1 hour ago by
Physalia-courses
★
2.6k
0
votes
0
replies
19
views
0
votes
2
replies
106
views
0
votes
2
replies
69
views
updated 50 minutes ago by
QX
▴
70
•
written 5 hours ago by
ChumBucket2024
•
0
0
votes
1
reply
65
views
updated 1 hour ago by
ATpoint
88k
•
written 6 hours ago by
jianhua.mert
•
0
840
votes
170
replies
180k
views
112 follow
updated 7 weeks ago by
Biostar
3.6k
•
written 8.5 years ago by
Istvan Albert
102k
0
votes
2
replies
161
views
1
vote
1
reply
103
views
updated 10 hours ago by
GenoMax
151k
•
written 14 hours ago by
LayneSadler
▴
90
0
votes
4
replies
1.0k
views
updated 14 hours ago by
schowdhury8950
•
0
•
written 12 months ago by
g.anande
•
0
0
votes
1
reply
97
views
13
votes
12
replies
474
views
7 follow
17 hours ago by
AIMAR
▴
10
3
votes
1
reply
196
views
0
votes
1
reply
163
views
updated 17 hours ago by
Pierre Lindenbaum
166k
•
written 1 day ago by
qian
•
0
2
votes
6
replies
2.0k
views
8
votes
4
replies
1.4k
views
updated 2 days ago by
fileyfood
▴
20
•
written 4.1 years ago by
jamie.pike
▴
90
8
votes
12
replies
2.7k
views
3
votes
3
replies
1.4k
views
updated 2 days ago by
fileyfood
▴
20
•
written 2.6 years ago by
andre.arrudalima
▴
80
2
votes
5
replies
1.3k
views
updated 2 days ago by
fileyfood
▴
20
•
written 19 months ago by
andre.arrudalima
▴
80
5
votes
3
replies
1.3k
views
updated 2 days ago by
fileyfood
▴
20
•
written 4.2 years ago by
shwetamgr1
▴
20
40
votes
12
replies
12k
views
13 follow
updated 2 days ago by
fileyfood
▴
20
•
written 15.4 years ago by
Giovanni M Dall'Olio
28k
5
votes
2
replies
2.1k
views
2
votes
3
replies
1.7k
views
14
votes
7
replies
11k
views
1
vote
2
replies
1.1k
views
3
votes
3
replies
4.1k
views
updated 2 days ago by
fileyfood
▴
20
•
written 9.3 years ago by
sviatoslav.kendall
▴
980
1
vote
1
reply
207
views
2
votes
11
replies
586
views
0
votes
1
reply
229
views
updated 3 days ago by
Mensur Dlakic
★
29k
•
written 3 days ago by
benjamin.kellman
•
0
0
votes
4
replies
352
views
1 day ago by
am29
▴
60
0
votes
0
replies
187
views
3 days ago by
Physalia-courses
★
2.6k
3
votes
0
replies
220
views
4 days ago by
Ming Tommy Tang
★
4.6k
0
votes
1
reply
251
views
2
votes
1
reply
1.0k
views
2
votes
1
reply
289
views
updated 4 days ago by
GenoMax
151k
•
written 4 days ago by
rajdeepboral00
▴
70
1
vote
0
replies
229
views
5
votes
4
replies
444
views
updated 4 days ago by
colindaven
7.6k
•
written 5 days ago by
sarahmanderni
▴
130
6
votes
2
replies
1.5k
views
updated 4 days ago by
ashotmarg2004
▴
130
•
written 21 months ago by
a615ebfb
▴
50
0
votes
1
reply
265
views
0
votes
0
replies
227
views
0
votes
2
replies
344
views
0
votes
0
replies
231
views
0
votes
0
replies
240
views
0
votes
0
replies
247
views
5 days ago by
zsc25001
▴
10
1
vote
6
replies
446
views
0
votes
0
replies
258
views
5 days ago by
Titus
▴
910
4
votes
3
replies
428
views
4 days ago by
rajdeepboral00
▴
70
0
votes
0
replies
242
views
1
vote
7
replies
530
views
updated 4 days ago by
GenoMax
151k
•
written 5 days ago by
SpliceAndScript
•
0
1
vote
1
reply
314
views
updated 5 days ago by
GenoMax
151k
•
written 6 days ago by
Arup Ghosh
3.3k
0
votes
2
replies
375
views
5 days ago by
Peter
•
0
0
votes
0
replies
283
views
Recent Votes
Recent Locations •
All
Germany, just now
Bologna, 4 minutes ago
Frankrike, 4 minutes ago
France, 6 minutes ago
Australia, 7 minutes ago
Hong Kong, 10 minutes ago
Indonesia, 12 minutes ago
Recent Awards •
All
Popular Question to
mschmidt
▴
80
Popular Question to
Priya Saravanan
•
0
Popular Question to
LayneSadler
▴
90
Popular Question to
ramiro.barrantes
▴
60
Popular Question to
spg
•
0
Popular Question to
GA
•
0
Recent Replies
Comment: Best way to install R packages on an HPC?
by
QX
▴
70
I have no idea if they have some environment manager like `conda`. but I usually make a specific path for R packages for each project,
…
Comment: How do I generate a Manhattan plot like this?
by
ATpoint
88k
That could easily be done with ggplot2. Essentially, it comes down to
x = chr
y = -log10(p)
color = locus_type
label = th…
Comment: Best way to install R packages on an HPC?
by
ATpoint
88k
The `BiocManager::install` should not take that long, something is wrong, but lack of details stops from investigating this. The writable t…
Comment: Parameters for annotation with maker
by
Jiaxin
•
0
Hi san,
Have you got an answer? I would like to put a non-mask genome and a gff file of repetitions as you, will this option work well?
Comment: Status of maker annotation
by
Jiaxin
•
0
Hi Juke, I have the same question as you, have you got an answer?
Answer: Snakemake Module Error: string indices must be integers
by
andean
•
0
I've resolved this by passing the config file via
module haplo_call:
snakefile: "/home/ac.aleman/git/GATK_haplotype_module/work…
Comment: Snakemake Module Error: string indices must be integers
by
andean
•
0
My guess is that the config file of the parent snakefile is passed as a string to the module rather than a dictionary as usual. How could I…
Comment: Where to find expected copy number for a gene
by
GenoMax
151k
Based on the current gene annotation found in https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_48/gencode.v48.annotation.g…
Answer: ATAC seq: from peaks to differential analysis ??
by
rfran010
★
1.5k
I also recommend converting the peak to SAF file as QX shows, although I just count fragments centered on cut site. There's little differen…
Comment: CUT&RUN analysis pipeline
by
schowdhury8950
•
0
@rpolicastro Hi, could you please help me understand which type of control is most appropriate for peak calling in CUT&RUN using MACS2? Whi…
Comment: Cut&Run replicates handling
by
schowdhury8950
•
0
Hi there, were you able to find an effective approach for handling replicates in CUT&RUN data? Also, for peak calling, did you use IgG or i…
Answer: Unable to extract count matrices from multi-layered Seurat object
by
bgbs
•
0
Alright, I fixed the issue by joining the counts layers in all_combined. I saved it to a new seurat object. Hopefully this helps someone el…
Comment: usage of ChromHMM and Segway
by
Pierre Lindenbaum
166k
cross posted: https://stackoverflow.com/questions/79666471/usage-of-chromhmm-and-segway
Answer: Learning Nextflow
by
Juke34
9.2k
Here the nice ressources I have collected
* [Nextflow Training from Fundamentals to Advanced](https://training.nextflow.io/latest/) The o…
Traffic: 3639 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6