Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Post does not exist.
Limit : all time
all time
today
this week
this month
this year
116,967 results • Page
1 of 2340
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
7
views
Sam file Header problem
Sam
Header
problem
file
27 minutes ago by
saifulislam99121
• 0
0
votes
4
replies
128
views
Tool:
Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script
Minutes
Decimal
Degrees
python
Degree
offtopic
1 hour ago by
kuttibiotech2009
▴ 30
0
votes
1
reply
471
views
scRNAseq quality control weird double curve in nFeature vs nCount plot
scRNA-seq
QC
single
cell
BDRhapsody
analysis
updated 2 hours ago by
valdirbarth
▴ 20 • written 12 months ago by
Salomé
• 0
0
votes
0
replies
25
views
select set of intervals that cover a genomic region
GRanges
bed
2 hours ago by
ntsopoul
▴ 60
0
votes
0
replies
28
views
Tool:
Collect dispersed executable files and run them by using bingo.
bingo
2 hours ago by
dwpeng
• 0
0
votes
0
replies
30
views
BiomartException: Query ERROR for existing dataset in BioMart
biomart
ensembl
wheat
python
pybiomart
4 hours ago by
Luqman
• 0
797
votes
167
replies
143k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 3 months ago by
Biostar
2.8k • written 7.4 years ago by
Istvan Albert
100k
0
votes
1
reply
52
views
ggrepel function: geom_text_repel()
ggrepel
ggplo2
R
updated 2 hours ago by
ntsopoul
▴ 60 • written 4 hours ago by
sooni
▴ 20
0
votes
2
replies
58
views
how to treat the replicates while performing WGCNA
clustering
WGCNA
replicates
just now by
mavy
▴ 10
0
votes
1
reply
74
views
How to extract cells of different species after mapping with combined genome?
snrnaseq
scrnaseq
updated 5 hours ago by
GenoMax
142k • written 8 hours ago by
vk
▴ 10
1
vote
1
reply
157
views
Calculate allelic frequency from VEP output vcf file
VEP
variant
9 hours ago by
ramiro.barrantes
• 0
1
vote
1
reply
119
views
In one PCA plot, can I calculate the percentage of different factors that contribute to the PCA?
PCA
R
VARIANCE
updated 9 hours ago by
marco.barr
▴ 120 • written 14 hours ago by
diqixiaoyaoer
▴ 10
2
votes
6
replies
1.8k
views
How can you *consistently* download BioProject IDs from NCBI's BioSample database using Entrez Direct?
XML
ncbi
entrez-direct
updated 9 hours ago by
Ram
43k • written 3.9 years ago by
millere
• 0
0
votes
2
replies
226
views
DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts in whole blood: is it normal to always get NS?
rstudio
DEG
limma
updated 10 hours ago by
swbarnes2
14k • written 20 hours ago by
egascon
• 0
0
votes
0
replies
58
views
What's next after GATK variant calling pipeline?
GATK
pipeline
figures
DNA-seq
10 hours ago by
mgranada3
▴ 30
0
votes
0
replies
55
views
Add line under stat test
stats
R
10 hours ago by
Ghada
• 0
1
vote
5
replies
746
views
Converting IGV to Figure using Illustrator (or other tools)
Illustrator
IGV
written 6 months ago by
Daniel
▴ 30
0
votes
0
replies
57
views
DOCK6 installation on MacOS M1
installation
troubleshooting
DOCK6
updated 12 hours ago by
GenoMax
142k • written 13 hours ago by
Rodolfo Adrián
• 0
1
vote
3
replies
144
views
Genotyping sites with N in reference genome
GATK
UnifiedGenotyper
updated 12 hours ago by
Zhenyu Zhang
★ 1.2k • written 13 hours ago by
shpak.max
▴ 50
0
votes
1
reply
102
views
Can 5' and 3' scRNAseq be processed with the same pipeline?
singlecell
seurat
10XGenomics
scRNAseq
updated 13 hours ago by
yura.grabovska
▴ 70 • written 14 hours ago by
ev97
▴ 20
0
votes
3
replies
132
views
Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL > pointer.
blast
meta
how-to
ncbi
forum
1 hour ago by
hophuquy0944
• 0
0
votes
4
replies
164
views
Sequencing Depth (Read Depth) Calculations
depth
4 hours ago by
LucisTheFather
• 0
0
votes
1
reply
92
views
Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
annotation
vcf
vep
zygosity
deepvariant
14 hours ago by
asalimih
▴ 60
0
votes
0
replies
66
views
Is it okay to assemble my 12 metatranscriptome samples with Trinity separately?
trinity
metatranscriptome
14 hours ago by
jway
• 0
2
votes
2
replies
130
views
Cannot install bwa-mem2 via conda
conda
mamba
python
code
updated 14 hours ago by
Istvan Albert
100k • written 15 hours ago by
jsmith120f
• 0
2
votes
2
replies
153
views
genome finishing
finishing
genome
updated 15 hours ago by
nd48
▴ 20 • written 19 hours ago by
trezini
• 0
1
vote
5
replies
171
views
Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
circos
atacseq
updated 15 hours ago by
Pierre Lindenbaum
161k • written 16 hours ago by
biology_inform
▴ 50
1
vote
4
replies
233
views
Add stats to boxplot in R
stats
R
12 hours ago by
Ghada
• 0
0
votes
0
replies
79
views
Seurat v5 and how to correctly integrate across multiple experiments
Seurat
scRNA
R
updated 15 hours ago by
ATpoint
82k • written 16 hours ago by
yura.grabovska
▴ 70
0
votes
0
replies
70
views
Difference in number of reads when using duplex and simplex base calling with Dorado
base
calling
nanopore
simplex
dorado
duplex
16 hours ago by
Lélé
▴ 10
0
votes
3
replies
166
views
calculating genomic coverage/ base overlap in R
bioinoformatics
genomics
updated 12 hours ago by
marco.barr
▴ 120 • written 18 hours ago by
Sayantani
• 0
0
votes
3
replies
139
views
Annotating file using bcftools
annotation
plink
bcftools
7 hours ago by
kl
▴ 10
0
votes
9
replies
272
views
Duplicated reads (IDs) from nanopore sequencing
bam
nanopore
sequencing
10 minutes ago by
njornet
▴ 20
0
votes
3
replies
126
views
Problem with Calling Variants from RNA-Seq data
vcf
gatk
benchmark
giab
rna-seq
19 hours ago by
Esraa
• 0
1
vote
1
reply
116
views
Getting differential ChIP-seq peaks between conditions after calling consensus peaks
MAnorm
ChIP-seq
consensus
peaks
updated 20 hours ago by
ATpoint
82k • written 22 hours ago by
Alexandra
• 0
1
vote
1
reply
192
views
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
limma
updated 21 hours ago by
dariober
14k • written 2 days ago by
Holly
▴ 10
1
vote
4
replies
238
views
Filtering VCF files based on VAF giving incorrect results
bcftools
GATK
Bioinformatics
picard
VCF
9 hours ago by
Arton
▴ 10
0
votes
0
replies
78
views
ReactomeGSA
ReactomeGSA
22 hours ago by
Shaimaa Gamal
▴ 10
0
votes
0
replies
72
views
News:
New course: Manipulation of NGS Data for Genomic and Population Genetics Analyses
KeepLearning
TScourses
22 hours ago by
Transmitting Science communication
▴ 70
0
votes
5
replies
242
views
bbmerge (bbmap) ~ error with insert size file output
bbtools
bbmerge
bbmap
updated 5 hours ago by
GenoMax
142k • written 1 day ago by
chrisk
• 0
0
votes
1
reply
119
views
perseus software (version 1.5.5)
preseus
mass
spectrometry
data
updated 16 hours ago by
Joe
21k • written 1 day ago by
iqra
• 0
0
votes
0
replies
86
views
Why the shape of RCS is contradictory to the p value for nonlinearity.
RCS
ggplot2
ggplot
R
updated 1 day ago by
GenoMax
142k • written 1 day ago by
Dude
• 0
0
votes
0
replies
82
views
NEURON, Brian2, NEST, or PyNN
NEST
NEURON
PyNN
Brian2
1 day ago by
brunofelicianodeomena
• 0
1
vote
2
replies
179
views
Alphafold 3 pLDDT coloring scheme in chimerax?
ChimeraX
Alphaphold
Alphaphold3
updated 23 hours ago by
colindaven
6.4k • written 1 day ago by
mbrav005
• 0
0
votes
1
reply
135
views
Polish a large genome with Pilon
Pilon
Pacbio
Polish
Illumina
1 day ago by
sansan_96
▴ 90
1
vote
2
replies
198
views
Doubt about the process of annotation, detection, identification and classification of transposable elements
annotation
TransposableElements
10 hours ago by
MarcosCosta
• 0
2
votes
2
replies
189
views
Genome Visualization Tools
bacterial
genome
updated 1 day ago by
GenoMax
142k • written 1 day ago by
dlera.lozano
▴ 10
2
votes
3
replies
200
views
RSeQC : infer_experiment.py Error: Could not retrieve index file
RSeQC
RNA-Seq
updated 1 day ago by
Ram
43k • written 1 day ago by
Prawesh
• 0
1
vote
3
replies
262
views
Using ggplotly in R
ggplot
ggplotly
updated 15 hours ago by
jared.andrews07
★ 16k • written 1 day ago by
jen
▴ 10
0
votes
1
reply
157
views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart
RNAseq
kallisto
updated 1 day ago by
GenoMax
142k • written 1 day ago by
bioinfo
▴ 150
116,967 results • Page
1 of 2340
Recent Votes
A: ensembl gene id
A: How to deal with the case that one gene symbol matches multiple ensembl ids?
Answer: DESeq2 error
Answer: Using ggplotly in R
Comment: How to calculate coverage of Nanopore long read data?
Answer: In one PCA plot, can I calculate the percentage of different factors that contri
Answer: Calculate allelic frequency from VEP output vcf file
Recent Locations •
All
Bologna,
4 minutes ago
Spain,
5 minutes ago
India,
6 minutes ago
Pakistan,
7 minutes ago
Australia,
10 minutes ago
India,
11 minutes ago
Japan,
12 minutes ago
Recent Awards •
All
Scholar
to
ramiro.barrantes
• 0
Popular Question
to
AshleeThomson
▴ 80
Popular Question
to
vk
▴ 10
Scholar
to
Prawesh
• 0
Popular Question
to
Jean-Karim Heriche
27k
Popular Question
to
Chironex
▴ 40
Scholar
to
rpolicastro
13k
Recent Replies
Comment: Duplicated reads (IDs) from nanopore sequencing
by
njornet
▴ 20
I've looked into it and one of the reads with a supplementary alignment has the representative alignment aligning to the + strand and being…
Answer: Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script
by
kuttibiotech2009
▴ 30
Hello friends, Thank you for your feedback. I understand that the post may not directly relate to bioinformatics. My aim was to share …
Comment: how to treat the replicates while performing WGCNA
by
andres.firrincieli
3.6k
You do not merge the MEs. It is quite normal that some modules have noisy eigengenes (MEs); WGCNA is an unsupervised analysis overall. By …
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
my blast is latest version 2.15. I don't know what you want me to see in this link.
Answer: scRNAseq quality control weird double curve in nFeature vs nCount plot
by
valdirbarth
▴ 20
Is it possible that the cells that have their VDJ sequenced, those VDJ reads are not contributing to new genes detected? So you might be …
Comment: ggrepel function: geom_text_repel()
by
ntsopoul
▴ 60
The plot looks confusing, chek the documentation there is an attribute called force. If you reduce the value you should get better results.…
Comment: Sequencing Depth (Read Depth) Calculations
by
LucisTheFather
• 0
Understood! Gonna try those two!
Comment: Sequencing Depth (Read Depth) Calculations
by
LucisTheFather
• 0
Thank u very much!
Comment: How to extract cells of different species after mapping with combined genome?
by
GenoMax
142k
You have used the tag `snRNAseq`. I am not familiar with singleron tech but if you have sequence data you may be able to use `xenome` or `b…
Comment: bbmerge (bbmap) ~ error with insert size file output
by
GenoMax
142k
It may be best to go back to the original data and then do `bbmerge.sh` on it to get original insert size estimates (before any operations …
Comment: bbmerge (bbmap) ~ error with insert size file output
by
chrisk
• 0
Hi Brian, Thank you and apologies for the extra future revision works. Out of curiosity we disabled neural networks 'nn=f' and the file o…
Comment: bbmerge (bbmap) ~ error with insert size file output
by
chrisk
• 0
Hi Genomax, This is the thread: https://www.biostars.org/p/9582467/ Cheers, Chris
Comment: Inquiry about deseq2 transformation
by
Chen
• 0
that's helpful, thanks :)
Comment: bbmerge (bbmap) ~ error with insert size file output
by
Brian Bushnell
20k
Ah, this is a little embarrassing; those are the vectors for the neural network. I overloaded a field that was being used for the insert s…
Comment: Annotating file using bcftools
by
kl
▴ 10
Thanks - I corrected it. It doesn't seem to annotate. I converted to binary after which is what is shown below. It is not the output I want…
Traffic: 1825 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6