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Gon • 50
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166
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105
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8
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written 29 days ago by
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2
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written 26 days ago by
bcallah • 10
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written 6.7 years ago by
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20 days ago by
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written 20 days ago by
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20 days ago by
Devon Ryan ♦ 68k
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210
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201
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written 29 days ago by
debbie.ramseier • 10
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genomax ♦ 29k
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Recent Replies
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A: biomarkers identification by data mining of public genomic tumour databases in R by
Kevin Chu • 0
If you want to analyze the TCGA data, I would recommend the TCGA-biolinks, which is a Bioconducto...
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Just put them through BlastP?
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For genes on the `-` strand, you don't want exon 1, but the last exon. You'll note it has frame 0.
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See this: https://www.biostars.org/p/157223/ You should also try BioMart and the Ensembl regula...
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Thanks. I am new to such analysis and R so its difficult to follow the methods section exactly. T...
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genomax ♦ 29k
Simply put a valid fastq record will always need to have 4 lines. The first line should start wit...
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vchris_ngs • 3.4k
Ah nice, this is nice. Have not had paired data for a while probably that is the reason I was con...
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Devon Ryan ♦ 68k
Again, such files are so obscure and old (I've never even seen one and I've been doing this for a...
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You're using DESeq2, so `counts(dds, normalized=T)` will give you more useful values.
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Devon Ryan ♦ 68k
The pairing already took place in the model fit, so unless someone wants to look at per-subject c...
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C: How to perform DESeq2 based on paired sample test? by
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I've deleted those two samples completely, including the levels 1 and 7 in fishGroup: > l...
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arup • 10
The bedGraph file you have don't use the correct formatting. A standard bedGraph file will be lik...
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