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121,919 results • Page 71 of 2439
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414
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Recommended Tool for Somatic SV Discovery in Tumor-Only WES Data
SV WES tumor-only
12 months ago by George ▴ 20
0
votes
3
replies
1.1k
views
Bcftools error: Reference allele does not match the reference
bcftools liftover
updated 12 months ago by 166k • written 12 months ago by • 0
0
votes
0
replies
481
views
Fusion analysis with UMI deduplication
UMI Fusion deduplication Star
12 months ago by Xira_D • 0
5
votes
2
replies
928
views
Limma covariates treatment is changing my significance results
limma differential-expression
12 months ago by ijarne ▴ 20
0
votes
0
replies
427
views
imputation A1, A2
A1 imputation A2 GWAS
12 months ago by SeoG ▴ 10
3
votes
2
replies
1.4k
views
Forum: A guide for beginners in bioinformatics
sequencing ngs
updated 12 months ago by 45k • written 12 months ago by • 0
3
votes
5
replies
1.6k
views
bcftools stats not counting samples
bcftools Variant-Calling
updated 12 months ago by 166k • written 12 months ago by • 0
13
votes
24
replies
19k
views
12 follow
Tutorial: Associating VDJ clonotyping data with scRNA-seq in Seurat
single-cell RNA-Seq seurat TCR
updated 5 months ago by ▴ 50 • written 6.3 years ago by ★ 19k
18
votes
8
replies
20k
views
6 follow
Tutorial: Integrating VDJ sequencing data with Seurat
VDJ Seurat sc-RNAseq clonotyping
updated 12 months ago by 153k • written 6.3 years ago by ▴ 330
0
votes
2
replies
1.1k
views
WGCNA: Problem with selecting soft threshold below R^2 0.8
R network WGCNA
updated 12 months ago by 5.1k • written 12 months ago by • 0
0
votes
0
replies
585
views
CellTypist Confidence Scores vs SingleR Delta Scores
single-cell singleR celltypeannotation celltypist
12 months ago by Manuel Sokolov Ravasqueira ▴ 110
0
votes
3
replies
1.3k
views
How to Perform Differential Expression Analysis Between Two Species' Transcriptomes?
transcriptomics differential-expression genomics
updated 12 months ago by 56k • written 12 months ago by • 0
0
votes
0
replies
547
views
News: Course: Introduction to CRISPR
GenomeEditing CRISPR Evolution
12 months ago by Physalia-courses ★ 2.6k
2
votes
1
reply
809
views
EnhancerAtlas
enhancer hic
updated 12 months ago by 5.1k • written 12 months ago by • 0
0
votes
1
reply
623
views
Error in simulation interaction diagram module of Desmond
simulation MD
12 months ago by 20212854117sakib • 0
3
votes
8
replies
2.2k
views
Kallisto: to scaledTPM or not to scaledTPM
tximport kallisto EdgeR RNAseq
updated 12 months ago by ★ 8.3k • written 12 months ago by • 0
0
votes
2
replies
1.2k
views
How to find potential batch effect for microarray samples?
Gene-expression Batch-effect Microarray
12 months ago by namck • 0
0
votes
4
replies
1.3k
views
CpG coordinates information
Methylation Human-Genome CpG-sites
12 months ago by elias01cj • 0
0
votes
0
replies
499
views
Comparative proteomics using online mass spec data
Mass-spectrometry proteomics
updated 12 months ago by 45k • written 12 months ago by ▴ 20
0
votes
2
replies
872
views
Biostar Handbook issue with doctor.py
doctor.py biostar-handbook
updated 12 months ago by 45k • written 12 months ago by • 0
3
votes
6
replies
1.8k
views
Is it necessary to give a "limit" SPARQL Disgenet query search?
DisGeNET RDF SPARQL
updated 12 months ago by 153k • written 22 months ago by • 0
0
votes
0
replies
436
views
Galaxy docker build
docker galaxy
updated 12 months ago by 45k • written 12 months ago by ▴ 10
0
votes
1
reply
823
views
Different insertion times from two methods
pacBio mtDNA NUMTS
updated 12 months ago by 45k • written 12 months ago by ▴ 40
0
votes
6
replies
1.4k
views
installing ArchR on a mac
R ArchR
11 months ago by Assa Yeroslaviz ★ 1.9k
1
vote
3
replies
1.5k
views
python package for Kendall-Colijn distances between phylogenetic trees
biology genealogy evolution
updated 12 months ago by ▴ 10 • written 3.9 years ago by • 0
0
votes
0
replies
451
views
LFQ values from MS counts
MS LFQ proteomics mass-spectrometry
updated 12 months ago by 45k • written 12 months ago by ▴ 30
3
votes
2
replies
988
views
BCFTOOLS VIEW parameter?
SNP
updated 12 months ago by 166k • written 12 months ago by • 0
3
votes
6
replies
1.5k
views
Why do a bacterium need CRISPR system?
CRISPR Genetics
12 months ago by Farhat • 0
1
vote
2
replies
1.1k
views
renv does not activate the environment
environment renv
12 months ago by Parham ★ 1.6k
3
votes
2
replies
1.5k
views
Get PDB files from UniProt IDs
protein-structure UniProt PDB proteins
updated 12 months ago by ★ 2.1k • written 12 months ago by • 0
0
votes
7
replies
1.7k
views
Chromium 5’ Next GEM single cell STARsolo
10x STAR scRNA-seq
updated 12 months ago by ★ 7.7k • written 12 months ago by • 0
13
votes
9
replies
9.8k
views
6 follow
Tutorial: STARsolo config for 10x Chromium v1, v2, v3
Chromium 10x STARsolo STAR
updated 12 months ago by 153k • written 5.0 years ago by 89k
6
votes
4
replies
48k
views
7 follow
How to convert a URL into a DOI programmatically
pubmed doi url
updated 12 months ago by • 0 • written 9.0 years ago by ▴ 100
0
votes
1
reply
666
views
Identifying statistically significant clusters between two populations of variable sizes
immune-response flow-cytometry
updated 12 months ago by 5.1k • written 12 months ago by • 0
0
votes
0
replies
548
views
News: Metabolomics with R/Bioconductor Online Course
Metabolomics Bioconductor R
updated 12 months ago by 45k • written 12 months ago by ★ 2.6k
4
votes
4
replies
1.1k
views
Biostatistics with few samples in seqRNA counts
biostatistics
updated 12 months ago by 15k • written 12 months ago by ▴ 10
2
votes
4
replies
1.1k
views
Multiple SRR files correspond to the same GSM in GEO
fastq geo
12 months ago by SHIRUI ▴ 10
1
vote
3
replies
1.1k
views
How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-Seq Data? Post:
RNA-Seq
updated 12 months ago by 22k • written 12 months ago by ▴ 10
4
votes
6
replies
2.3k
views
Snakemake and conda directory structure
management workflow snakemake conda
updated 12 months ago by 56k • written 12 months ago by ▴ 170
0
votes
0
replies
395
views
Molecule toxicity prediction
molecule-toxicity off-target
updated 12 months ago by 45k • written 12 months ago by • 0
0
votes
2
replies
771
views
SNPs profile on chromosome 1 curve
profile SNPs
updated 12 months ago by 20k • written 12 months ago by ▴ 10
0
votes
2
replies
986
views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
bioconductor Rpackage clusterprofiler
12 months ago by iamsmor • 0
6
votes
8
replies
3.3k
views
How To Transform A Location-Type Coordinate Into Integer Or String?
biopython
updated 12 months ago by ▴ 10 • written 13.6 years ago by ▴ 40
0
votes
2
replies
744
views
Can we treat outliers as batch variables in linear modeling?
R modeling Outlier linear
12 months ago by aUser ▴ 80
5
votes
7
replies
2.2k
views
Differential expressed genes - much more DE genes for one factor in the additive model than the interaction model . What may be the reason?
DESeq2
12 months ago by Pei ▴ 240
0
votes
2
replies
668
views
host-specific pathogens taxonomy IDs
taxonomy taxon NCBI host-specific-pathogens
updated 12 months ago by 45k • written 12 months ago by • 0
0
votes
1
reply
784
views
GenBank submission through BankIt
chloroplast genome FeatureFile GenBank BankIt
12 months ago by a.bibek52 ▴ 10
0
votes
0
replies
575
views
News: Cellosaurus release 50 is available
database knowledgebase cell-line
updated 12 months ago by 45k • written 12 months ago by ▴ 140
6
votes
7
replies
2.1k
views
Trying to understand basic DiffBind usage
DiffBind ChIP-seq
12 months ago by alejandrocastillaibeas ▴ 20
0
votes
1
reply
536
views
How to draw a Manhattan diagram based on the gene names?
gwas manhattan-plot r
updated 12 months ago by 45k • written 12 months ago by • 0
121,919 results • Page 71 of 2439
Recent Votes
A: read.table does not read in all rows!
A: read.table does not read in all rows!
A: Binning Over Genes And Calculating The Coverage [Bedops/Bedmap]
Answer: [vg giraffe] Unable to add read group to BAM file
Comment: [vg giraffe] Unable to add read group to BAM file
Answer: [vg giraffe] Unable to add read group to BAM file
Answer: vcf multisample
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Recent Replies
Comment: miRNA low mapping ratings by Ant ▴ 50
The first one it's the results from Cutadapter and the second block from miRDeep2.
Comment: miRNA low mapping ratings by Ant ▴ 50
Thanks for the reply, when running: cutadapt -a AACTGTAGGCACCATCAAT -M 30 -o example_trimmed.fastq.gz data/xxx.fastq.gz, the sequence le…
Comment: Help with species tree with orthofinder, iqtree and branch labeling by GenoMax 153k
> I don’t have clear species labels in my headers, only sequence IDs. I have not used iqtree, so this is only a thought ... should it be y…
Comment: Help with species tree with orthofinder, iqtree and branch labeling by san96 ▴ 190
Thank you so much.
Comment: [vg giraffe] Unable to add read group to BAM file by saruman ▴ 10
Yes, it seems so. Thank you.
Comment: cellranger mkref fail/error by GenoMax 153k
> The thing is that I do not have a genome for these organisms. That is not what `cellranger mkref` is expecting. You could consider alt…
Comment: cellranger mkref fail/error by tatsispolychronis • 0
The thing is that I do not have a genome for these organisms. i made a transcriptome using TRinity and this is what I am feeding it. I do n…
Comment: Genome Assembly QC from BAM files by SomeOne ▴ 240
Hi, I am not sure if i can call them good assemblies. Although based on QUAST and BUSCO stats, everything looks too good but somehow i hav…
Comment: cellranger mkref fail/error by GenoMax 153k
You need to provide the genome reference for the `--fasta` option as noted in https://www.10xgenomics.com/support/software/cell-ranger/late…
Answer: Methods to analyse structural similarity: co-evolution vs convergence by Joe 22k
Without historical data (ancient DNA) there's no way to ever really know this for certain. The best we can do is make inferences based on t…
Answer: vcf multisample by Pierre Lindenbaum 166k
eg : https://ega-archive.org/datasets/EGAD50000001683 > Merged VCF file from sporadic Meniere disease cohort (found using https://dat…
Comment: Genome Assembly QC from BAM files by GenoMax 153k
Since this saga has been on going for a long time, it will be helpful to add a comment as to how you finally got to this point of what seem…
Comment: Methods to analyse structural similarity: co-evolution vs convergence by dthorbur ★ 3.1k
A few comments. 1. Coevolution of a trait between 2 organisms can end up with a convergent structure with another organism. It's not e…
Comment: Genome Assembly QC from BAM files by SomeOne ▴ 240
Thank you. Based on the description these two look really what i wanted to see.
Comment: miRNA low mapping ratings by i.sudbery 22k
Also, can you just clarify that the output above is from cutadapt or form miRDeep2?
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