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Recent Replies
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by
ATpoint
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I think you're misunderstanding some concepts here.
WGCNA is a framework that defines modules based on how and which genes are correlated …
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> most up-to-date build
Major build of the genome remains GRCh38. What you are looking at is the latest patch release for that build. Only…
Comment: Can I perform a correlation test with 3 biological replicates per condition?
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Thank you @atpoint . My apologies, maybe I should rephrase the question. I read the WGCNA docs already, and for the Pearson correlation tes…
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Can you confirm that this answer is specific for `singleron` technology and associated bioinformatics software.
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What OS are you using? Are you able to run `blastn --help` and does it produce the in-line help?
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> However, even though 3 biological replicates per condition seems to be the norm in these experiments, many papers discuss that we need at…
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> I have curiosity, why do you make a desing with interceptor and without contrast matrix?
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If you have a one-click workflow ready and the necessary computation power to casually run it, then go for it. If it is any greater effort …
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In my experience integration methods are also often used for different samples/batches across the same technology. The crucial thing is to …
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Thank you very much!
I have repeated the code adding arrayWeights() and it's works! In this case, I have a desing without intercept and c…
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If the tool mentioned relates to the Perseus application from the Cox lab ([here][1]), it should be free to download after accepting the li…
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At least so far to my knowledge, I don't think it would be worth re-mapping to GRCh38.p14, if it is too much trouble or with what you're lo…
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From the marker genes of each cluster, we can determine whether the cluster belongs to human or mouse. Human genes are all capitalized, whi…
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Thanks a lot. It is almost what I need but not all.
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