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Comment: What is exactly meant by "GENCODE TSS"?
by
ConvolutedGenome
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I dont think im confusing the two, is what I meant:
I originally said that the “start” coordinate of every entry termed “transcript” under…
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Your account has been suspended for bad behavior. I've re-opened the posts that you deleted because those posts belong to the community, no…
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No. I think you can compare average TPMs as long as you explicitly mention that anywhere you report metrics but don't average counts.
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I wrote https://jvarkit.readthedocs.io/en/latest/SamRemoveDuplicatedNames/ to remove this kind of reads, but I'm not sure it's what you're …
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Nobody
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can you delete my account please, because i can't do it by myself.
Thank you
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twrl8
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Thank you very much! I will try using the singularity options.
Thank you for that aswell. I will keep an eye on the docker hub for newer v…
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ncbi blast a sequence accession vs the other ? then select the multiple sequence alignment view ?
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So can I average 6 replicates??
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Don't use `--merge_loci` in your command line this was for AGAT version <1.0.0 (and only few scripts), now this is handled via the config.y…
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> Because you just answer
No we don't. I think you're confusing this professional forum contributed to by volunteers with a customer suppo…
Comment: Can I use abundance from Tximport to compare the expression level of transcript
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Ram
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Oh, you can just use TPM to do that. Within sample comparison is a completely different (and much easier) game.
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Unfortunately yes, there does seem to be a problem with using the older version - when I came to do more analysis yesterday, the enrichKEGG…
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Nobody
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Because you just answer when it's a stupid question or when I ask a lot of questions. This is for asking questions not for being judged by …
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Manav
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Thanks, tried working with the dataset and workflow. It worked.
Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
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BioinfoBee
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@juke34 Thanks again. I changed the config.yaml
*should overlapping loci (at CDS level) be merged in a single locus
Only one gene is kept,…
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