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212 results • Page
1 of 5
Sort: Votes
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Views
Votes
Replies
7
votes
7
replies
507
views
Nextflow rnaseq finishing early
RNA-seq
nextflow
updated 1 day ago by
Ram
38k • written 1 day ago by
Raygozak
★ 1.4k
7
votes
16
replies
2.0k
views
Insert size selection for RNASeq data: does it make sense?
RNA-Seq
sequencing
updated 2 days ago by
Ram
38k • written 5.5 years ago by
Matteo Schiavinato
★ 3.6k
6
votes
7
replies
4.4k
views
Creation Of A .Bed File From .Txt
plink
updated 2 days ago by
Ram
38k • written 9.2 years ago by
tom.d.brocklehurst
• 0
6
votes
7
replies
1.1k
views
The size of the genome in pb of an organism before sequencing?
sequencing
genome
updated 2 days ago by
Ram
38k • written 4.4 years ago by
irg21
• 0
5
votes
6
replies
3.0k
views
Changes log2FC values of DESeq2
log2FC
DESeq2
updated 6 days ago by
Ram
38k • written 5.3 years ago by
realnewbie
▴ 30
5
votes
4
replies
1.7k
views
MyVariant.info fields descriptions?
genome
snp
variant
updated 6 days ago by
Ram
38k • written 6.9 years ago by
Nolwenn Lavielle
▴ 90
4
votes
3
replies
197
views
Geom bar postive and negative values in a flipped plot
flip_coord
ggplot
geom_bar
6 days ago by
luzglongoria
▴ 40
4
votes
1
reply
2.9k
views
How Do I Get A Gff Files Or Make My Own For A Bacteriophage?
gtf
gff
updated 2 days ago by
Ram
38k • written 10.0 years ago by
joaslucas
▴ 90
3
votes
4
replies
339
views
How much reads per cell for fusion detection with Nanopore ?
single-cell
fusion
nanopore
6 days ago by
Evan
▴ 180
3
votes
1
reply
2.3k
views
Noncoding Rna Mapping
non-coding-RNA
updated 2 days ago by
Ram
38k • written 9.8 years ago by
Honey
▴ 200
3
votes
1
reply
90
views
Why not use ONLY promoter-bound peaks when testing for enrichment in differentially-bound regions?
ChIP-seq
ChIPseeker
GO
updated 10 hours ago by
Ram
38k • written 12 hours ago by
e.r.zakiev
▴ 30
3
votes
4
replies
3.5k
views
How Can I Extract All The Read Pairs In A Region From Bam File ?
bam
updated 2 days ago by
Ram
38k • written 9.9 years ago by
siyu
▴ 150
3
votes
2
replies
224
views
correlations in R
cor
R
6 days ago by
rene.j.erhardt
▴ 20
2
votes
4
replies
252
views
Error with a function in ATAC-seq analysis
ATAC-seq
6 days ago by
Chris
▴ 70
2
votes
4
replies
360
views
FeatureCounts >edgeR > GO
RNA-SEQ
12 hours ago by
Pegasus
▴ 80
2
votes
12
replies
551
views
how to get to a VCF from bam files
Mpileup
Samtools
BAM
bcftools
VCF
updated 5 days ago by
Ram
38k • written 7 days ago by
Human
• 0
2
votes
2
replies
136
views
STAR solo set parameters for scrna-seq
solo
STAR
18 hours ago by
t.ru
▴ 20
2
votes
3
replies
220
views
RNAseq: same reads + more complete scaffold = fewer DEGs?
RNAseq
updated 6 days ago by
Darked89
4.2k • written 7 days ago by
phillip.brassington
▴ 10
2
votes
8
replies
9.1k
views
Size of typical genomic data
genomic
updated 2 days ago by
Ram
38k • written 4.9 years ago by
Nicolas Rosewick
10k
2
votes
0
replies
490
views
3D distance between two chromosomal coordinates in 3D human genome?
3d
hi-C
genome
chia-pet
updated 6 days ago by
Ram
38k • written 2.0 years ago by
robert.mclaughlin
▴ 20
2
votes
1
reply
2.1k
views
Question about PLINK allelic scoring (PRS)
plink
PRS
updated 13 hours ago by
Ram
38k • written 4.6 years ago by
wonseok.cchoi
• 0
2
votes
6
replies
317
views
bioinformatics problems solved by graphs data structure
Graph
algorithm
data-structure
updated 6 days ago by
Ram
38k • written 6 days ago by
abdelmalek.benmeziane
• 0
2
votes
3
replies
421
views
Genomics regions that common to atleast 10 cell types
bedtools
bedops
genome
bed
sequence
updated 6 days ago by
Ram
38k • written 2.8 years ago by
rohitsatyam102
▴ 690
1
vote
3
replies
1.0k
views
LncTar error
LncRNA
LncTar
mRNA
updated 5 days ago by
Ram
38k • written 2.1 years ago by
kuntalasb
▴ 10
1
vote
1
reply
1.5k
views
download same sample data sequenced on different platforms.
fastq
platform
updated 5 days ago by
Ram
38k • written 6.8 years ago by
lakhujanivijay
5.7k
1
vote
7
replies
1.1k
views
Bulk download tomato RNA or cDNA sequences (partial) with genomic loci list
SGN
tomato
updated 6 days ago by
Ram
38k • written 5.0 years ago by
donger1103
▴ 10
1
vote
0
replies
133
views
How to calculate Exon-Intron junction perbase coverage?
RNA-Seq
bedtools
5 days ago by
barrypraveen
▴ 110
1
vote
0
replies
164
views
Minimap2 giving opposite strand orientation than Pychopper
nanopore
Pychopper
Minimap2
4 days ago by
vanda.gaonach-lovejoy
▴ 10
1
vote
0
replies
378
views
Single Cell Portal: Download troubles using curl
single-cell-portal
updated 6 days ago by
Ram
38k • written 12 months ago by
needHelpWkeggGSEA
▴ 10
1
vote
1
reply
731
views
How to download BAM file from VM
bam
VM
updated 5 days ago by
Ram
38k • written 2.7 years ago by
nhaus
▴ 280
1
vote
1
reply
77
views
Integration of RNA seq data aligned to different reference genome versions
scRNA-seq
RNA-seq
updated 12 hours ago by
Ram
38k • written 13 hours ago by
susibing
▴ 20
1
vote
1
reply
243
views
Libraries with different size in the same MiniSeq cartridge
Illumina
MiniSeq
UMI
updated 2 days ago by
Ram
38k • written 11 months ago by
MH85
• 0
1
vote
3
replies
155
views
mpileup to sync file
AF
samtools
selection
vcf
popoolation
updated 20 hours ago by
Pierre Lindenbaum
153k • written 20 hours ago by
qstefano
▴ 20
1
vote
2
replies
933
views
Downloading 1000genome phase 3 data in 38 build
1000genomes
updated 6 days ago by
Ram
38k • written 2.1 years ago by
AVA
▴ 40
1
vote
2
replies
226
views
Weird looking dispersion & MA plot?
deseq2
RNA-seq
updated 6 days ago by
Ram
38k • written 7 days ago by
Neha
• 0
1
vote
2
replies
4.3k
views
Isfinder And Integrall Databases
metagenomics
INTEGRALL
ISFinder
BLAST
updated 5 days ago by
Ram
38k • written 9.2 years ago by
alielbehery
▴ 10
1
vote
3
replies
692
views
Problem when downloading Fastq files from ENA Database automatically with accession number
ENA
Fastq
updated 6 days ago by
Ram
38k • written 17 months ago by
ignacio.martinezdelejarza
• 0
1
vote
3
replies
343
views
SKAT in R
pvalue
skat
snp
3 days ago by
Eliza
▴ 20
1
vote
1
reply
86
views
Best way to visualize .paf or .sam alignment to a fasta file
visualization
sam
fasta
paf
alignment
updated 7 hours ago by
GenoMax
127k • written 8 hours ago by
Mark
• 0
1
vote
2
replies
106
views
Analysing the Effect of a Drug on the Morphological Changes of a Cell Type
drug-effect
statistical-analysis
6 hours ago by
E-HR
• 0
1
vote
2
replies
476
views
How we could calculate the sample size for ATAC seq and single cell RNA seq, respectively?
single-cell
ATAC-seq
updated 2 days ago by
Ram
38k • written 4 months ago by
skywalker21th
• 0
1
vote
1
reply
259
views
Downloading workgroup data from Illumina basespace with CLI
fastq
illumina
updated 6 days ago by
Ram
38k • written 3 months ago by
br
• 0
1
vote
3
replies
460
views
Using Copy Number Alterations detected in other studies for the same tumor cell line
genomes
cancer
CNV
variants
CNA
updated 6 hours ago by
lethalfang
▴ 90 • written 4 months ago by
ashenflower
▴ 20
1
vote
6
replies
954
views
problem for comparing 2 type of annotation file
gencode
RNA-Seq
TCGA
updated 6 days ago by
Zhenyu Zhang
▴ 750 • written 4.8 years ago by
modarzi
▴ 160
1
vote
2
replies
271
views
in an RNA-seq experiment, what threshold would you use to define a set of expressed or active genes in a cell line?
RNA-seq
updated 5 days ago by
i.sudbery
16k • written 6 days ago by
rls_08
▴ 40
1
vote
4
replies
257
views
Protein name in GenBank
genbank
python
biopython
updated 3 days ago by
GenoMax
127k • written 3 days ago by
Daniel
• 0
1
vote
2
replies
173
views
Snakemake doesn't recognize output files even though they are created
python
Snakemake
10 hours ago by
DdogBoss
• 0
1
vote
0
replies
137
views
List of Ongoing and Planned Long Read Sequencing studies?
long-read-sequencing
third-generation
updated 2 days ago by
Ram
38k • written 2 days ago by
Vincent Laufer
★ 2.5k
1
vote
5
replies
2.2k
views
Where can I download chromatin state genomic co-ordinates of C.elegans ?
c.elegans
chromatin-states
updated 5 days ago by
Ram
38k • written 8.4 years ago by
biorepine
★ 1.5k
1
vote
1
reply
4.0k
views
Downloading GenomeStudio on Mac
methylation-module
genome-studio
updated 5 days ago by
Ram
38k • written 4.4 years ago by
daniellemo
▴ 10
212 results • Page
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