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33
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4
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6.8k
views
News:
Rosalind: A Novel Bioinformatics Education Platform
education
updated 14 months ago by
Ram
43k • written 11.6 years ago by
phcompeau
▴ 330
1
vote
4
replies
1.8k
views
News:
Bioconductor Development Visualization
bioconductor
updated 21 months ago by
Ram
43k • written 9.0 years ago by
Sean Davis
26k
9
votes
4
replies
1.6k
views
News:
Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Laura
★ 1.8k
1
vote
4
replies
2.0k
views
News:
webserver of TCGA data www.tcgaportal.org
genome
RNA-Seq
TCGA
gene
updated 11 months ago by
Ram
43k • written 5.9 years ago by
xushutan
▴ 40
10
votes
4
replies
983
views
News:
Good morning
good
morning
updated 19 months ago by
Istvan Albert
100k • written 19 months ago by
Kevin Blighe
87k
2
votes
4
replies
2.0k
views
News:
Reminder: Igb Tutorial Starts In 30 Minutes
visualization
genome-browser
RNA-seq
updated 14 months ago by
Ram
43k • written 10.6 years ago by
Ann
★ 2.4k
7
votes
4
replies
2.7k
views
News:
Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python
training
updated 14 months ago by
Ram
43k • written 11.0 years ago by
Mary
11k
15
votes
4
replies
4.7k
views
News:
Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
dataviz
GenVisR
next-gen
R
updated 12 months ago by
Ram
43k • written 7.1 years ago by
carlopecoraro2
★ 2.5k
4
votes
4
replies
1.7k
views
News:
VCFclin working group
vcfclin
updated 13 months ago by
Ram
43k • written 10.0 years ago by
keilbeck
▴ 30
12
votes
4
replies
2.0k
views
News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Personalised-Medicine
Nanopore
updated 11 months ago by
Ram
43k • written 5.9 years ago by
kzkedzierska
▴ 290
2
votes
4
replies
1.2k
views
News:
Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R
RNA-seq
Bioconductor
updated 10 months ago by
Ram
43k • written 4.0 years ago by
carlopecoraro2
★ 2.5k
6
votes
4
replies
4.3k
views
News:
awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single-cell
RNA-Seq
updated 12 months ago by
Ram
43k • written 7.8 years ago by
Sean Davis
26k
19
votes
4
replies
2.5k
views
News:
How to analyze NGS data: An overview of nine different IT solutions
NGS
RNA-Seq
DNA-Seq
updated 12 months ago by
Ram
43k • written 7.5 years ago by
David Langenberger
11k
14
votes
4
replies
3.4k
views
News:
FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq
next-gen
NGS
updated 21 months ago by
Ram
43k • written 8.2 years ago by
David Langenberger
11k
8
votes
4
replies
2.0k
views
News:
supporting vg users on biostars
variation-graph
genome
vg
vgteam
updated 10 months ago by
Ram
43k • written 4.6 years ago by
Erik Garrison
★ 2.4k
3
votes
4
replies
2.0k
views
News:
OmicCircos was updated
R
OmicCircos
updated 23 months ago by
Ram
43k • written 9.1 years ago by
yhu
▴ 50
9
votes
3
replies
4.8k
views
News:
Bioinformatics Contest 2020. Call for problems
contest
updated 10 months ago by
Ram
43k • written 4.6 years ago by
alserg
▴ 920
5
votes
3
replies
1.5k
views
News:
Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 13 months ago by
Ram
43k • written 6.7 years ago by
GenoMax
141k
8
votes
3
replies
1.8k
views
News:
Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment
gene-ontology
david
go
updated 12 months ago by
Ram
43k • written 7.6 years ago by
pld
5.1k
4
votes
3
replies
1.9k
views
News:
How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
ChIP-Seq
RNA-Seq
updated 12 months ago by
Ram
43k • written 7.3 years ago by
Bohdan Khomtchouk
▴ 350
2
votes
3
replies
3.1k
views
News:
Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 14 months ago by
Ram
43k • written 11.2 years ago by
Istvan Albert
100k
5
votes
3
replies
904
views
News:
March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core
pipeline
Nextflow
updated 13 months ago by
Maxime Garcia
▴ 340 • written 14 months ago by
Matthias Zepper
4.5k
0
votes
3
replies
1.0k
views
News:
EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image-analysis
updated 11 months ago by
Ram
43k • written 5.5 years ago by
EMBL Events
▴ 10
20
votes
3
replies
2.7k
views
News:
Nature Comment: Core services: Reward bioinformaticians
career-path
updated 22 months ago by
Ram
43k • written 9.1 years ago by
rtliu
★ 2.2k
0
votes
3
replies
2.8k
views
News:
Physalia-courses: 16S rRNA gene Metabarcoding Workshop
RNA-seq
sequencing
SNP
gene
sequence
updated 12 months ago by
Ram
43k • written 7.5 years ago by
carlopecoraro2
★ 2.5k
0
votes
3
replies
873
views
News:
NCBI update complete. Aspera users please update your client.
NCBI
Submissions
GenBank
14 months ago by
PeterC_NCBI
▴ 410
0
votes
3
replies
1.1k
views
News:
Nvidia Clara Parabricks is FREE for R&D
nvidia
workflow
gpu
updated 16 months ago by
4galaxy77
2.8k • written 16 months ago by
Pierre Lindenbaum
161k
3
votes
3
replies
1.0k
views
News:
Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow
NGS
pipeline
2.0 years ago by
David Langenberger
11k
3
votes
3
replies
1.2k
views
News:
NCBI's IgBLAST version 1.21.0 is now available
IgBLAST
BLAST
T-Cell
NCBI
receptors
11 months ago by
PeterC_NCBI
▴ 410
0
votes
3
replies
2.4k
views
News:
Eukaryotic Metabarcoding workshop
next-gen
blast
alignment
updated 12 months ago by
Ram
43k • written 7.4 years ago by
carlopecoraro2
★ 2.5k
4
votes
3
replies
1.9k
views
News:
Proteomics and Genomics Submit your Research Journals
Research
Genomics
Journals
Proteomics
updated 17 months ago by
Ram
43k • written 8.8 years ago by
saichandh.perkannex
• 0
4
votes
3
replies
1.0k
views
News:
You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases
NCBI
BLAST
8 months ago by
PeterC_NCBI
▴ 410
3
votes
3
replies
2.3k
views
News:
Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 14 months ago by
Ram
43k • written 11.0 years ago by
bioinfo
▴ 830
18
votes
3
replies
2.5k
views
News:
LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq
NGS
Workshop
Variant-Calling
updated 21 months ago by
Ram
43k • written 7.2 years ago by
David Langenberger
11k
1
vote
3
replies
916
views
News:
NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST
blastx
BLAST
NCBI
ClusteredNR
15 months ago by
PeterC_NCBI
▴ 410
6
votes
3
replies
2.4k
views
News:
Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq
next-gen
RNA-Seq
updated 12 months ago by
Ram
43k • written 7.2 years ago by
Seema
• 0
2
votes
3
replies
1.7k
views
News:
GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference
BOSC
GCC
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Chris Fields
★ 2.2k
4
votes
3
replies
3.3k
views
News:
CAFE v4.0 available
phylogenetics
CAFE
updated 11 months ago by
Ram
43k • written 7.1 years ago by
Ben Fulton
▴ 150
4
votes
3
replies
1.9k
views
News:
Boston Genomics Hackathon (facilitated by NCBI)
NCBI
RNA-Seq
DNA-seq
hackathon
updated 12 months ago by
Ram
43k • written 8.1 years ago by
DCGenomics
▴ 330
7
votes
3
replies
4.6k
views
News:
Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api
cytoscape
updated 14 months ago by
Ram
43k • written 10.4 years ago by
B. Arman Aksoy
★ 1.2k
12
votes
3
replies
2.5k
views
News:
Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC
open-source
updated 12 months ago by
Ram
43k • written 8.1 years ago by
Philipp Bayer
8.3k
2
votes
3
replies
1.4k
views
News:
Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction
dna-extraction
rna-seq
updated 11 months ago by
Ram
43k • written 5.6 years ago by
tpjurkowski
▴ 20
0
votes
3
replies
2.2k
views
News:
Bioinformatics National Certification Examination (BINC)
BINC
updated 12 months ago by
Ram
43k • written 8.0 years ago by
binc
• 0
7
votes
3
replies
1.9k
views
News:
New NCBI Datasets home and documentation pages provide easier access
ncbi
gene
SARS-CoV-2
genome
updated 3.0 years ago by
Istvan Albert
100k • written 3.0 years ago by
e.cox
▴ 50
7
votes
3
replies
3.9k
views
News:
Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R
RNA-Seq
genome
NGSdata
updated 11 months ago by
Ram
43k • written 6.8 years ago by
carlopecoraro2
★ 2.5k
2
votes
3
replies
710
views
News:
NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser
NCBI
Alignments
Genome
16 months ago by
PeterC_NCBI
▴ 410
5
votes
3
replies
1.4k
views
News:
Top GitHub repos for biomedicine
open-source
software
GitHub
updated 11 months ago by
Ram
43k • written 5.3 years ago by
field.cady
▴ 50
5
votes
3
replies
2.1k
views
News:
Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen
exome
variation
updated 14 months ago by
Ram
43k • written 11.6 years ago by
Mary
11k
22
votes
3
replies
3.0k
views
News:
Biostar: 10,000 Question Milestone
meta
updated 14 months ago by
Ram
43k • written 10.9 years ago by
Istvan Albert
100k
4
votes
3
replies
3.2k
views
News:
-max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 11 months ago by
Ram
43k • written 5.5 years ago by
5heikki
11k
1,000 results • Page
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Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
biomaRt external_gene_name same entry multiple times when mapping to homolog mouse gene
Converting between Ensembl Versions
Comment: what is the purpose of indexing the reference genome (Kallisto)
Answer: what is the purpose of indexing the reference genome (Kallisto)
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
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I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
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starswillfade
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![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
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Can you clarify what `metainfo` you are referring to? The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
Comment: what is the purpose of indexing the reference genome (Kallisto)
by
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19k
Specifically: If we want to look up all the places where a 31mer is in a genome without and index, we have to compare that 31 to the first…
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
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3.9k
This is way easier to do solely in R now 10 years later. library(GenomicFeatures) library(rtracklayer) ## import GTF…
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by
dsull
★ 5.8k
I'll see if I can explain things in super simple terms (albeit with some abuse of the actual technical details) to provide a conceptual und…
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
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Jalil Sharif
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The updated code in R using rtracklayer for reading a gtf file. https://github.com/jalilsharif/gtf_utr_fix_r/blob/main/gencode_utr_fix_d…
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Thank you LauferVA, Your advice has been useful and I now a lot to think about and read. Also, I just wanted to clarify I do not ha…
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You cannot do it with Kallisto either. In fact, the indexation will fail in attempting to index a genome file
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What is your question? Add details and clarity. Ask a precise question and please avoid opening more questions on the same underlying issue…
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If you have the accession numbers can you not use something like `eutils`?
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> Next, I tried using bedtools window but in your original post you said > tried finding the intersection of these bed files using bedto…
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Thank you very much! I tried it out! This is a handy tool useful for many different applications, and in regards to my problem - although …
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
• 0
Thank you for replying Pierre. I first added a third column to the SNP bed file, so that I would get a range of 1 for each SNP awk 'B…
Comment: Create a new bed file with all pairwise combinations between two other bed files
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Pierre Lindenbaum
161k
> using bcftools Show us what you tried
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