQC on my data.Do you use fastQC software for doing it?
Comment: Whole Genome Sequencing IG regions by 719 • 0
Sorry for the poor wording of the original post, also should say I really appreciate people taking a moment to look at my post. My main con…
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