Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this year
all time
today
this week
this month
this year
1,000 results • Page
4 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
4
replies
523
views
how to find genes that are significantly expressed in brain cortex samples
rna-seq
gene-expression
updated 5 days ago by
ATpoint
82k • written 6 days ago by
rheab1230
▴ 140
0
votes
2
replies
260
views
bam merging for archaic samples
samtools
bam
updated 5 days ago by
Ram
43k • written 6 days ago by
Matteo Ungaro
▴ 100
7
votes
6
replies
466
views
Filtering sam or bam file with maximum matching region
crisper-edited
alignment
match
5 days ago by
analyst
▴ 30
1
vote
1
reply
257
views
Removing Illumina microarray probes with no expression HumanHT-12v4
microarray
HumanHT-12v4
Illumina
updated 6 days ago by
Gordon Smyth
★ 7.0k • written 6 days ago by
Bioinformatician
• 0
1
vote
0
replies
539
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers
TRINITY
6 days ago by
mathavanbioinfo
▴ 90
1
vote
1
reply
297
views
GTF file from Stringtie to R Studio for either Ballgown or DESeq2
Stringtie
Cufflinks
Ballgown
DESeq2
updated 6 days ago by
Ram
43k • written 6 days ago by
Nina
• 0
2
votes
5
replies
519
views
MEGA Analysis Issue on High-Performance Computer
phylogenetic-analysis
MEGA
updated 5 days ago by
Mensur Dlakic
★ 27k • written 6 days ago by
Giorgio
• 0
2
votes
1
reply
286
views
Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
shotgun
metagenomics
blastp
taxonomy
updated 6 days ago by
GenoMax
141k • written 6 days ago by
rebecca.calvo
• 0
0
votes
0
replies
212
views
Using samtools with GCS (google cloud storage) on a docker container seems to give "Protocol Not Supported" error
samtools
gcs
5 days ago by
abhishekghadge
• 0
2
votes
5
replies
685
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 5 days ago by
Jesse
▴ 740 • written 6 days ago by
Ann
★ 2.4k
0
votes
0
replies
187
views
agilent microarray gpl data does not have gene symbol column
microarray
agilent
gpl
updated 6 days ago by
Ram
43k • written 6 days ago by
mja
• 0
0
votes
0
replies
188
views
scRNA Cluster frequency
CV
PCA
scRNA
Cluster-Frequency
6 days ago by
Nitin
• 0
1
vote
5
replies
560
views
Duplicate marking, read names, and the SRA
SRA
MarkDuplicates
updated 6 days ago by
GenoMax
141k • written 6 days ago by
Luka
• 0
0
votes
0
replies
189
views
absolute path for symbolic links in Snakefile
Snakemake
updated 6 days ago by
Ram
43k • written 6 days ago by
yifangt86
▴ 60
0
votes
0
replies
181
views
Chemical structure validation
structure
cap
validation
metabolite
6 days ago by
Rodolfo Adrián
• 0
3
votes
8
replies
1.2k
views
Cellranger count error: Input FASTQ file ended prematurely
scRNA-seq
Cellranger
STARsolo
10X
updated 6 days ago by
swbarnes2
14k • written 9 months ago by
bp22
▴ 80
0
votes
1
reply
261
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated 6 days ago by
GenoMax
141k • written 7 days ago by
bioyas
▴ 10
0
votes
0
replies
204
views
Copy number variation plot
Copy-number-variation
genomics
updated 7 days ago by
Ram
43k • written 7 days ago by
Emmi
• 0
1
vote
5
replies
699
views
RNA seq differential expression analysis
RNA-seq
normalization
updated 7 days ago by
BioinfGuru
★ 1.7k • written 8 days ago by
rrehimi
• 0
0
votes
0
replies
179
views
SNP calling with ANGSD and ngsLD. How many SNPs?
lcwgs
ngsTools
ANGSD
genomics
7 days ago by
DanielEB_fisk
▴ 20
0
votes
1
reply
283
views
Could you please assist in identifying this cluster?
single-cell
updated 7 days ago by
Ram
43k • written 7 days ago by
Kazo
• 0
4
votes
9
replies
2.6k
views
Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
RNA-Seq
written 8.2 years ago by
dvelmeshev
• 0
2
votes
7
replies
5.3k
views
6 follow
Memory usage of picard Samsort
Picard
SortSam
updated 7 days ago by
ATpoint
82k • written 7.2 years ago by
boymin2020
▴ 80
5
votes
13
replies
1.1k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
R
Ubuntu
Linux
Bioconductor
Rstudio
updated 6 days ago by
ATpoint
82k • written 7 days ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
412
views
Plink merge errors.
cygwin64
bed
PLINK
7 days ago by
Dinmukhamed
• 0
0
votes
0
replies
196
views
Conversion to tree format
PLINK
bed
Figtree
SplitsTree
updated 7 days ago by
Ram
43k • written 7 days ago by
Dinmukhamed
• 0
0
votes
0
replies
196
views
miRDeep2: How to get the read counts
mirdeep2
7 days ago by
Atul K.
• 0
3
votes
4
replies
655
views
Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (without Blat)
mapping
4 days ago by
rahu
• 0
0
votes
0
replies
201
views
Lncipedia GTF file error
Proteomics
updated 7 days ago by
Ram
43k • written 7 days ago by
atharvakarkare14
▴ 10
7
votes
3
replies
2.8k
views
Tutorial:
Prediction of Ribosomal RNA Genes Using RNAmmer Software
Annotation
rRNA
RNAmmer
Genome
updated 7 days ago by
colindaven
6.4k • written 15 months ago by
Dr.Animo
▴ 130
3
votes
3
replies
470
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 6 days ago by
swbarnes2
14k • written 7 days ago by
joe
▴ 510
0
votes
2
replies
537
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
7 days ago by
航太郎
• 0
11
votes
12
replies
944
views
Downloaded pdb's on rcsb.org
rcsb
pdb
updated 7 days ago by
Ram
43k • written 8 days ago by
iamsmor
• 0
0
votes
0
replies
213
views
create genewise sync file in popoolation
popoolation
updated 7 days ago by
GenoMax
141k • written 7 days ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
372
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
7 days ago by
Ashok
• 0
0
votes
2
replies
410
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
7 days ago by
Ashok
• 0
0
votes
0
replies
212
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 8 days ago by
Ram
43k • written 8 days ago by
samuelkalandarov2002
▴ 10
1
vote
1
reply
369
views
Problem with Mirdeep2 and Randfold output
mirdeep2
Randfold
8 days ago by
otieno43
▴ 30
0
votes
2
replies
420
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
7 days ago by
_quantum_girl_
▴ 10
0
votes
0
replies
202
views
traying to make a maf from an already annotated vcf
vcf
vcf2maf
maf
maftools
VEP
4 days ago by
Javier
• 0
1
vote
4
replies
682
views
What happened to Tombo Re-squiggle
Tombo
resquiggle
ONT
updated 8 days ago by
Ram
43k • written 3 months ago by
turcoa1
• 0
0
votes
0
replies
177
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
8 days ago by
enferdeflame
• 0
1
vote
1
reply
414
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 5 days ago by
Gordon Smyth
★ 7.0k • written 8 days ago by
Chris
▴ 260
0
votes
0
replies
189
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 8 days ago by
Ram
43k • written 8 days ago by
carlopecoraro2
★ 2.5k
3
votes
9
replies
795
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
updated 8 days ago by
Elisabeth Gasteiger
★ 2.4k • written 8 days ago by
Jacky
• 0
0
votes
1
reply
267
views
10x VDJ (TCR/BCR) BAM to fastq
TCR
VDJ
BCR
10x
updated 8 days ago by
GenoMax
141k • written 8 days ago by
predeus
★ 1.9k
0
votes
1
reply
267
views
DEseq2
RNA-seq
DESeq2
updated 8 days ago by
Ram
43k • written 8 days ago by
rrehimi
• 0
0
votes
0
replies
175
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 8 days ago by
Ram
43k • written 8 days ago by
carlopecoraro2
★ 2.5k
4
votes
2
replies
320
views
Assume "yes" as the answer to any prompts with bioconda
docker
container
bioconda
updated 8 days ago by
Juke34
8.5k • written 8 days ago by
njornet
▴ 20
1
vote
0
replies
176
views
Tutorial:
DNA Methylation: Sequencing Techniques
WGBS
RRBS
8 days ago by
Novogene
▴ 420
1,000 results • Page
4 of 20
Recent Votes
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
A: How to process (seems) Agilent microarrry data?
Comment: genome assembly records not present in assembly_summary.txt
Answer: genome assembly records not present in assembly_summary.txt
Answer: PCA plot (Suggestions Needed)
Comment: PCA plot (Suggestions Needed)
Comment: PCA plot (Suggestions Needed)
Recent Locations •
All
United States,
just now
United States,
1 minute ago
Canada,
1 minute ago
Sweden,
7 minutes ago
India,
7 minutes ago
United States,
10 minutes ago
United States,
10 minutes ago
Recent Awards •
All
Popular Question
to
BioinfGuru
★ 1.7k
Scholar
to
bk11
★ 2.4k
Popular Question
to
vinayjrao
▴ 250
Supporter
to
Jalil Sharif
▴ 80
Popular Question
to
sil_bioinfo
▴ 40
Popular Question
to
sapuizait
▴ 10
Voter
to
analyst
▴ 30
Recent Replies
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★ 2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value. https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴ 10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★ 2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes? Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★ 3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq
by
pinheirofabiano
▴ 10
install.packages("pheatmap") library(pheatmap) setwd("/Users/data_analysis/results") data <- read.table(file…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
bedtools intersect \ -a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \ -b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
• 0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question
by
starswillfade
▴ 10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question
by
starswillfade
▴ 10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
Answer: genome assembly records not present in assembly_summary.txt
by
GenoMax
141k
Can you clarify what `metainfo` you are referring to? The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
Traffic: 3039 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6