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1,000 results • Page
4 of 20
Sort: Votes
Rank
Views
Votes
Replies
4
votes
8
replies
1.8k
views
Error while running nf-core/rnaseq pipeline
nf-core
RNA-seq
11 months ago by
eesha28112001
• 0
4
votes
6
replies
2.7k
views
Convert Nanopore Fast5 files to Fasta format
fast5
fasta
Nanopore
11 months ago by
Sowmya Pulapet
▴ 70
4
votes
5
replies
1.2k
views
STAR mapping - regarding output files content
STAR
RNA-seq
mapping
updated 9 months ago by
rfran010
▴ 900 • written 9 months ago by
Manko47
• 0
4
votes
14
replies
2.7k
views
Is it possible to annotate single genes by snpeff
snp
vcf
updated 10 months ago by
Ram
43k • written 6.7 years ago by
misbahabas
▴ 70
4
votes
9
replies
1.3k
views
Snakemake issue with wrappers
Python
Snakemake
6 months ago by
Begonia_pavonina
▴ 150
4
votes
6
replies
870
views
bwa mem hangs after a few thousand reads
bwa
alignment
variant-calling
bwa-mem
updated 6 weeks ago by
Ram
43k • written 5 months ago by
cee28
▴ 30
4
votes
7
replies
820
views
Help with weighted nearest neighbor analysis
seurat
single-cell
8 months ago by
Chris
▴ 280
4
votes
6
replies
660
views
Unexpected separation of RNA-seq samples on PCA plot
depletion
PCA
rRNA
plot
RNA-seq
5 months ago by
Tihana
▴ 10
4
votes
11
replies
693
views
Remove X in row name with only number
GSVA
updated 3 months ago by
Ram
43k • written 3 months ago by
Chris
▴ 280
4
votes
4
replies
382
views
Average expression of a sample in single-cell data
single-cell
rna-seq
6 weeks ago by
newuser2024
• 0
4
votes
3
replies
506
views
Parsing columns with awk
awk
updated 6 months ago by
Ram
43k • written 6 months ago by
pablo
▴ 300
4
votes
8
replies
3.5k
views
How to reduce the number of SNPs for the Lositan software
Lositan
SNP
updated 10 months ago by
Ram
43k • written 9.6 years ago by
zhaojianli198322
• 0
4
votes
5
replies
1.2k
views
tranfering sam file easy and fast way
SAM
RNA-seq
hisat2
updated 8 months ago by
Ram
43k • written 2.4 years ago by
iamsmor
• 0
4
votes
6
replies
962
views
Open-Source software. Good or bad for the market?
genomic-analysis
software
updated 12 months ago by
Ram
43k • written 6.2 years ago by
Bioinformatician90
• 0
4
votes
12
replies
7.8k
views
6 follow
BWA error: no ID within the read group line
bwa
readgroups
RG
parallel
updated 3 months ago by
mgdrnl
▴ 10 • written 3.4 years ago by
whb
▴ 60
4
votes
9
replies
1.1k
views
bcl2fastq troubleshooting all reads dumped to "Undetermined"
demultiplex
illumina
sequencing
updated 4 months ago by
GenoMax
142k • written 5 months ago by
MaxF
▴ 120
4
votes
7
replies
788
views
Alternative for grep in a for loop
linux
updated 7 months ago by
Ram
43k • written 7 months ago by
Prangan
▴ 20
4
votes
1
reply
587
views
How to Load a Molecular Signature Database into clusterProfiler gseGO?
ClusterProfiler
RNA-seq
GSEA
updated 10 months ago by
Nitin Narwade
★ 1.6k • written 10 months ago by
Manuel Sokolov Ravasqueira
▴ 100
4
votes
4
replies
672
views
Feedback on mouse brain scRNA-seq quality control
mouse
brain
singe-cell
scRNAseq
quality-control
8 months ago by
nshenoy
▴ 50
4
votes
5
replies
406
views
Filter out miRNA from ncRNA dataset
bowtie
bowtie2
miRNA
filtering
ncRNA
updated 11 weeks ago by
ATpoint
82k • written 12 weeks ago by
binaryCode
▴ 10
4
votes
5
replies
2.4k
views
Merge CNVnator output of multiple samples
CNV
WGS
updated 10 months ago by
Ram
43k • written 6.7 years ago by
zhang248
▴ 40
3
votes
3
replies
464
views
I can't add VAF from population for all of my variants from VCF file
genomics
vcf
gnomad
updated 9 weeks ago by
Ram
43k • written 9 weeks ago by
Samuel
▴ 20
3
votes
12
replies
3.1k
views
What is NCBI Gene ID, where to find it and how to convert to entrez ID?
RNA-Seq
updated 11 months ago by
Pegasus
▴ 100 • written 4.6 years ago by
mnazir
▴ 10
3
votes
1
reply
437
views
How to BLAST a FASTA sequence with unknown organism source
chrZ
BLAST
FASTA
updated 7 months ago by
Joe
21k • written 7 months ago by
Sd
• 0
3
votes
1
reply
389
views
GEO dataset Microarray data analysis help
R
microarray
NCBI
GEO
updated 5 months ago by
Ram
43k • written 5 months ago by
Confused_human
▴ 20
3
votes
26
replies
2.0k
views
6 follow
STAR Genome index Error
STAR
updated 7 months ago by
Ram
43k • written 7 months ago by
Prasanna
• 0
3
votes
2
replies
4.8k
views
How to plot a circular clustered heatmap with dendrogram
circular heatmap
updated 9 months ago by
logbio
▴ 30 • written 4.5 years ago by
The
▴ 180
3
votes
6
replies
865
views
Read multiple vcf files into R
R
vcf
6 months ago by
sousapaulo16
▴ 20
3
votes
7
replies
535
views
How does kallisto handle multi mapped reads?
kallisto
updated 11 weeks ago by
dsull
★ 6.0k • written 11 weeks ago by
bioinfo
▴ 150
3
votes
3
replies
347
views
learning bioinformatics
course
learning
updated 3 months ago by
Ram
43k • written 3 months ago by
sevda
• 0
3
votes
5
replies
1.2k
views
kraken2 bacteria database 250GB+
metagenomics
16s
kraken2
kraken
updated 6 months ago by
GenoMax
142k • written 6 months ago by
10mz1
▴ 10
3
votes
5
replies
1.1k
views
I have a pair of read files where each is a mixed pool of reads from the Linked-read technology and Illumina short-read technology. Any suggestion on…
NGS
clc-genomics
illumina
WGS
updated 7 months ago by
Ram
43k • written 7 months ago by
Vijith
▴ 30
3
votes
8
replies
560
views
How to access TCGA samples that were treated with a specific drug?
TCGA
RNA-seq
8 days ago by
Qroid
▴ 40
3
votes
1
reply
291
views
how to change the gene header names in a fasta file?
fasta
bioawk
awk
seqkit
updated 4 weeks ago by
Ram
43k • written 4 weeks ago by
rj.rezwan
• 0
3
votes
14
replies
6.0k
views
remote command line BLAST job ends in CPU error and gives MBEDTLS version mismatch
blastn
mbedtls
blast
linux
blast+
updated 3 months ago by
K.Gee
▴ 40 • written 3.1 years ago by
janneken0210
• 0
3
votes
6
replies
768
views
No genes mapped in clusterprofiler gseGO
R
clusterProfiler
gseGO
GSEA
4 months ago by
jon50250
• 0
3
votes
4
replies
667
views
Weighted analysis
RNA-seq
7 months ago by
Peter
• 0
3
votes
6
replies
2.1k
views
Biopython TimeExceptionError how to handle?
biopython
entrez
updated 12 months ago by
Ram
43k • written 6.5 years ago by
Xylanaser
▴ 80
3
votes
6
replies
2.5k
views
How to adjust by multiple variables using ComBat-Seq?
CombatSeq
combat
rna-seq
sva
batch-effect
updated 28 days ago by
Ram
43k • written 21 months ago by
ev97
▴ 20
3
votes
2
replies
169
views
Publish a Letter in higher impact vs Research article in lower impact
Article
Letter
Journal
updated 1 day ago by
ATpoint
82k • written 1 day ago by
jennyp0706
• 0
3
votes
3
replies
614
views
How do mRNASeq, BulkRNASeq, and TotalRNASeq differ in terms of workflow?
RNA-Seq
updated 7 months ago by
Ram
43k • written 7 months ago by
manish.nu
• 0
3
votes
3
replies
528
views
How to add value of column to barchart on hover?
R
ggplot
ggplotLy
updated 8 months ago by
Trivas
★ 1.8k • written 8 months ago by
Manuel
▴ 10
3
votes
3
replies
506
views
How to proceed after Kraken2 analysis
rnaseq
kraken
updated 6 months ago by
dthorbur
★ 2.0k • written 6 months ago by
pixie@bioinfo
★ 1.5k
3
votes
4
replies
745
views
During alignment STAR has stopped at started alignment step
STAR
updated 7 months ago by
Ram
43k • written 9 months ago by
Santhi
• 0
3
votes
9
replies
998
views
Estimate sizes of repeats in a especific Gene
CGG
Fragile-X
12 months ago by
Rafael
▴ 10
3
votes
5
replies
1.5k
views
Uniprot API access to download .pdb files
PDB
API
Python
Uniprot
11 months ago by
BioGrad321
• 0
3
votes
4
replies
305
views
Truncated metadata file report from ENA Portal API
ena
python
4 days ago by
Giulia
• 0
3
votes
2
replies
1.2k
views
DESeq2 design and Batch effects
RNA-Seq
batch-effect
DESeq2
updated 27 days ago by
Ram
43k • written 4.5 years ago by
baldissera152
▴ 10
3
votes
8
replies
6.6k
views
7 follow
GATK genomicsDBimport intervals for WGS
gatk
genomicsdbimport
updated 12 days ago by
Sd
• 0 • written 5.1 years ago by
Nicolas Rosewick
11k
3
votes
8
replies
649
views
Huge decrease of BUS records using bustools
single-cell
bustools
10X
11 weeks ago by
julien.wollbrett
• 0
1,000 results • Page
4 of 20
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