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484 results • Page
3 of 10
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Views
Votes
Replies
0
votes
1
reply
754
views
Low SNP Overlap with Michigan 1KG and TopMed reference panel
Michigan-Server
Phasing
TopMed
updated 26 days ago by
Ram
43k • written 12 months ago by
berndmann
▴ 10
0
votes
0
replies
734
views
Creating a stable batch-corrected scRNA-Seq data with multiple datasets and multiple integrations
RNA-Seq
scRNA-Seq
batch-effect
updated 10 days ago by
Ram
43k • written 3.4 years ago by
hkarakurt
▴ 180
0
votes
0
replies
734
views
"No group or design set" with deAna() function in EnrichmentBrowser package
RNA-Seq
R
EnrichmentBrowser
updated 11 days ago by
Ram
43k • written 4.1 years ago by
yxswhx
• 0
8
votes
10
replies
720
views
bash script
whole-genome-sequencing
updated 13 days ago by
Ram
43k • written 20 days ago by
bestone
▴ 30
2
votes
5
replies
700
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 8 days ago by
Jesse
▴ 740 • written 9 days ago by
Ann
★ 2.4k
1
vote
0
replies
675
views
Conditions for valid batch effect correction
r
batch-effect
updated 11 days ago by
Ram
43k • written 5.2 years ago by
Sebastian Hesse
▴ 340
2
votes
5
replies
673
views
samtools mpileup taking too long
Bam
samtools
sam
alignment
updated 23 days ago by
Ram
43k • written 6 weeks ago by
K
• 0
1
vote
1
reply
660
views
Save experiment with batch effects - Protein microarray
statistics
protein-array
batch-effect
updated 11 days ago by
Ram
43k • written 4.4 years ago by
s.lima.diogenes
▴ 10
0
votes
1
reply
658
views
How to fix FreeBayes error "unable to find FASTA index entry for bed files"
freebayes
variant-calling
RNA-Seq
updated 26 days ago by
Ram
43k • written 13 months ago by
wlei091226
• 0
0
votes
1
reply
657
views
How to find the co ordinates of long reads (simulated by Badreads) with respect to the reference genome
long-reads
reference-genome
assembly
updated 23 days ago by
Ram
43k • written 2.7 years ago by
Ashi
▴ 20
0
votes
0
replies
650
views
METAL GWAS
allele-frequency
gwas
updated 26 days ago by
Ram
43k • written 2.4 years ago by
晗颖
• 0
0
votes
10
replies
640
views
Nextflow ERROR : Timeout waiting for connection from pool
nextflow
27 days ago by
dzisis1986
▴ 70
2
votes
6
replies
640
views
Overlapping and merging ChIP-seq peaks
MACS2
HOMER
ChIP-seq
peak-calling
updated 26 days ago by
Ram
43k • written 4 months ago by
zea
• 0
2
votes
2
replies
631
views
Batch correction for DE analysis
batch-correction
mRNA
RNA-seq
DEGs
MDSplot
updated 11 days ago by
Ram
43k • written 2.6 years ago by
Yoonji
▴ 10
0
votes
2
replies
625
views
Seeking Alternative Tools for Predicting Mature microRNAs from Vertebrate Animal Precursors in In Silico Study
mirdeep2
maturebayes
microrna
updated 26 days ago by
Ram
43k • written 12 months ago by
Beatriz
• 0
0
votes
3
replies
624
views
Not all variants are annotated with AF - expected or a problem?
Variant-Calling
WGS
Alignment
updated 26 days ago by
Ram
43k • written 7 months ago by
Luiz
▴ 30
0
votes
0
replies
623
views
I performed Homer's annotatePeaks.pl on multiple tissues, yet when I run annotatePeaks on the merged tissues, I get fewer total annotated peaks. Is t…
Homer
ATACseq
29 days ago by
Ronin
• 0
0
votes
6
replies
616
views
Best practices for differential expression analysis with low-yield Nanopore/ONT direct cDNA data?
differential-expression
RNA-Seq
ONT
Nanopore
updated 19 days ago by
Ram
43k • written 5 months ago by
tw_140
• 0
1
vote
1
reply
599
views
accessing the global gut microbial gene catalogue (MEDUSA)
medusa
gene-catalogue
gut-microbiome
updated 17 days ago by
Ram
43k • written 3.2 years ago by
ramin.k2013
• 0
0
votes
9
replies
596
views
99.9999% of Q30 bases is normal?
RNA-seq
fastp
updated 16 days ago by
LauferVA
4.2k • written 18 days ago by
Aki
▴ 20
0
votes
0
replies
593
views
Avoid genome circularization with Canu assembler
circularization
ONT
Canu
repetitive-regions
assembler
updated 23 days ago by
Ram
43k • written 2.9 years ago by
Maria
• 0
0
votes
4
replies
588
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
9 days ago by
Kai Xin
• 0
4
votes
9
replies
580
views
variant calling
variant-calling
updated 25 days ago by
Ram
43k • written 26 days ago by
dalibenam64
• 0
0
votes
2
replies
579
views
Bacterial contamination in human DNA sample
Long-read-sequencing
Bacterial-contamination
updated 23 days ago by
Ram
43k • written 22 months ago by
priya.bmg
▴ 60
4
votes
7
replies
574
views
Can any JBrowse2 tracks show multiple colors for reads at different nucleotide positions?
JBrowse
JBrowse2
updated 26 days ago by
cmdcolin
★ 3.8k • written 4 weeks ago by
I0110
▴ 140
4
votes
7
replies
562
views
DESeq2 Multifactor Design
RNA-seq
DESeq2
updated 15 days ago by
Ram
43k • written 16 days ago by
AHerik
▴ 20
3
votes
12
replies
560
views
struggle to get fasta files from ucsc goldenPath
ucsc
getfasta
fasta
26 days ago by
Lila M
★ 1.2k
0
votes
6
replies
557
views
PacBio adapters in transcriptome assembly from short read data?
adapter
transcriptome
sequencing
pacbio
vecscreen
13 days ago by
Dunois
★ 2.5k
0
votes
1
reply
553
views
Differential Expression Analysis for miRNA
limma
Differential-gene-Expression
miRNA
updated 19 days ago by
Ram
43k • written 2.9 years ago by
Al
• 0
0
votes
5
replies
545
views
seg fault, core dumped with manta 1.6.0
manta
gdb
updated 20 days ago by
Ram
43k • written 23 days ago by
Greg
• 0
1
vote
0
replies
544
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers
TRINITY
8 days ago by
mathavanbioinfo
▴ 90
0
votes
2
replies
542
views
autodockvina
python
python3
autodock
updated 10 days ago by
Ram
43k • written 4 months ago by
iamsmor
• 0
0
votes
2
replies
542
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
9 days ago by
航太郎
• 0
1
vote
1
reply
540
views
GEO analysis with R
R
updated 26 days ago by
Ram
43k • written 2.3 years ago by
abdalla.m
• 0
0
votes
11
replies
520
views
How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq libraries?
STARSolo
scRNA-seq
STAR
snRNA-seq
MGI
2 days ago by
atowns21
• 0
0
votes
1
reply
518
views
Geneious vs Perl script of IN SILICO PCR
PCR
Geneious
updated 26 days ago by
Ram
43k • written 23 months ago by
Bio_Crap
• 0
0
votes
2
replies
513
views
Gene expression assay Yeast sample prep
Live-cells
updated 26 days ago by
Ram
43k • written 22 months ago by
dshdixit
▴ 10
0
votes
4
replies
512
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
10 days ago by
feather-W
• 0
0
votes
5
replies
495
views
How to assure that sequence consensus is genuine?
genome
22 days ago by
marongiu.luigi
▴ 710
1
vote
1
reply
480
views
Manta: What does all this mean
manta
Variant-calling
VEP
updated 26 days ago by
Ram
43k • written 9 months ago by
josh.mannheimer
• 0
3
votes
3
replies
480
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 8 days ago by
swbarnes2
14k • written 9 days ago by
noodle
▴ 530
0
votes
0
replies
476
views
How to map Uniref90 genes (IDs) to Antibiotic resistant genes databases?
CARD
metagenomics
Humann2
antibiotic-resistant-genes
uniref
updated 17 days ago by
Ram
43k • written 2.0 years ago by
ramin.k2013
• 0
0
votes
1
reply
476
views
GAPIT p-value significance threshold
GAPIT
p-value
GWAS
updated 3 days ago by
ginellegrenier
• 0 • written 4 months ago by
Clayton
• 0
2
votes
5
replies
470
views
Where to find the homopolymer regions bed file for Hg002 genome?
simple-repeats
hg002
bed
homopolymer-regions
11 days ago by
Bikram Kumar
• 0
0
votes
6
replies
466
views
Error in running Mauve alignner in Ubuntu 20.04
java
linux
aligner
mauve
18 days ago by
marongiu.luigi
▴ 710
1
vote
1
reply
466
views
PLINK multivariable GLM output: p-value without BETA and SE
linear-model
glm
plink
updated 20 days ago by
chrchang523
10k • written 20 days ago by
dsbusiness135
▴ 10
2
votes
5
replies
459
views
Marking duplicates using UMIs
Deduplication
UMI
updated 6 days ago by
i.sudbery
19k • written 7 days ago by
Lipika
• 0
0
votes
1
reply
456
views
principal coordinate analysis
PCoA
R
updated 26 days ago by
Ram
43k • written 10 months ago by
rene.j.erhardt
▴ 20
0
votes
0
replies
449
views
Tools for identifying trans-splicing from long read data
long-read
splicing
nanopore
trans-splicing
updated 23 days ago by
Ram
43k • written 14 months ago by
dthorbur
★ 1.9k
0
votes
6
replies
442
views
Use of Kraken output for functional analysis
metagenomics
kraken
shotgun
updated 4 days ago by
gv
• 0 • written 27 days ago by
Srinka
▴ 20
484 results • Page
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Answer: NGS forensics: how to know if data is fabricated
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Answer: NGS forensics: how to know if data is fabricated
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Comment: PDB related issue
by
Mensur Dlakic
★ 27k
The best way to find out is to read the original paper. My guess is that the residue has been crystallized in alternative conformations, wh…
Answer: NGS forensics: how to know if data is fabricated
by
Mensur Dlakic
★ 27k
I share the opinion by @philippbayer I have seen enough questionable things in life and in science to keep me permanently jaded, but there…
Comment: How many reads for WGS Sequencing?
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★ 27k
I downloaded the data in two files from the link you provided. With this command: megahit -1 ERR072246_1.fastq.gz -2 ERR072246_2.fastq…
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If you have Linux the assembly should work on your system, but 8 GB is generally not enough for assembling larger genomes.
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I think you might be getting stuck on less relevant parts of my exercise. The most important point was that nothing is wrong with the data.…
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Hi @fe3e6f65 , In a single sentence, the answer to your question can be summarized as, "*the resolution of a genomic technology refers to …
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Without more context, we cannot interpret this PCA plot. There are many possibilities. In addition, this question is basic enough that it w…
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i have the name ready: out**liar**
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Not as convenient but the entire set of full alignments can be downloaded here: https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pf…
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