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908 results • Page 2 of 19
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News: User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning RNA-seq
updated 11 months ago by 43k • written 5.8 years ago by ▴ 10
2
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2
replies
3.2k
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News: Upcoming Hands-On NGS Data Analysis Workshops 2018
Mapping Workshop RNA-Seq Quality-Control DNA-Seq
updated 11 months ago by 43k • written 6.4 years ago by 11k
0
votes
2
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938
views
News: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics radseq stacks
updated 7 months ago by ★ 1.7k • written 7 months ago by ▴ 110
5
votes
2
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928
views
News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute challenge
updated 11 months ago by 43k • written 4.8 years ago by ▴ 70
0
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2
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1.8k
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News: Exponential growth of data in biomedicine needs a skilled and experienced workforce
R biotech gene RNA-Seq
updated 12 months ago by 43k • written 6.9 years ago by ▴ 70
2
votes
2
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2.7k
views
News: Interview Dealing with RADseq data: some tips from our instructors
NGS RADseq
updated 11 months ago by 43k • written 6.6 years ago by ★ 2.5k
8
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2
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2.4k
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News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 12 months ago by 43k • written 7.1 years ago by ▴ 120
3
votes
2
replies
1.3k
views
News: Genome Informatics meeting software list
meetings genomics informatics software
updated 11 months ago by 43k • written 6.5 years ago by 26k
3
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2
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1.2k
views
News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS next-generation-sequencing
updated 11 months ago by 43k • written 5.9 years ago by ★ 3.0k
0
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2
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2.1k
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News: RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
NGS RNA-Seq sequencing
updated 11 months ago by 43k • written 6.3 years ago by 11k
8
votes
2
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820
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
4 weeks ago by David Langenberger 11k
5
votes
2
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1.7k
views
News: #scRNABIO & organoids meeting
single-cell-sequencing microfluidics organoids
updated 11 months ago by 43k • written 5.7 years ago by ▴ 320
3
votes
2
replies
755
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
0
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2
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2.0k
views
News: Illumina iSeq 100 sequencer
firefly illumina iSeq100
updated 11 months ago by 43k • written 6.3 years ago by 142k
0
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2
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2.6k
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News: PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
Rstudio R Shiny
updated 12 months ago by 43k • written 7.1 years ago by ▴ 110
1
vote
2
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1.7k
views
News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq webinar rna-seq single-cell
updated 11 months ago by 43k • written 5.0 years ago by ▴ 580
1
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2
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1.4k
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News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 11 months ago by 43k • written 6.1 years ago by ▴ 70
0
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2
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1.9k
views
News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
biomarker next-gen-sequencing multiomics cancer
updated 12 months ago by 43k • written 6.9 years ago by ▴ 750
2
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2
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1.4k
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News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R next-gen-sequencing
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
13
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2
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1.5k
views
News: Thank you Biostars!
meta
updated 11 months ago by 43k • written 5.0 years ago by ▴ 140
6
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2
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2.1k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS RNA-Seq workshop
updated 11 months ago by 43k • written 6.8 years ago by 11k
0
votes
2
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213
views
News: NGS & Microarray Custom Data Analysis Training Program
snp RNA-Seq next-gen-sequencing ChIP-Seq
updated 11 months ago by 43k • written 4.8 years ago by • 0
1
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2
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1.7k
views
News: Workshop: Data analysis in high throughput biology. deadline today (2 places left)
next-gen R RNA-Seq
updated 12 months ago by 43k • written 7.1 years ago by ★ 2.5k
1
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2
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1.1k
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
2 days ago by Zhenyu Zhang ★ 1.2k
6
votes
2
replies
1.1k
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 11 months ago by 43k • written 5.3 years ago by ★ 2.4k
5
votes
2
replies
1.5k
views
News: Google Dataset Search
google
updated 11 months ago by 43k • written 5.7 years ago by 161k
3
votes
2
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1.0k
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News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 11 months ago by 43k • written 5.3 years ago by • 0
0
votes
2
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1.1k
views
News: Training - Introduction to Deep Learning
Deep-Learning Machine-Learning Python-Programming
updated 11 months ago by 43k • written 3.8 years ago by ★ 2.5k
1
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2
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1.0k
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News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 11 months ago by 43k • written 5.2 years ago by ▴ 30
3
votes
2
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613
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News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
5 weeks ago by Johannes W. Dietrich • 0
2
votes
2
replies
950
views
News: Interested in Machine Learning?
deep-learning machine-learning
updated 11 months ago by 43k • written 5.0 years ago by ★ 2.5k
2
votes
2
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1.4k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 11 months ago by 43k • written 5.9 years ago by ★ 5.2k
0
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2
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1.7k
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News: 2 Days Hands on Workshop on Transcriptome-Seq Data Analysis
RNA-Seq sequencing SNP Assembly
updated 12 months ago by 43k • written 6.9 years ago by • 0
4
votes
2
replies
605
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
8 months ago by PeterC_NCBI ▴ 410
1
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2
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1.8k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor
Statistics R Metagenomics Bioconductor
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
0
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2
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1.5k
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News: Webinar on fast and accurate DNA variant calling on 26 Apr 2017
variant-calling SNP gatk strand-ngs alignment
updated 12 months ago by 43k • written 7.1 years ago by ▴ 70
7
votes
2
replies
1.2k
views
News: NGS Data Analysis Workshops 2024
scRNA-seq dna-seq rna-seq nextflow
3 months ago by David Langenberger 11k
1
vote
2
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1.7k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 11 months ago by 43k • written 4.1 years ago by ★ 3.7k
3
votes
2
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694
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
11 months ago by PeterC_NCBI ▴ 410
1
vote
2
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196
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News: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering Spatial-transcriptomics
updated 14 hours ago by • 0 • written 1 day ago by ▴ 10
12
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2
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483
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News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
27 days ago by David Langenberger 11k
0
votes
2
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701
views
News: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 11 months ago by 43k • written 4.5 years ago by 23k
0
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2
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3.5k
views
News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS Linux R
updated 11 months ago by 43k • written 6.7 years ago by ★ 2.5k
1
vote
2
replies
765
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News: Ensembl reduced functionality, early March
ensembl
updated 11 months ago by 43k • written 4.3 years ago by 23k
2
votes
2
replies
534
views
News: Unix and Shell Scripting for Bioinformatics course
Bash Unix Shell-Scripting
4 months ago by carlopecoraro2 ★ 2.5k
4
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2
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3.0k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
4
votes
2
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1.3k
views
News: Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop methylation bisulfite
updated 11 months ago by 43k • written 4.6 years ago by ★ 1.0k
0
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1
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1.5k
views
News: Symposium, Accelerating Biology 9-11, Jan, 2018 : Digitizing Life, Pune, India
symposium NGS
updated 11 months ago by 43k • written 6.6 years ago by 5.8k
0
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1
reply
1.1k
views
News: Google Summer of Code 2020 announced for mentor organisations
internship GSoC
updated 11 months ago by 43k • written 4.4 years ago by 23k
0
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1
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821
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News: LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS Online-Workshop
updated 3 months ago by 43k • written 3 months ago by 11k
908 results • Page 2 of 19
Recent Votes
Answer: HCL database download
Answer: Tissue-specific DEG analysis with DEseq2
Answer: TFs and Gene databases
Answer: TFs and Gene databases
Comment: How to access TCGA samples that were treated with a specific drug?
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
Answer: TFs and Gene databases
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Teacher to jared.andrews07 ★ 16k
Popular Question to synat.keam ▴ 100
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Answer: HCL database download by sooni ▴ 20
I solved the problem by conneting another internet exploer. I think it was probably a problem with Chrome itself.
Answer: barcode of TCR-sequencing by mizraelson ▴ 60
Hi, What protocol did you use for TCR-seq library preparation? Generally speaking, there is no need to remove barcodes, as MiXCR can work …
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C by qwertyuiop26 • 0
I've implemented fm index with backward search and need an inexact search to implement on FM index, I couldn't understand how fm index coul…
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA by Chris Dean ▴ 400
The md5 hash they refer to on line 22 (f46a7ca244afef522b22a11bd33d27b1) appears to map to a *S. aureus* strain, not *S. hominis* (you can …
Comment: Correlating Bulk Differential Expression with quantitative by Qroid ▴ 40
You could try including disease scale for each sample as a design factor. See the vignette here https://bioconductor.org/packages/devel/bio…
Comment: Help with generating annotation database for dog genome to use in ANNOVAR for v by sainavyav22 • 0
Hello, Thanks for the reply. I could only see the refMrna.fa file in the link you provided. Where can I get the refGene.txt file. Thanks fo…
Answer: Understanding STAR output (Aligned.out.sam file) by heelpPlease • 0
After thoroughly reviewing all the documents again, I've identified the root cause of my initial issue: the failure to detect essential gen…
Comment: Understanding STAR output (Aligned.out.sam file) by heelpPlease • 0
Thank you! Now that I understand that there is a difference between read and fragment, I could actually find a lot of helpful information..…
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA by sovrappensiero ▴ 90
Thanks again. Hmm...this makes me suspicious of whether this normalization is actually possible. In case you'd like to take a look, [here]…
Comment: Filtering Multi-sample VCF file for all except one Genotype by Jeremy Leipzig 22k
The seven genotypes being 58025AA, 58025AG, 58051TT, 58051TC, 58051CC, 58057TT, 58057TC
Answer: TFs and Gene databases by jared.andrews07 ★ 16k
See [TFlink](https://tflink.net/), [KnockTF2](https://bio.liclab.net/KnockTFv2/index.php), [TFBSDB](https://tfbsdb.systemsbiology.net/), an…
Comment: Filtering Multi-sample VCF file for all except one Genotype by GenoMax 142k
> Seven genotpyes have been sampled and all variants, which belong to one of those genotpyes are to be "erased" (or every other variant exc…
Comment: Filtering Multi-sample VCF file for all except one Genotype by Pierre Lindenbaum 161k
> , filter a multisample VCF file for all genotypes except one of them filter for what ?
Answer: Applying the metacell2 algorithm using python by Wayne ★ 2.0k
I had hoped things like [this Jupyter notebook for the rabbit data analysis](https://nbviewer.org/github/tanaylab/rabembflow/blob/master/2-…
Comment: Help with running egsea() by 1769mkc ★ 1.2k
please provide the design matrix mean the metadata of the model fit2 which is there in the code . i guess other users can help
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