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News: Free draft copy of book on bioinformatics tools
alignment Assembly RNA-seq next-gen
updated 15 months ago by 43k • written 8.9 years ago by ★ 1.1k
6
votes
7
replies
5.4k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 14 months ago by 43k • written 10.3 years ago by ▴ 650
17
votes
7
replies
9.0k
views
News: Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop Assembly transcriptomics RNA-Seq
updated 2.1 years ago by 43k • written 9.4 years ago by 11k
21
votes
7
replies
7.7k
views
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript RNA-seq gene
updated 14 months ago by 43k • written 11.4 years ago by ▴ 250
38
votes
7
replies
2.3k
views
News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
9 months ago by David Langenberger 11k
10
votes
7
replies
2.9k
views
News: Linux for Biologists e-book (free to read online)
linux python galaxy conda virtual-machine
2.6 years ago by vimalkvn ▴ 320
12
votes
7
replies
3.9k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 13 months ago by 43k • written 9.5 years ago by ★ 5.2k
2
votes
6
replies
2.9k
views
News: Master in integrated systems biology / Luxembourg
systems-biology Masters-course
updated 11 months ago by 43k • written 6.8 years ago by ▴ 130
17
votes
6
replies
9.0k
views
News: Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation RNA-seq
updated 13 months ago by 43k • written 10.1 years ago by 11k
32
votes
6
replies
13k
views
7 follow
News: Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi genbank pubmed command-line entrez
updated 14 months ago by 43k • written 10.2 years ago by 161k
1
vote
6
replies
1.2k
views
News: Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometry R
updated 15 months ago by ▴ 100 • written 16 months ago by ★ 2.5k
8
votes
6
replies
1.5k
views
News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 11 months ago by 43k • written 5.5 years ago by 100k
8
votes
6
replies
17k
views
News: Bioinformatics PhD Programs in the US
education PhD
updated 11 months ago by 43k • written 6.4 years ago by ▴ 70
3
votes
6
replies
2.7k
views
News: Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
updated 12 months ago by 43k • written 7.8 years ago by 26k
8
votes
6
replies
4.0k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 14 months ago by 43k • written 11.3 years ago by 11k
9
votes
6
replies
2.2k
views
News: No more hidden solutions in bioinformatics
precision-medicine genome-sequencing
updated 15 months ago by 43k • written 8.9 years ago by ★ 1.2k
14
votes
6
replies
7.1k
views
News: FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS RNA-Seq workshop
updated 16 months ago by 43k • written 8.8 years ago by 11k
0
votes
5
replies
1.6k
views
News: LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS training RNA-Seq DNA-Seq
updated 11 months ago by 43k • written 5.9 years ago by 11k
4
votes
5
replies
2.8k
views
News: Kover will provide support via Biostars
kmer kover machine-learning
updated 12 months ago by 43k • written 7.9 years ago by ▴ 90
9
votes
5
replies
10k
views
8 follow
News: Online course: Learn Bioinformatics in 100 hours
biostars online-course
updated 14 months ago by 43k • written 6.7 years ago by 100k
3
votes
5
replies
2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
8 months ago by Alexander ▴ 220
3
votes
5
replies
2.3k
views
News: Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
kegg gene-enrichment cancer gene-ontology
updated 12 months ago by 43k • written 7.6 years ago by 7.5k
9
votes
5
replies
3.6k
views
News: SAMTOOLS 1.4 released
samtools
updated 11 months ago by 43k • written 7.1 years ago by 161k
9
votes
5
replies
8.8k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 14 months ago by 43k • written 11.4 years ago by ▴ 50
0
votes
5
replies
2.6k
views
News: Workshop: Data manipulation and visualization with Python
next-gen genome SNP sequence
updated 12 months ago by 43k • written 7.4 years ago by ★ 2.5k
9
votes
5
replies
3.1k
views
News: The NIH Software Discovery Index | We invite your comments
NIH software-catalog
updated 2.3 years ago by 43k • written 9.6 years ago by 26k
14
votes
5
replies
3.4k
views
News: Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta biostars
updated 14 months ago by 43k • written 10.7 years ago by 54k
0
votes
5
replies
2.0k
views
News: Ashg 2012 Biostar Meetup
ASHG
updated 14 months ago by 43k • written 11.5 years ago by 12k
33
votes
5
replies
3.8k
views
News: FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Epigenetics Workshop Bisulfite-Sequencing
updated 12 months ago by 43k • written 7.9 years ago by ▴ 460
1
vote
5
replies
1.1k
views
News: Cancer Genomics course - 2 seats left
Genomics Cancer-Genomics R
updated 14 months ago by 43k • written 15 months ago by ★ 2.5k
3
votes
5
replies
1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 7 months ago by ▴ 120 • written 17 months ago by ▴ 30
6
votes
5
replies
5.3k
views
News: NCBI MagicBlast ( Short read mapper )
blast ncbi short-read mapper hts
updated 12 months ago by 43k • written 7.6 years ago by 161k
7
votes
5
replies
2.6k
views
News: Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen Unix Assembly alignment
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.5k
8
votes
4
replies
2.0k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 10 months ago by 43k • written 4.6 years ago by ★ 2.4k
1
vote
4
replies
1.5k
views
News: Spring School for RNA-seq Sequence Analysis
RNA-Seq genome sequence sequencing
updated 12 months ago by 43k • written 7.3 years ago by ▴ 10
4
votes
4
replies
1.9k
views
News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome Computational-Biology
updated 11 months ago by 43k • written 6.0 years ago by ▴ 20
12
votes
4
replies
2.0k
views
News: #NGSchool2018 summer school in bioinformatics
NGSchool Personalised-Medicine Nanopore
updated 11 months ago by 43k • written 5.9 years ago by ▴ 290
10
votes
4
replies
1.2k
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 13 months ago by ▴ 30 • written 14 months ago by 11k
9
votes
4
replies
2.5k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by 43k • written 2.7 years ago by ★ 2.5k
14
votes
4
replies
3.4k
views
News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 21 months ago by 43k • written 8.2 years ago by 11k
1
vote
4
replies
1.8k
views
News: Bioconductor Development Visualization
bioconductor
updated 21 months ago by 43k • written 9.0 years ago by 26k
10
votes
4
replies
1.8k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq
updated 11 months ago by 43k • written 5.3 years ago by 11k
33
votes
4
replies
6.8k
views
News: Rosalind: A Novel Bioinformatics Education Platform
education
updated 14 months ago by 43k • written 11.6 years ago by ▴ 330
3
votes
4
replies
2.4k
views
News: Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics microbiome training
updated 12 months ago by 43k • written 7.5 years ago by ▴ 140
5
votes
4
replies
1.9k
views
News: 2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
updated 12 months ago by 43k • written 7.2 years ago by • 0
4
votes
4
replies
2.9k
views
News: Join The Dnanexus Developer Program
api cloud
updated 14 months ago by 43k • written 10.9 years ago by ▴ 30
4
votes
4
replies
1.7k
views
News: VCFclin working group
vcfclin
updated 13 months ago by 43k • written 10.0 years ago by ▴ 30
3
votes
4
replies
2.0k
views
News: OmicCircos was updated
R OmicCircos
updated 23 months ago by 43k • written 9.1 years ago by ▴ 50
0
votes
4
replies
1.9k
views
News: What NGS courses would you like us to prepare for 2016? (one week left)
NGS Survey Workshop
updated 20 months ago by 43k • written 8.4 years ago by 11k
9
votes
4
replies
3.7k
views
News: Conference Announcement - Camda 2013
conference classification
updated 14 months ago by 43k • written 11.3 years ago by ▴ 240
1,000 results • Page 2 of 20
Recent Votes
Answer: Seurat merge and batch correction
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Answer: Missing protein (VEGF-A) in String db
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Recent Replies
Comment: Missing protein (VEGF-A) in String db by shalespringer • 0
Thank you for replying here; this helped me figure out why MAPK10 was missing from my results. It was also marked as a pseudogene in the En…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
These are the first lines of the output: (Please is it normal to have NA in the P value column ?) CHR …
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by atowns21 • 0
So I used the barcodes that I created (combos of positions 1-10 and 11-20) and I obtained similar alignment stats as the paper I pulled the…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
Thank you so much, it actually worked!
Answer: Rare Disease Variant Pathway Analysis by LauferVA 4.2k
Hi @efc1e545 , First a caveat. the information we most need in order to help guide you to a successful conclusion is not provided in thi…
Answer: Sequence read length shorter than flow cell specification by swbarnes2 14k
The company probably had you share your run with someone who needed the extra bases. So you get the extra bases free. Just use them unle…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix by Ram 43k
Thank you, the `csvtk spread` is super useful. I usually import into R using `lapply` then `Reduce` using `merge` but this might be easier.
Comment: Annovar using R package by DKA ▴ 40
Thank you for your guidance. The thing is that I am unfamiliar with using such environments, unfortunately.
Comment: Treatment VS Control in Single Cell RNAseq analysis by ATpoint 82k
Open a new question, with details.
Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets by ATpoint 82k
I recommend https://bioconductor.org/books/3.18/OSCA.basic/normalization.html as well as the "advanced" section in this book.
Comment: Why gatk VariantAnnotator required bam and coverage files by QX • 0
thank you!
Comment: Treatment VS Control in Single Cell RNAseq analysis by kilcdincer ▴ 10
Hello, I have more or less same experimental setting and was wondering how you proceeded with your analysis? Can I reach its GitHub reposit…
Comment: BLAST using both nucleotides and taxonomic local databases by GenoMax 141k
> I ask this as some BLAST command fields as scinames or sblastnames do not give any output with a classic nt BLAST If that information is…
Answer: BLAST using both nucleotides and taxonomic local databases by 5heikki 11k
This has been discussed [many times][1] [1]: https://www.biostars.org/p/76551/
Answer: why renaming Idents in Seurat object doesn't work? by Bioinfotec ▴ 10
I think when you give indent to seuObj : ```r Idents(seuObj) <- 'RNA_snn_res.0.1' ``` You may wrongly assign other value to it such as `…
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