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415 results • Page 4 of 9
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15
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6
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4.3k
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Forum: Which database software is better for bioinformatics web development? MySQL or MongoDB?
database mysql mongodb software
updated 11 months ago by 43k • written 5.7 years ago by ▴ 10
7
votes
6
replies
767
views
Forum: where to work as a bioinformatician (NGS/IA)
employment omics ia ngs
updated 4 months ago by 43k • written 4 months ago by ▴ 20
3
votes
6
replies
1.1k
views
Forum: How to become a moderator and other ways of contributing to Biostars
meta biostars
updated 12 months ago by 43k • written 19 months ago by 6.2k
3
votes
6
replies
1.5k
views
6 follow
Forum: Is Bioinformatics a Professional Degree?
career degree
8 months ago by anasjamshed ▴ 120
11
votes
6
replies
1.6k
views
Forum: Posting a preprint paper on biostars.com
preprint
updated 11 months ago by 43k • written 5.6 years ago by ▴ 760
10
votes
6
replies
2.2k
views
Forum: How to acknowledge in the paper a reference genome that hasn't been published yet?
reference paper
updated 11 months ago by 43k • written 5.7 years ago by ▴ 140
2
votes
6
replies
3.1k
views
Forum: RIP CentOS, CentOS 8 to be EOL'd in 2021
centos linux-distro os
updated 11 months ago by 43k • written 3.4 years ago by 11k
2
votes
6
replies
1.2k
views
Forum: Would love to hear from you re: which bionformatics resources could use an improvement in their interface.
seq database gene prot
updated 11 months ago by 43k • written 4.1 years ago by • 0
1
vote
6
replies
2.2k
views
Forum: shotgun sequencing and clone-based sequencing
sanger-sequencing
updated 12 months ago by 43k • written 6.7 years ago by • 0
7
votes
6
replies
1.8k
views
Forum: Bioinformaticians - Am I on the Right Track?
Career
updated 11 months ago by 43k • written 4.4 years ago by ▴ 80
8
votes
6
replies
4.8k
views
6 follow
Forum: Are OTUs an accurate measure of abundance?
next-gen 16S-rRNA
updated 12 months ago by 43k • written 6.3 years ago by ▴ 30
6
votes
6
replies
1.3k
views
Forum: How can I deal with this publication issue?
publication
updated 11 months ago by 43k • written 6.1 years ago by ▴ 10
5
votes
6
replies
1.3k
views
Forum: The best way to share scientific findings with community
Scientific-findings
updated 12 months ago by 43k • written 6.6 years ago by ★ 4.3k
3
votes
6
replies
2.0k
views
Forum: Are you using GATK ?
GATK4 GATK
updated 12 months ago by 43k • written 6.6 years ago by ▴ 20
4
votes
6
replies
965
views
6 follow
Forum: Bioinformatics: what do you think of it in the next 20 years?
future
updated 5 months ago by 43k • written 5 months ago by • 0
8
votes
6
replies
2.5k
views
Forum: How do you organize sequence data (FASTQs)?
RNA-Seq sequencing
updated 11 months ago by 43k • written 6.1 years ago by ▴ 280
8
votes
6
replies
2.9k
views
Forum: Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by 10k
6
votes
6
replies
2.5k
views
Forum: Trouble finding job with MS in Bioinformatics
next-gen
updated 11 months ago by 43k • written 6.0 years ago by ▴ 10
4
votes
6
replies
2.9k
views
Forum: NGS Data Storage Best Practices (Clinical)
NGS clinical storage
updated 11 months ago by 43k • written 4.4 years ago by ▴ 630
13
votes
6
replies
1.2k
views
Forum: To Cloud or Not to Cloud - Privacy implications of genetic data sharing
security diagnostics DNA-Seq
updated 11 months ago by 43k • written 4.9 years ago by 11k
10
votes
6
replies
1.3k
views
6 follow
Forum: Pros and cons to do biomedical research in pharmaceutical company
industry career academia
updated 11 months ago by 43k • written 4.2 years ago by ★ 9.4k
7
votes
6
replies
2.8k
views
7 follow
Forum: Should I specialise in bioinformatics?
career
updated 11 months ago by 43k • written 5.6 years ago by ▴ 10
7
votes
6
replies
3.1k
views
Forum: transition to bioinformatics
career wet-lab
updated 11 months ago by 43k • written 5.9 years ago by • 0
14
votes
6
replies
2.5k
views
6 follow
Forum: Bioinformatics experience in programming
python R
updated 11 months ago by 43k • written 5.7 years ago by ▴ 20
16
votes
6
replies
8.2k
views
7 follow
Forum: What computer skills should I put on my resume?
resume genome
updated 12 months ago by 43k • written 6.4 years ago by ▴ 30
9
votes
6
replies
1.9k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 8 months ago by 82k • written 18 months ago by ▴ 30
2
votes
6
replies
1.0k
views
Forum: Error in posting to Biostars?
meta
updated 11 months ago by 43k • written 4.4 years ago by ▴ 60
0
votes
6
replies
2.1k
views
7 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers
software-error
updated 11 months ago by 43k • written 5.7 years ago by • 0
23
votes
6
replies
13k
views
Forum: List Of File Formats Used In Bioinformatics?
bioinformatics
updated 10 months ago by 43k • written 11.6 years ago by ▴ 140
1
vote
6
replies
1.4k
views
Forum: Genetic variation data analysis frequently tricky problems and troubleshot
vcf SNP plink
updated 11 months ago by 43k • written 6.1 years ago by ★ 9.4k
6
votes
6
replies
807
views
Forum: You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical thought-experiment
9 weeks ago by jared.andrews07 ★ 16k
5
votes
6
replies
1.1k
views
Forum: COVID19 testing - can we/should we use NGS?
NGS covid19 diagnostics
updated 11 months ago by 43k • written 4.2 years ago by ★ 1.4k
19
votes
6
replies
3.5k
views
Forum: ngs vs microarray
microarray ngs
updated 11 months ago by 43k • written 5.8 years ago by ▴ 20
9
votes
6
replies
1.4k
views
Forum: New Aligner Tool - Would you be interested in this ?
ChIP-Seq alignment Assembly next-gen rna-seq
updated 11 months ago by 43k • written 6.1 years ago by ▴ 30
12
votes
5
replies
2.6k
views
Forum: We Need Your Input! Help Get Information For The Informatics Community And Get A Free Gift Card!
algorithm ngs
updated 11 months ago by 43k • written 11.0 years ago by ▴ 30
7
votes
5
replies
956
views
Forum: scRNA rising in popularity, what comes next?
scRNA
updated 11 months ago by 43k • written 4.1 years ago by ▴ 20
11
votes
5
replies
6.5k
views
Forum: Slurm, Son of Grid Engine, Mesos, and Hadoop YARN vs HTCondor and Torque
PBS HPC SDSC Torque
updated 11 months ago by 43k • written 5.8 years ago by ★ 9.4k
1
vote
5
replies
1.4k
views
Forum: PhD: Research interest or better program?
PhD
updated 11 months ago by 43k • written 4.9 years ago by • 0
2
votes
5
replies
1.5k
views
Forum: transfer from computations to experiments?
postdoc
updated 12 months ago by 43k • written 6.3 years ago by ▴ 10
2
votes
5
replies
1.5k
views
Forum: Looking for co-author with Bioinformatics background for paper using Machine Learning in Biology
neural-networks lncRNA RNN FEELnc
updated 11 months ago by 43k • written 5.7 years ago by ▴ 20
4
votes
5
replies
1.4k
views
6 follow
Forum: Which Bioinformatics Master's degree is better?
career masters
updated 12 months ago by 43k • written 18 months ago by • 0
5
votes
5
replies
941
views
Forum: What will happen to data analysts after COVID-19 pandemic
COVID
updated 11 months ago by 43k • written 4.1 years ago by ★ 4.3k
6
votes
5
replies
1.7k
views
Forum: Very generally speaking, what are valid criteria to decide that a sample is an outlier?
outliers
updated 12 months ago by 43k • written 3.4 years ago by ▴ 330
19
votes
5
replies
1.2k
views
6 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics snps survey papers
4 months ago by Raony Guimarães ★ 1.4k
6
votes
5
replies
1.9k
views
Forum: Stanford HCP MS Biomedical Informatics vs Johns Hopkins MS Bioinformatics
career
updated 11 months ago by 43k • written 4.3 years ago by ▴ 70
2
votes
5
replies
1.4k
views
Forum: Sequence Finder Project - I want to hear from you
UI sequencing gene Python sequence
updated 11 months ago by 43k • written 6.1 years ago by • 0
4
votes
5
replies
1.1k
views
Forum: A silly question about journal clubs
journal-club challenge
updated 11 months ago by 43k • written 4.2 years ago by ▴ 280
14
votes
5
replies
7.0k
views
Forum: Seurat vs Monocle
R RNA-Seq next-gen single-cell
updated 11 months ago by 43k • written 4.9 years ago by 3.2k
6
votes
5
replies
1.0k
views
Forum: Russian universities for the study of biomedicine
russian-university
updated 11 months ago by 43k • written 3.8 years ago by ▴ 30
5
votes
5
replies
2.4k
views
Forum: BCL files as deliverables from a sequencing center
core-facility service-provider
updated 11 months ago by 43k • written 5.0 years ago by 5.2k
415 results • Page 4 of 9
Recent Votes
Answer: Filtering Multi-sample VCF file for all except one Genotype
Answer: Alphaphold 3 pLDDT coloring scheme in chimerax?
Comment: Benchmarking RNASeq Variant Calling Pipeline (Short Reads)
Comment: Bamutils/ClipOverlap
Comment: How to calculate coverage of Nanopore long read data?
Comment: Overlapping Ranges within Granges object
Answer: Difference between Genotype 0|1 and 1|0 in VCF file?
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Recent Replies
Comment: Filtering Multi-sample VCF file for all except one Genotype by schmince • 0
Thanks, that was exactly what i needed
Comment: Benchmarking RNASeq Variant Calling Pipeline (Short Reads) by Esraa • 0
Thank you! I will try searching for this more and see if it would fit my analysis purposes.
Comment: Benchmarking RNASeq Variant Calling Pipeline (Short Reads) by Esraa • 0
Thank you so much for answering! I actually found some studies doing it the way you mentioned. I ran the GATK best practices pipeline on t…
Comment: BWA alignment by a.alnawfal.1992 ▴ 260
that's great, but i believe the issue is related to stdin rather than index
Comment: BWA alignment by a.alnawfal.1992 ▴ 260
it is not!!
Comment: How to calculate coverage of Nanopore long read data? by Arton • 0
Thank you! I eventually used the information generated by three tools (samtools coverage+ mosdepth + NanoPlot).
Comment: Alphaphold 3 pLDDT coloring scheme in chimerax? by mbrav005 • 0
Thank you Sir! you are right my model is not very good. Do You know how I can improve the scores. Also I am able to color the structure by …
Comment: Polish a large genome with Pilon by sansan_96 ▴ 90
..........
Comment: Overlapping Ranges within Granges object by ntsopoul ▴ 60
you are on to something… if I use reduce to find the “overlaping regions” in a secon GRanges object, what do I do next?
Comment: Using ggplotly in R by jen ▴ 10
Thank you Jared for your response. I took a look at the documentation you provided and am trying my best to follow along, but can't seem to…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred by Juke34 8.6k
Right I heard there is an issue since Perl v5.36. You may have better luck using conda. Or the best way is to use the container. Or downgra…
Answer: Alphaphold 3 pLDDT coloring scheme in chimerax? by Mensur Dlakic ★ 27k
pLDDT scores are stored in the so-called B-factor column in PDB files. Below the `File` ribbon select `Molecule Display` and click on `b-fa…
Comment: Genome Visualization Tools by dlera.lozano ▴ 10
Thank you so much
Answer: Doubt about the process of annotation, detection, identification and classificat by Mensur Dlakic ★ 27k
Depends on the context. `TE detection` and `TE identification` could mean the same thing if they refer to presence/absence of TEs. `TE iden…
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr by Ram 43k
Please accept your own answer to mark the post as solved.
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