updated 9 days ago by
Sofia
•
0
•
written 9 days ago by
mawigoj318
•
0
0
votes
1
reply
170
views
0
votes
0
replies
149
views
9 days ago by
salias
•
0
0
votes
5
replies
366
views
updated 6 days ago by
Istvan Albert
100k
•
written 9 days ago by
sehriban.buyukkilic
▴
10
0
votes
0
replies
128
views
updated 9 days ago by
Ram
43k
•
written 9 days ago by
newuser2024
•
0
1
vote
2
replies
247
views
8 days ago by
ahmad.sajad4541
•
0
0
votes
0
replies
118
views
0
votes
1
reply
165
views
updated 9 days ago by
Mensur Dlakic
★
27k
•
written 9 days ago by
benguyarenbeyaz98
•
0
2
votes
2
replies
295
views
updated 9 days ago by
Ram
43k
•
written 9 days ago by
v.berriosfarias
▴
140
2
votes
9
replies
874
views
0
votes
11
replies
586
views
0
votes
1
reply
179
views
updated 9 days ago by
bk11
★
2.4k
•
written 10 days ago by
alphaflylizard
•
0
0
votes
0
replies
104
views
10 days ago by
ohtang7
▴
40
0
votes
1
reply
178
views
0
votes
5
replies
358
views
0
votes
0
replies
100
views
0
votes
0
replies
110
views
1
vote
3
replies
251
views
1
vote
3
replies
296
views
9 days ago by
Art1ess
•
0
0
votes
1
reply
172
views
updated 10 days ago by
bk11
★
2.4k
•
written 10 days ago by
Susmita Mandal
▴
110
1
vote
1
reply
186
views
0
votes
0
replies
98
views
0
votes
1
reply
154
views
updated 10 days ago by
Ram
43k
•
written 10 days ago by
Cameron.walker9900
•
0
0
votes
8
replies
373
views
0
votes
0
replies
114
views
updated 10 days ago by
Ram
43k
•
written 10 days ago by
maxime.policarpo
▴
200
0
votes
0
replies
101
views
0
votes
0
replies
104
views
0
votes
0
replies
210
views
1
vote
3
replies
2.5k
views
updated 10 days ago by
chrchang523
10k
•
written 6.2 years ago by
Ginevra
▴
10
1
vote
8
replies
452
views
3 days ago by
marco.barr
▴
90
0
votes
1
reply
146
views
0
votes
10
replies
498
views
0
votes
1
reply
137
views
0
votes
0
replies
93
views
11 days ago by
manaswwm
▴
510
0
votes
0
replies
83
views
0
votes
0
replies
90
views
2
votes
4
replies
321
views
0
votes
0
replies
89
views
11 days ago by
Gerard
•
0
0
votes
1
reply
172
views
0
votes
0
replies
80
views
11 days ago by
kl
▴
10
0
votes
0
replies
100
views
11 days ago by
Enrique
•
0
0
votes
0
replies
81
views
11 days ago by
sativus
▴
20
0
votes
0
replies
87
views
0
votes
0
replies
141
views
updated 11 days ago by
Carlo Yague
8.7k
•
written 11 days ago by
Atul K.
•
0
2
votes
5
replies
483
views
0
votes
0
replies
145
views
updated 12 days ago by
Ram
43k
•
written 12 days ago by
sainavyav22
•
0
0
votes
0
replies
150
views
0
votes
0
replies
140
views
0
votes
2
replies
289
views
updated 12 days ago by
Ram
43k
•
written 13 days ago by
Matteo Ungaro
▴
100
1
vote
0
replies
553
views
0
votes
0
replies
233
views
Recent Votes
Recent Locations •
All
UCLA, just now
United States, 3 minutes ago
United States, 3 minutes ago
United States, 6 minutes ago
United States, 6 minutes ago
Norway, 7 minutes ago
Canada, 8 minutes ago
Recent Awards •
All
Popular Question to
curious
▴
750
Popular Question to
M.
▴
30
Student to
carolofharvest
▴
30
Commentator to
e.r.zakiev
▴
210
Recent Replies
Comment: Easy way to find out which allele is minor allele from bed file?
by
curious
▴
750
According to the link:
"When *generating* such filesets, PLINK 1.x defaults to swapping the alleles whenever A1's frequency is above (not …
Comment: TaxID mapping file
by
GenoMax
142k
nodesDB file should have been installed if you had used "Install" script for `blobtools` according to : https://blobtools.readme.io/docs/ta…
Comment: Parametric or non-parametric tests for qPCR significance testing between treatme
by
e.r.zakiev
▴
210
obviously if the values are really sampled from a (quasi) normally-distributed values, then n doesn't matter, he could use t-test even with…
Comment: Converting CRAM to FastQ
by
GenoMax
142k
You can use any reference that you like at this point. Since you are planning to use GATK, you can get their version from the resource bund…
Comment: Converting CRAM to FastQ
by
Maverick
▴
10
![enter image description here][1]I was able to get my fastq files. I can see that my reference files are cached in a hts-ref directory but…
Comment: Differential Expression Analysis using DESeq2 in R
by
swbarnes2
14k
Okay, that shows us the problem, but not what we need to solve it.
But, for instance, are you sure that period after the sample name shou…
Comment: Easy way to find out which allele is minor allele from bed file?
by
bk11
★
2.4k
In the case of MAF = 0.5, I think A1 is still the minor allele. You can check the discussion in this [link][1].
[1]: https://groups.goo…
Comment: Easy way to find out which allele is minor allele from bed file?
by
curious
▴
750
Yes, but I think the problem is what to do when MAF = 0.5
Answer: Easy way to find out which allele is minor allele from bed file?
by
bk11
★
2.4k
In Plink, A1 is usually a minor allele and A2 a major allele.
.frq (basic allele frequency report)
Produced by --freq.
…
Comment: Raw counts using stringtie
by
GenoMax
142k
> Error parsing strand from GFF line
Looking at this error and the listing of files in your directory it looks like you need to `gunzip` t…
Comment: High Malat-1 expression in single cell data
by
dsull
★
6.0k
I briefly looked at those genes on a genome browser -- there are a lot of repeat elements in those genes, meaning a lot of counts assigned …
Comment: High Malat-1 expression in single cell data
by
carolofharvest
▴
30
Thank you for sharing.
What are your thoughts on the genes Gm42418, AY036118, and Gm26917? Some articles suggest that clusters with an abu…
Comment: Do I need to go back and filter my long-reads?
by
GenoMax
142k
> I think I will filter the reads ultimately.
If your data was not run and basecalled using the same exact version of pore/software for a…
Comment: Raw counts using stringtie
by
Ram
43k
What is `stringie.sh`? Try `./stringtie.sh -h` and then `more stringtie.sh`.
Traffic: 2270 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6