0
votes
0
replies
16
views
0
votes
0
replies
65
views
0
votes
0
replies
65
views
0
votes
0
replies
101
views
1
vote
4
replies
191
views
0
votes
1
reply
140
views
0
votes
0
replies
113
views
22 hours ago by
zijian
•
0
0
votes
1
reply
131
views
0
votes
0
replies
136
views
0
votes
0
replies
139
views
0
votes
1
reply
166
views
0
votes
0
replies
134
views
1
vote
0
replies
138
views
0
votes
2
replies
239
views
0
votes
0
replies
140
views
0
votes
4
replies
368
views
15 hours ago by
Utpal
•
0
0
votes
0
replies
142
views
22 hours ago by
Leite
★
1.2k
0
votes
1
reply
214
views
0
votes
2
replies
237
views
0
votes
2
replies
211
views
1
vote
3
replies
995
views
0
votes
2
replies
243
views
2 days ago by
ugur
•
0
0
votes
0
replies
137
views
1
vote
0
replies
129
views
2 days ago by
barrypraveen
▴
110
0
votes
0
replies
138
views
2 days ago by
farzaneafzali
▴
70
0
votes
0
replies
125
views
updated 2 days ago by
Pierre Lindenbaum
153k
•
written 2 days ago by
shreshta2396
•
0
0
votes
0
replies
120
views
2 days ago by
parrasevilla.bioinfo
•
0
0
votes
1
reply
207
views
updated 2 days ago by
jv
★
1.0k
•
written 2 days ago by
Omics data mining
▴
210
1
vote
2
replies
260
views
0
votes
0
replies
173
views
0
votes
2
replies
208
views
3 days ago by
brandnewatthis
•
0
0
votes
0
replies
208
views
0
votes
1
reply
176
views
0
votes
0
replies
131
views
0
votes
0
replies
115
views
3 days ago by
biomarco
▴
20
0
votes
0
replies
118
views
2
votes
6
replies
312
views
updated 3 days ago by
Ram
38k
•
written 3 days ago by
abdelmalek.benmeziane
•
0
0
votes
1
reply
137
views
updated 3 days ago by
Mensur Dlakic
★
23k
•
written 3 days ago by
Fathima
•
0
0
votes
1
reply
148
views
0
votes
0
replies
109
views
3
votes
2
replies
210
views
4 days ago by
rene.j.erhardt
▴
20
1
vote
2
replies
215
views
2
votes
4
replies
240
views
0
votes
0
replies
117
views
0
votes
0
replies
127
views
updated 4 days ago by
Ram
38k
•
written 4 days ago by
npavliukovec
•
0
0
votes
0
replies
103
views
2
votes
12
replies
523
views
0
votes
0
replies
103
views
4 days ago by
Lakshmi
▴
10
0
votes
0
replies
100
views
Recent Locations •
All
India, just now
India, 1 minute ago
Italy, 2 minutes ago
Spain, 3 minutes ago
United Kingdom, 3 minutes ago
Germany, 5 minutes ago
United States, 6 minutes ago
Recent Awards •
All
Popular Question to
Lluís R.
★
1.2k
Popular Question to
sharmatina189059
▴
110
Popular Question to
ahnje770
▴
20
Popular Question to
Gjain
5.7k
Popular Question to
mark.rose
▴
50
Popular Question to
prabin.dm
▴
260
Recent Replies
Answer: getTable ignores query ranges
by
Kyle
•
0
The short answer is you can theoretically do this you just need to a) make your SNPs are two base-pairs in length (i.e. add 1 to the end) a…
Answer: Installing rlang version 1.1.0
by
Lluís R.
★
1.2k
Having a package duplicated means they are at a different `.libPaths()` sites. Check which version is in which directory and directly remov…
Answer: Somatic truth set
by
samuel
▴
180
I think I have found an naswer to my own question.
Should anyone have the same question as of March 2023 the relevant data and information…
Answer: GetBM - GERP conservation score for GRCm39
by
Kyle
•
0
Final solution thanks to Ben's help::
# convert df to Grange.
snp_gr <-makeGRangesFromDataFrame(BM_SNPs, seqnames.field = "seqnam…
Answer: MapSplice2 gives error if the thread count (-p value) is greater than 2
by
vishal.koparde
▴
10
Any updates??
Comment: how to know what adapter sequences to trim for RNA-seq?
by
lunarskye222
•
0
Do you happen to know if the middle part of this udi barcode (GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCTACATATCTCG) is also part of the TruSeq a…
Comment: Hard clip fastq
by
GenoMax
127k
If you simply want the reads to be compatible in length then do not adapter trim.
Comment: Hard clip fastq
by
samuel
▴
180
@ATpoint, so no adapter trimming first? Just trim the raw fastq?
Answer: Confused on strandedness, what are antisense transcripts?
by
dsull
★
4.0k
Think of it on the DNA level: If the mRNA made is the same sequence as the "sense" DNA strand (except U's instead of T's), it is a "sense" …
Comment: Protein name in GenBank
by
GenoMax
127k
If you must do this programmatically then collect all cases where things differ in order of words (or number of words) like the example abo…
Answer: Hard clip fastq
by
GenoMax
127k
You can also use `reformat.sh` from [**BBMap suite**][1] as follows
reformat.sh -Xmx2g in1=R1.fq.gz in2=R2.fq.gz out1=R1_trim.fq.gz …
Answer: Hard clip fastq
by
ATpoint
70k
Use `seqtk trimfq`. It makes sense to trim first to your desired length and then run identical downstream processing for a fair comparison.…
Comment: Protein name in GenBank
by
Mensur Dlakic
★
23k
I think you either take time to do it properly, or you will end up missing some proteins. BLAST sequence search, even on 1500 genomes, can …
Comment: Log2 FC Threshold
by
ATpoint
70k
Since OP is using GEO2R which uses limma the appropriate function (need to run manually, GEO2R does not support) is `limma::treat()` rather…
Traffic: 1934 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6