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News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
21 days ago by David Langenberger 11k
0
votes
2
replies
1.1k
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
15 months ago by David Langenberger 11k
1
vote
2
replies
1.4k
views
News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 11 months ago by 43k • written 6.1 years ago by ▴ 70
1
vote
2
replies
907
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
21 months ago by carlopecoraro2 ★ 2.5k
11
votes
2
replies
2.4k
views
News: Ensembl 76 is out
Genome-browser Ensembl
updated 2.4 years ago by 43k • written 9.7 years ago by 23k
1
vote
2
replies
1.7k
views
News: Workshop: Data analysis in high throughput biology. deadline today (2 places left)
next-gen R RNA-Seq
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.5k
7
votes
2
replies
1.1k
views
News: NGS Data Analysis Workshops 2024
scRNA-seq dna-seq rna-seq nextflow
3 months ago by David Langenberger 11k
0
votes
2
replies
695
views
News: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 11 months ago by 43k • written 4.5 years ago by 23k
10
votes
2
replies
3.3k
views
News: Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq bioconductor
updated 2.3 years ago by 43k • written 9.6 years ago by 161k
2
votes
2
replies
529
views
News: Unix and Shell Scripting for Bioinformatics course
Bash Unix Shell-Scripting
4 months ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
762
views
News: Ensembl reduced functionality, early March
ensembl
updated 10 months ago by 43k • written 4.3 years ago by 23k
13
votes
2
replies
1.5k
views
News: Thank you Biostars!
meta
updated 11 months ago by 43k • written 5.0 years ago by ▴ 140
6
votes
2
replies
2.1k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS RNA-Seq workshop
updated 11 months ago by 43k • written 6.8 years ago by 11k
2
votes
2
replies
1.4k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R next-gen-sequencing
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
0
votes
2
replies
1.5k
views
News: Webinar on fast and accurate DNA variant calling on 26 Apr 2017
variant-calling SNP gatk strand-ngs alignment
updated 11 months ago by 43k • written 7.0 years ago by ▴ 70
2
votes
2
replies
1.2k
views
News: Bioinformatics Solutions on AWS
Cloud AWS
updated 2.9 years ago by 43k • written 3.0 years ago by ▴ 20
6
votes
2
replies
1.1k
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.4k
0
votes
2
replies
1.3k
views
News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
17 months ago by David Langenberger 11k
2
votes
2
replies
737
views
News: Free online seminars/journal club
seminars journal-clubs
updated 13 months ago by 43k • written 3.8 years ago by ▴ 40
2
votes
2
replies
743
views
News: ISO usability testers for NCBI comparative genome viewer
comparative eukaryotic alignment pangenome
2.2 years ago by SanjidaR_NCBI ▴ 60
13
votes
2
replies
3.1k
views
News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 14 months ago by 43k • written 11.7 years ago by 100k
6
votes
2
replies
1.8k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 14 months ago by 43k • written 11.5 years ago by 11k
6
votes
2
replies
1.5k
views
News: Biostars On The Genome Technology Cover
biostars
updated 14 months ago by 43k • written 11.3 years ago by 100k
3
votes
2
replies
603
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
4 weeks ago by Johannes W. Dietrich • 0
2
votes
2
replies
1.9k
views
News: Introducing a new Instructor of Physalia-Courses: Dr. January Weiner
next-gen SNP sequence
updated 12 months ago by 43k • written 7.4 years ago by ★ 2.5k
2
votes
2
replies
2.7k
views
News: ENCODE 2015: Research Applications and Users Meeting
workshop mouse-encode encode
updated 13 months ago by 43k • written 8.9 years ago by 35k
0
votes
2
replies
1.1k
views
News: Training - Introduction to Deep Learning
Deep-Learning Machine-Learning Python-Programming
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
6
votes
2
replies
2.6k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS RNA-Seq workshop
updated 12 months ago by 43k • written 7.4 years ago by 11k
0
votes
2
replies
718
views
News: Seascape Genomics in R
Genomics Seascape R
updated 17 months ago by 43k • written 18 months ago by ★ 2.5k
0
votes
2
replies
2.1k
views
News: Seqnews.Net: Discover And Share News On Next-Generation Sequencing
next-gen-sequencing
updated 14 months ago by 43k • written 11.4 years ago by 11k
6
votes
2
replies
2.5k
views
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment RNA-Seq
updated 12 months ago by 43k • written 7.2 years ago by ★ 2.5k
8
votes
2
replies
792
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
26 days ago by David Langenberger 11k
2
votes
2
replies
1.4k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 11 months ago by 43k • written 5.9 years ago by ★ 5.2k
5
votes
2
replies
3.7k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 14 months ago by 43k • written 10.5 years ago by ★ 2.4k
6
votes
2
replies
2.3k
views
News: Galaxy-specific Biostar Instance
galaxy biostars
updated 14 months ago by 43k • written 10.0 years ago by ▴ 380
2
votes
2
replies
1.9k
views
News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 22 months ago by 43k • written 9.0 years ago by ★ 1.6k
0
votes
2
replies
1.7k
views
News: 2 Days Hands on Workshop on Transcriptome-Seq Data Analysis
RNA-Seq sequencing SNP Assembly
updated 11 months ago by 43k • written 6.9 years ago by • 0
2
votes
2
replies
2.2k
views
News: 2017 NIH SUMMER INTERNSHIP PROGRAM IN BIOMEDICAL RESEARCH (SIP)--applications open
NIH training
updated 12 months ago by 43k • written 7.5 years ago by 26k
0
votes
2
replies
211
views
News: NGS & Microarray Custom Data Analysis Training Program
snp RNA-Seq next-gen-sequencing ChIP-Seq
updated 11 months ago by 43k • written 4.8 years ago by • 0
0
votes
2
replies
1.9k
views
News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
biomarker next-gen-sequencing multiomics cancer
updated 11 months ago by 43k • written 6.8 years ago by ▴ 750
7
votes
2
replies
2.3k
views
News: Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS microRNA workshop
updated 13 months ago by 43k • written 7.9 years ago by 11k
4
votes
2
replies
601
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
7 months ago by PeterC_NCBI ▴ 410
1
vote
2
replies
1.6k
views
News: My own brand-new blog for bioinformatics learning
learning
updated 14 months ago by 43k • written 6.4 years ago by ▴ 100
0
votes
2
replies
2.6k
views
News: PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
Rstudio R Shiny
updated 11 months ago by 43k • written 7.1 years ago by ▴ 110
4
votes
2
replies
1.3k
views
News: Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop methylation bisulfite
updated 11 months ago by 43k • written 4.6 years ago by ★ 1.0k
5
votes
2
replies
1.5k
views
News: Google Dataset Search
google
updated 11 months ago by 43k • written 5.7 years ago by 161k
11
votes
2
replies
1.5k
views
News: ASA discusses limitations of p-values what are the alternatives?
statistics p-value
updated 13 months ago by 43k • written 8.1 years ago by 14k
8
votes
2
replies
906
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 13 months ago by 43k • written 4.3 years ago by 11k
7
votes
2
replies
2.3k
views
News: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing moRNAs pri-miRNAs zebrafish
updated 21 months ago by 43k • written 8.4 years ago by ★ 2.4k
3
votes
2
replies
3.8k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 14 months ago by 43k • written 11.3 years ago by 20k
1,000 results • Page 5 of 20
Recent Votes
Answer: NGS forensics: how to know if data is fabricated
Comment: Adjust pvalue in R with different approach give me all different outcome
Comment: Bacterial plasmid analysis
Comment: DESeq2 processing problems
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
What Is The Difference Between Structural Variants (Svs) And Copy-Number Variants (Cnvs)?
What Is The Difference Between Structural Variants (Svs) And Copy-Number Variants (Cnvs)?
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Recent Replies
Comment: Bacterial plasmid analysis by GenoMax 141k
Can you classify the plasmids based on function (resistance genes they are carrying or some other criteria). Sizes above are indicating a w…
Comment: DESeq2 processing problems by ATpoint 82k
Initially posted here https://support.bioconductor.org/p/9158036/ where I suggested to put code and data and noted that GEOquery returns ar…
Answer: Post-imputation plot by LChart 3.9k
I agree that some need to be flipped (A/T and C/G where your panel frequency is 1 - ref panel frequency). There are other variants which yo…
Comment: RNA editing sites based on DNA seq and RNA seq by Adam ▴ 30
Are those 20% unaligned reads coming after hyper-editing detection?
Answer: How to find overlap of clusters in two seurat porject by Adam ▴ 30
I think your best bet would be to use annotation mapping. You can use the features of your clusters in group 1 and apply them to group 2 to…
Answer: DESeq2 processing problems by Adam ▴ 30
> when I put in the dataset, I am not able to run it for DEG analysis because system asks me to remove the first column which is of gene na…
Comment: Bacterial plasmid analysis by nicole.kavanagh • 0
Thank you so much for your quick response, I have been searching scientific papers for about a week but have failed to come up with a reaso…
Comment: Bacterial plasmid analysis by GenoMax 141k
> however I'm not sure this would be appropriate in my case as the plasmid sequences are obviously much more diverse and vary in size Can…
Answer: cnetplot category names are too long by bkleiboeker ▴ 370
I'm sure someone could find a more elegant solution using `stringr::str_wrap`, but for a one-time solution I did this: # my results of…
Comment: Telescope issue by GenoMax 141k
You could edit the SAM file but I wonder if this problem is present in your original fastq data file so if not inconvenient do the alignmen…
Comment: Mutect2 for mitochondria variant discovery by GenoMax 141k
> I keep getting error. Without providing information about the actual error no one can help. Please edit the post and add this informati…
Comment: Telescope issue by eleven11 • 0
Thank you! how would I correct that?
Comment: DESeq2 processing problems by Ram 43k
This is an open science community, not a place to write an email to Michael Love. Please address the entire community.
Comment: Post-imputation plot by kl ▴ 10
All of them are G/C and A/T variants Some seem mismatches based on AF and some seem to need flipping. I guess I am confused, as in the Mich…
Comment: Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x by Nafi • 0
Thank you for the reply I have 16 gb of RAM then I can give a try then.
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