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514 results • Page
3 of 11
Sort: Votes
Rank
Views
Votes
Replies
1
vote
1
reply
175
views
Failed to download data from EBI with ascp
EBI
aspera
updated 15 days ago by
GenoMax
141k • written 15 days ago by
biock
▴ 60
1
vote
3
replies
351
views
how to do the repeatability filtering of vcf files?
snp
vcf.
updated 25 days ago by
Pierre Lindenbaum
161k • written 26 days ago by
Max
• 0
1
vote
1
reply
2.7k
views
Plotting a PCA Plot from SVASeq results
pca
ruvseq
sva
svaseq
batch-effect
updated 9 days ago by
Ram
43k • written 6.2 years ago by
jjrin
▴ 40
1
vote
1
reply
416
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 5 days ago by
Gordon Smyth
★ 7.0k • written 8 days ago by
Chris
▴ 260
1
vote
3
replies
6.1k
views
Error for converting from gene symbol to Entrez IDs
Entrez-ID
org.Dr.eg.db
updated 9 days ago by
Ram
43k • written 5.5 years ago by
modarzi
▴ 170
1
vote
2
replies
1.9k
views
Remove batch effect from exome data
NGS
exome-sequencing
batch-effect
updated 8 days ago by
Ram
43k • written 6.6 years ago by
Alternative
▴ 270
1
vote
4
replies
280
views
Removing batch effect using combat-seq
batch
effect
RNA-Seq
combat-seq
updated 25 days ago by
BioinfGuru
★ 1.7k • written 25 days ago by
Netanel
• 0
1
vote
1
reply
462
views
PLINK multivariable GLM output: p-value without BETA and SE
linear-model
glm
plink
updated 18 days ago by
chrchang523
10k • written 18 days ago by
dsbusiness135
▴ 10
1
vote
2
replies
287
views
Tumour purity and ploidy estimation
Copy-number
Whole-exome-sequencing
10 days ago by
bp22
▴ 80
1
vote
1
reply
1.7k
views
sea corrected expression matrix
sva
microarrays
batch-effect
updated 9 days ago by
Ram
43k • written 6.8 years ago by
ATCG
▴ 380
1
vote
4
replies
2.8k
views
removing confounding batch effect with RUVseq
RUVseq
RNA-Seq
batch-effect
DESeq2
updated 9 days ago by
Ram
43k • written 5.1 years ago by
grant.hovhannisyan
★ 2.6k
1
vote
2
replies
211
views
Flow Cytometry Data Analysis by Seurat
Seurat
updated 29 days ago by
Ram
43k • written 29 days ago by
gdfsnkfns
• 0
1
vote
4
replies
2.4k
views
Batch effect control in GWAS data.
Batch-effect
omniexpress
GWAS
GSA
updated 9 days ago by
Ram
43k • written 4.8 years ago by
saksis.rihards
▴ 10
1
vote
5
replies
272
views
Downsampling fastq file
downsample
fastq
updated 4 days ago by
Ram
43k • written 4 days ago by
marco.barr
▴ 80
1
vote
2
replies
808
views
What type of normalization does removeBatchEffect function require as the input?
batch
limma
removeBatchEffect
rna-seq
batch-effect
updated 10 days ago by
Ram
43k • written 21 months ago by
ev97
▴ 20
1
vote
1
reply
225
views
Retrieve a % coverage for each transcript
RNA-seq
updated 9 days ago by
Ram
43k • written 9 days ago by
jammydodger123456
▴ 40
1
vote
3
replies
255
views
CCA with random effects model
CCA
updated 24 days ago by
dariober
14k • written 25 days ago by
leranwangcs
▴ 120
1
vote
1
reply
403
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
7 days ago by
renan.igor
• 0
1
vote
2
replies
327
views
BAM to CRAM and BAM recover with smaller size
BAM
samtools
CRAM
updated 23 days ago by
jkbonfield
★ 1.2k • written 6 weeks ago by
geocarvalho
▴ 360
1
vote
4
replies
814
views
I want to calculate if the sample has whole genome duplication event or not?
sequencing
wgs
17 days ago by
Hyper_Odin
▴ 310
1
vote
2
replies
1.0k
views
An issue with application of SPAdes genome assembly in Galaxy
Galaxy
SPAdes
updated 24 days ago by
Ram
43k • written 2.4 years ago by
adnan.lahuf
• 0
1
vote
0
replies
63
views
Simulation of label-free bottom-up proteomics expression dataset
label-free
bottom-up
lc-ms
proteomics
16 hours ago by
KABILAN
▴ 50
1
vote
2
replies
316
views
Extracting information from gff3 file produced by augustus
augustus
gff3
updated 11 days ago by
Istvan Albert
100k • written 12 days ago by
Jiang
• 0
1
vote
0
replies
155
views
DESeq2 comparing timepoints within treatment and account for background control change
RNAseq
DEG
DESeq2
updated 15 days ago by
Ram
43k • written 15 days ago by
ian.will
▴ 30
1
vote
2
replies
203
views
alignment result
RNA-seq
samtools
hisat2
1 day ago by
ahmad.sajad4541
• 0
1
vote
2
replies
923
views
vg surject for long reads
long-reads
vg
variation-graph
surject
updated 21 days ago by
Ram
43k • written 23 months ago by
ved_vyas
▴ 10
1
vote
3
replies
348
views
Ensembl gene id conversion
biomart
ensembl
updated 10 days ago by
ATpoint
82k • written 12 days ago by
naveedhasan2000
• 0
1
vote
2
replies
626
views
Nanopore multisample variant calling
SNPs
nanopore
SNP-calling
variants
multisample
28 days ago by
colindaven
6.4k
1
vote
1
reply
167
views
Failed kmer content
kmer
illumina
ngs
updated 3 days ago by
Ram
43k • written 3 days ago by
Kasturi
• 0
1
vote
2
replies
267
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq
kallisto
10 days ago by
bioinfo
▴ 150
1
vote
3
replies
4.1k
views
Evaluating removing batch effect tools with PCA or MDS?
bioconductor
limma
sva
r
batch-effect
updated 8 days ago by
Ram
43k • written 7.6 years ago by
Lluís R.
★ 1.2k
1
vote
2
replies
202
views
In need of help with my RNA velocity trajectory inference pipeline!
RNAvelocity
18 days ago by
phhelou5
• 0
1
vote
0
replies
143
views
Seeking Advice on Gene Ontology Analysis for Bulk RNA-Seq Data Without Control Samples
Gene-ontology
RNA-seq
R
updated 11 days ago by
Ram
43k • written 11 days ago by
Oscar
▴ 10
1
vote
1
reply
247
views
RNA seq normalization and gene gene correlation
rna-seq
pearson-correlation
vst
updated 14 days ago by
Ram
43k • written 14 days ago by
Fish
• 0
1
vote
2
replies
234
views
permutation test in edgeR
rna-seq
edgeR
updated 4 days ago by
Gordon Smyth
★ 7.0k • written 18 days ago by
Netanel
• 0
1
vote
0
replies
185
views
Synthetic lethality and cancer database
interaction
lethal
synthetic
28 days ago by
Shicheng Guo
★ 9.4k
1
vote
1
reply
196
views
ComplexHeatmap anno_mark position changes with height of gene expression heatmap
ComplexHeatmap
11 days ago by
CTLong
▴ 110
1
vote
2
replies
821
views
Replacing default numbers with geneNames in enhancedVolcano
EnhancedVolcano
updated 24 days ago by
Ram
43k • written 2.6 years ago by
Mohan
• 0
1
vote
3
replies
1.7k
views
Using Nanoplot to asses quality of ONT data
ONT
Long-read-sequencing
NanoPlot
updated 21 days ago by
Ram
43k • written 2.3 years ago by
matt81rd
▴ 10
1
vote
1
reply
412
views
Long reads Annotation
long-reads
pacbio
updated 21 days ago by
Ram
43k • written 2.1 years ago by
Gerardo
• 0
1
vote
8
replies
3.4k
views
Best way to address different batches of RNA-seq
sequence
RNA-Seq
RPKM
Fold-Change
batch-effect
updated 9 days ago by
Ram
43k • written 7.0 years ago by
tud55122
▴ 20
1
vote
0
replies
368
views
Differential expression analysis on multiple integrated datasets
microarray
Z-score
limma
differential-gene-expression
meta-analysis
updated 17 days ago by
Ram
43k • written 2.4 years ago by
michael.s
▴ 10
1
vote
0
replies
1.1k
views
interpretation of trajectory and batch effect
monocle3
batch-effect
trajectory
updated 18 days ago by
Ram
43k • written 3.5 years ago by
tushard1987
▴ 10
0
votes
1
reply
1.3k
views
About BatchQC packages error
Batch-effect
R
updated 9 days ago by
Ram
43k • written 6.1 years ago by
Jun
• 0
0
votes
0
replies
64
views
Running Phylogenetic Analysis With NCBI Genome
population-genetics
phylogenetic
updated 2 hours ago by
Ram
43k • written 17 hours ago by
SineWave
• 0
0
votes
2
replies
578
views
Bacterial contamination in human DNA sample
Long-read-sequencing
Bacterial-contamination
updated 21 days ago by
Ram
43k • written 22 months ago by
priya.bmg
▴ 60
0
votes
5
replies
421
views
Error running local blastn in R using system2
blastn
NCBI
R
28 days ago by
Harrison
• 0
0
votes
1
reply
226
views
AUC=1, is it possible after lasso regression?
lasso
AUC
updated 25 days ago by
Jeremy Leipzig
22k • written 27 days ago by
Amir
• 0
0
votes
0
replies
156
views
BIOM format can contain tabular data ?
BIOM
phyloseq
biomformat
R
9 days ago by
chemokine-1
▴ 10
0
votes
0
replies
201
views
Lncipedia GTF file error
Proteomics
updated 7 days ago by
Ram
43k • written 7 days ago by
atharvakarkare14
▴ 10
514 results • Page
3 of 11
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