updated 26 days ago by
Brian Bushnell
19k
•
written 12.4 years ago by
2184687-1231-83-
★
5.1k
24
votes
12
replies
7.1k
views
8 follow
24
votes
9
replies
10k
views
6 follow
24
votes
14
replies
8.1k
views
9 follow
24
votes
11
replies
10k
views
updated 25 days ago by
Ram
41k
•
written 13.7 years ago by
Yannick Wurm
★
2.5k
23
votes
21
replies
7.7k
views
9 follow
updated 18 days ago by
Mensur Dlakic
★
25k
•
written 4.1 years ago by
grey
▴
30
23
votes
9
replies
6.9k
views
updated 23 days ago by
Ram
41k
•
written 13.7 years ago by
Istvan Albert
99k
23
votes
4
replies
34k
views
22
votes
8
replies
8.5k
views
7 follow
updated 23 days ago by
Ram
41k
•
written 13.7 years ago by
Eric Normandeau
11k
22
votes
21
replies
4.4k
views
7 follow
updated 20 days ago by
Ram
41k
•
written 13.6 years ago by
Khader Shameer
18k
22
votes
7
replies
24k
views
21
votes
13
replies
10.0k
views
8 follow
updated 20 days ago by
Ram
41k
•
written 13.6 years ago by
Markus Krupp
▴
80
21
votes
11
replies
2.0k
views
6 follow
20
votes
14
replies
4.7k
views
6 follow
updated 26 days ago by
Ram
41k
•
written 13.7 years ago by
Jarretinha
3.4k
20
votes
5
replies
3.2k
views
updated 26 days ago by
Ram
41k
•
written 13.7 years ago by
Egon Willighagen
5.4k
20
votes
10
replies
14k
views
8 follow
updated 26 days ago by
Ram
41k
•
written 13.7 years ago by
Giovanni M Dall'Olio
28k
18
votes
20
replies
3.9k
views
9 follow
17
votes
3
replies
2.7k
views
13 days ago by
Ram
41k
17
votes
7
replies
4.0k
views
17
votes
14
replies
13k
views
10 follow
17
votes
2
replies
3.8k
views
updated 25 days ago by
Ram
41k
•
written 13.7 years ago by
Giovanni M Dall'Olio
28k
17
votes
11
replies
3.6k
views
updated 20 days ago by
Ram
41k
•
written 13.6 years ago by
Michael Barton
★
1.8k
17
votes
4
replies
5.9k
views
16
votes
5
replies
12k
views
updated 2 days ago by
Malachi Griffith
19k
•
written 13.2 years ago by
Abdel
▴
370
16
votes
11
replies
8.2k
views
7 follow
16
votes
13
replies
5.3k
views
16
votes
3
replies
4.3k
views
updated 23 days ago by
Ram
41k
•
written 13.6 years ago by
Pierre Lindenbaum
158k
16
votes
4
replies
10k
views
15
votes
20
replies
1.1k
views
15
votes
22
replies
8.3k
views
updated 26 days ago by
Ram
41k
•
written 13.7 years ago by
Jarretinha
3.4k
15
votes
16
replies
4.6k
views
updated 20 days ago by
Ram
41k
•
written 13.6 years ago by
Eric Normandeau
11k
14
votes
6
replies
6.0k
views
14
votes
10
replies
3.4k
views
6 follow
14
votes
5
replies
4.4k
views
14
votes
1
reply
10k
views
13
votes
5
replies
6.8k
views
updated 20 days ago by
Ram
41k
•
written 13.6 years ago by
Istvan Albert
99k
13
votes
6
replies
356
views
6 follow
13
votes
7
replies
6.0k
views
13
votes
3
replies
3.3k
views
13
votes
6
replies
9.1k
views
updated 20 days ago by
Ram
41k
•
written 13.6 years ago by
Allpowerde
★
1.3k
13
votes
11
replies
3.8k
views
updated 20 days ago by
Ram
41k
•
written 13.6 years ago by
Christiank
▴
70
13
votes
11
replies
15k
views
10 follow
updated 9 days ago by
sativus
▴
10
•
written 9.2 years ago by
dirigible2012
▴
320
12
votes
4
replies
4.5k
views
12
votes
3
replies
6.0k
views
updated 20 days ago by
Ram
41k
•
written 13.6 years ago by
Michael Kuhn
5.0k
12
votes
4
replies
9.4k
views
12
votes
11
replies
7.9k
views
8 follow
updated 23 days ago by
Ram
41k
•
written 13.7 years ago by
Eric Normandeau
11k
12
votes
6
replies
419
views
2 days ago by
blackadder
▴
30
11
votes
8
replies
7.9k
views
updated 23 days ago by
Ram
41k
•
written 13.7 years ago by
Eric Normandeau
11k
11
votes
6
replies
701
views
6 follow
updated 10 days ago by
jamesxli2007
▴
40
•
written 16 days ago by
synat.keam
▴
80
11
votes
7
replies
5.1k
views
6 follow
11
votes
4
replies
4.9k
views
Recent Votes
Recent Locations •
All
London, 3 minutes ago
Iran, 8 minutes ago
Canada, 8 minutes ago
United States, 9 minutes ago
Ukraine, 9 minutes ago
Pakistan, 12 minutes ago
United States, 13 minutes ago
Recent Awards •
All
Popular Question to
bioinfo355
•
0
Popular Question to
Pierre Lindenbaum
158k
Popular Question to
tomwr1ght
•
0
Popular Question to
leenkhoury282
•
0
Popular Question to
Sam
▴
300
Scholar to
alejandrogzi
▴
110
Recent Replies
Answer: Understanding gene level copy number data from TCGAbiolinks
by
bioinfo355
•
0
Were you able to get answer for your questions?
Answer: Error in blast+
by
Mensur Dlakic
★
25k
Joys of doing Bioinformatics on Windows, and consequently dealing with spaces in file and directory names.
I suggest you move your datab…
Comment: Which language use as a beginner in Bioinformatics and Computational genomics
by
Mensur Dlakic
★
25k
I assume here you mean the usefulness for common tasks such as file manipulation and pipeline creations. How would one do sequence assembly…
Answer: Which language use as a beginner in Bioinformatics and Computational genomics
by
Mensur Dlakic
★
25k
There is no single language that is best suited for all areas of Bioinformatics. If one's main interest is RNA-seq, R will probably be more…
Comment: Which language use as a beginner in Bioinformatics and Computational genomics
by
Brian Bushnell
19k
It depends on specifically what you will be doing. But IMO the order of importance is Bash > Python > R.
Comment: Bam files generated with STAR cause a segmentation fault core dump error when us
by
bkffadia
•
0
![Galaxy Command Line][1]
[1]: /media/images/8c45586a-e3e3-46dd-b06b-a9788a6e
Comment: RNA seq
by
Istvan Albert
99k
there is no need to "average" anything, the point of replicates and RNA-Seq in general, is to measure the same thing several times and use …
Answer: Which language use as a beginner in Bioinformatics and Computational genomics
by
Istvan Albert
99k
I would say every scientist needs to know R - so if you don't know R it would serve you well to learn it.
In my opinion Python is not we…
Answer: using RMA normalized microarray in Limma
by
ATpoint
78k
Arrays do not have counts. RMA-proceased data are fine. See limma user guide.
Comment: RNA seq
by
ATpoint
78k
What is the question? I assume you googled 'differential RNA-seq' and tried the obvious tools such as DESeq2 and limma?
Answer: Can't install hisat2 with miniconda
by
Istvan Albert
99k
You have installed the wrong version of conda.
Even on M1 (arm64 CPU) you need to be using the Intel-based (x64 CPU) conda installer. So …
Comment: Bioinformatics: what do you think of it in the next 20 years?
by
Istvan Albert
99k
Famous poet once said:
"We are what we were - and we will become what we are."
The previous generation sets the stage for the next.
Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
by
CTLong
▴
20
After reads are mapped to the genome, there are algorithms that quantify the number of mapped reads onto a genomic locus. Some of these alg…
Comment: Bioinformatics: what do you think of it in the next 20 years?
by
GenoMax
136k
> what do you think of it in the next 20 years?
It will be what people like you make of it (assuming you are just starting out and that is…
Comment: Fastest way to convert BED to GTF/GFF with gene_ids?
by
cmdcolin
★
3.4k
thanks for making these great tools
Traffic: 1517 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6