0
votes
0
replies
30
views
0
votes
0
replies
49
views
2
votes
3
replies
254
views
updated 8 hours ago by
Gordon Smyth
★
7.1k
•
written 1 day ago by
SHN
▴
40
4
votes
2
replies
144
views
11 hours ago by
lorena9132
▴
10
795
votes
167
replies
142k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
1
reply
128
views
updated 12 hours ago by
Mathew
▴
30
•
written 19 hours ago by
drajangirija
•
0
0
votes
0
replies
71
views
2
votes
3
replies
736
views
updated 17 hours ago by
vjanve
•
0
•
written 7 months ago by
mateomejias
•
0
0
votes
2
replies
157
views
0
votes
4
replies
242
views
updated 21 hours ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
Ruqaiya
•
0
0
votes
0
replies
72
views
0
votes
0
replies
73
views
0
votes
1
reply
117
views
1
vote
2
replies
1.0k
views
2 hours ago by
Zhenyu Zhang
★
1.2k
0
votes
1
reply
220
views
updated 1 day ago by
chrchang523
10k
•
written 5 days ago by
8armed
•
0
0
votes
5
replies
271
views
updated 1 day ago by
chrchang523
10k
•
written 1 day ago by
curious
▴
750
0
votes
0
replies
97
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
deepak180001
•
0
0
votes
1
reply
143
views
0
votes
1
reply
140
views
0
votes
1
reply
138
views
0
votes
6
replies
333
views
0
votes
1
reply
133
views
updated 1 day ago by
swbarnes2
14k
•
written 1 day ago by
kalavattam
▴
190
0
votes
1
reply
124
views
0
votes
0
replies
99
views
0
votes
0
replies
97
views
1 day ago by
Javier
•
0
0
votes
1
reply
185
views
updated 1 day ago by
Thanujay S
•
0
•
written 1 day ago by
yahn
•
0
0
votes
0
replies
93
views
0
votes
0
replies
97
views
2
votes
2
replies
162
views
updated 1 day ago by
GenoMax
142k
•
written 1 day ago by
ahmad.sajad4541
•
0
0
votes
0
replies
91
views
1 day ago by
marco.barr
▴
90
0
votes
0
replies
195
views
2
votes
2
replies
178
views
updated 14 hours ago by
Ram
43k
•
written 1 day ago by
carolofharvest
▴
30
9
votes
9
replies
512
views
updated 14 hours ago by
Ram
43k
•
written 5 days ago by
carolofharvest
▴
30
0
votes
2
replies
193
views
0
votes
0
replies
109
views
1
vote
1
reply
137
views
updated 14 hours ago by
Ram
43k
•
written 2 days ago by
adi.gershon1
•
0
3
votes
5
replies
230
views
0
votes
5
replies
294
views
6 follow
updated 2 days ago by
b.contreras.moreira
▴
180
•
written 2 days ago by
JH
•
0
1
vote
3
replies
244
views
0
votes
0
replies
107
views
2 days ago by
Amos Bairoch
▴
120
2
votes
3
replies
247
views
0
votes
0
replies
127
views
0
votes
2
replies
709
views
updated 2 days ago by
clairechung112
•
0
•
written 23 months ago by
amahdi779
•
0
1
vote
3
replies
232
views
updated 2 days ago by
Alex Reynolds
35k
•
written 2 days ago by
SJP
•
0
0
votes
0
replies
120
views
0
votes
1
reply
170
views
1
vote
3
replies
220
views
updated 2 days ago by
jared.andrews07
★
16k
•
written 2 days ago by
yvonneh
▴
10
3
votes
5
replies
287
views
3
votes
8
replies
6.5k
views
7 follow
updated 2 days ago by
Sd
•
0
•
written 5.1 years ago by
Nicolas Rosewick
11k
Recent Locations •
All
United Kingdom, just now
Belgium, 1 minute ago
Israel, 4 minutes ago
Iran, 16 minutes ago
Europe, 23 minutes ago
South Korea, 29 minutes ago
India, 34 minutes ago
Recent Awards •
All
Popular Question to
Yoosef
▴
60
Popular Question to
Zhenyu Zhang
★
1.2k
Popular Question to
psm
▴
130
Popular Question to
Medhat
9.7k
Autobiographer to
Mathew
▴
30
Commentator to
dsull
★
6.0k
Scholar to
BioinfGuru
★
1.7k
Recent Replies
Comment: The GDC Legacy Archive is retiring soon.
by
Zhenyu Zhang
★
1.2k
If you are talking about methylation idat files, they were all migrated from legacy to the data portal.
If you are talking about other pl…
Comment: How to access TCGA samples that were treated with a specific drug?
by
Zhenyu Zhang
★
1.2k
These TCGA samples were taken 10 ~ 20 years ago, and there is no way they have been treated by the modern immunotherapy.
Are you sure tha…
Comment: Design matrix Differential expression analysis
by
Gordon Smyth
★
7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1))
It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file
by
lorena9132
▴
10
Hi Mathew,
The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file
by
Mathew
▴
30
Hi,
I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data
by
Mathew
▴
30
Hi,
You asked three questions so I will attempt to help the best I can
**What should be the optimal GC score cutoff**
It sounds li…
Comment: Design matrix Differential expression analysis
by
SHN
▴
40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx
by
vjanve
•
0
I ran into same issue of "duplicated gene symbol(s)":
1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, :
22292 dup…
Comment: creating batch colum for batch correction
by
Expert
▴
10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction
by
ATpoint
82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Segmentation error while using a tool
by
Ruqaiya
•
0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool
by
Ruqaiya
•
0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool
by
Mensur Dlakic
★
27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool
by
Thanujay S
•
0
Hey @Ruqaiya!
Can you please give more details on why smalt is opted here?
According to what I can see, the tool has become obsolete! Why …
Traffic: 1378 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6