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News: PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine NCI FDA proteomics.RNA
updated 11 months ago by 43k • written 5.6 years ago by ▴ 150
1
vote
1
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1.9k
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News: Bioinformatics Contest 2017. Results
contest
updated 11 months ago by 43k • written 7.1 years ago by ▴ 70
4
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1
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1.8k
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News: Bioinformatics Contest 2018
contest
updated 11 months ago by 43k • written 6.3 years ago by ▴ 40
3
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1
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1.2k
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News: UniProt: Change of FT and CC section in UniProtKB text format
uniprot protein
updated 10 months ago by 43k • written 4.6 years ago by ★ 2.4k
3
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1
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1.4k
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News: GATK returns to a fully open-source license
gatk
updated 11 months ago by 43k • written 6.9 years ago by 100k
0
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1
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1.5k
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News: Live Webinar on RNA-Seq Data Analysis on 28 Feb 2018
splice-variants RNA-Seq alignment Strand-NGS
updated 11 months ago by 43k • written 6.2 years ago by ▴ 70
0
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News: Webinar on Leukocyte immunobiology by Dr. Mario Deng, Professor of Medicine, UCLA on 9 Aug 2017, 8am PST
UCLA transcriptome-analysis RNA-Seq Strand-NGS
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
0
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1
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News: FINAL CALL - Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop RNA-Seq scRNA-Seq single-cell
6 months ago by David Langenberger 11k
0
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1
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1.8k
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News: Spatio-temporal Transcriptome of LncRNAs in Human Brain
Parkinson lncRNA Alzheimer brain transcriptome
updated 11 months ago by 43k • written 6.8 years ago by ▴ 860
0
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1
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723
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News: Our New Publication "Machine learning to support social media empowered patients in cancer care and cancer treatment decisions"
Machine-Learning Health-Informatics
updated 11 months ago by 43k • written 5.5 years ago by ▴ 20
0
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1
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371
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News: Online Course - Genomic Prediction
Genomic-Prediction Selective-Breeding
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
1
vote
1
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934
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News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection webinar RNA-Seq gene-fusion
updated 10 months ago by 43k • written 4.2 years ago by ▴ 40
1
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1
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News: Bioinformatics for Beginners @NIH, (Bethesda, MD, USA) Feb 13 - 16, 2018
beginners training
updated 11 months ago by 43k • written 6.5 years ago by ▴ 140
2
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1
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671
views
News: NGS & Microarray Custom Data Analysis Training Program
next-gen-sequencing RNA-Seq ChIP-Seq
updated 10 months ago by 43k • written 4.8 years ago by • 0
2
votes
1
reply
461
views
News: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI Codeathon
updated 7 months ago by 10k • written 7 months ago by ▴ 410
0
votes
1
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789
views
News: Advanced R Programming Course
R
updated 11 months ago by 43k • written 6.0 years ago by ★ 2.5k
6
votes
1
reply
1.0k
views
News: uniprot.org is moving from HTTP to HTTPS
protein database uniprot
updated 11 months ago by 43k • written 6.3 years ago by ★ 2.4k
1
vote
0
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322
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News: Course - Developing R/Bioconductor Packages for Genomics
R package-development Genomics Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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2.4k
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News: WORKSHOP - Landscape genetic data analysis using R
genome R RNA-Seq
updated 11 months ago by 43k • written 7.1 years ago by ▴ 110
0
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0
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867
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News: OmicsLogic Online Bioinformatics Program (March 2019) has started
genome RNA-Seq next-gen
updated 11 months ago by 43k • written 5.1 years ago by ▴ 340
1
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0
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893
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News: 7th Annual Mendelian Data Analysis Workshop - Learn bioinformatic tools for analysis of exome and genome sequence data for rare diseases.
sequence genome next-gen analysis
updated 11 months ago by 43k • written 5.1 years ago by ▴ 10
3
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0
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1.3k
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News: Nextflow Training Course
Pipeline Workflow NEXTFLOW
updated 10 months ago by 43k • written 4.6 years ago by ★ 2.5k
4
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0
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1.5k
views
News: All of Us (NIH) precision medicine research program is now open for enrollment
precision-medicine
updated 11 months ago by 43k • written 6.0 years ago by 141k
0
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0
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591
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News: The precisionFDA BioCompute Object App-a-thon submission period ends in 1 week!
app-a-thon biocompute precisionFDA
updated 10 months ago by 43k • written 4.5 years ago by ▴ 70
4
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0
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News: Workshop for genomic data visualization and interpretation
R RNA-Seq ggplot2 genomics
updated 11 months ago by 43k • written 5.4 years ago by 19k
0
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0
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1.3k
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News: Training in Creating Plots, Graphs and Maps using R @ NIH, USA, Mar 6 - 9, 2018
R plots maps graphs
updated 11 months ago by 43k • written 6.2 years ago by ▴ 140
2
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0
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799
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News: Course: RNA-seq Analyses in non-model organisms (Berlin 11-15 November 2019)
gene RNA-Seq next-gen
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
0
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0
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820
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News: Training course - Machine Learning in Berlin
Machine-Learning Python
updated 11 months ago by 43k • written 5.0 years ago by ★ 2.5k
1
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0
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718
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News: Training - Data visualization in R with ggplot2
R Dataviz ggplot2
updated 10 months ago by 43k • written 3.6 years ago by ★ 2.5k
0
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0
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1.5k
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News: Course: Advanced Python for Biologists. Berlin (Germany). 13-17 November 2017
Python
updated 11 months ago by 43k • written 6.6 years ago by ★ 2.5k
0
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0
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166
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News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 28 days ago by 43k • written 28 days ago by ★ 2.5k
0
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0
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189
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News: Online course - Flow cytometry data analysis with R/Bioconductor
R Flow-Cytometry Bioconductor
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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0
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643
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News: Webinar: Gen3 Data Exploration
sequence data-science gene
updated 10 months ago by 43k • written 4.8 years ago by ▴ 10
5
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0
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992
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News: Free online Ensembl REST API training
perl rest-api jupyter python ensembl
updated 11 months ago by 43k • written 5.4 years ago by 23k
0
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0
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243
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News: 3rd edition of the Winter School in Bioinformatics - Online February 26 - March 1
genomics reproducibility phylogenomics transcriptomics
3 months ago by carlopecoraro2 ★ 2.5k
0
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0
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428
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News: course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms DNA-Methylation BS-seq
updated 8 months ago by 43k • written 9 months ago by ★ 2.5k
0
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0
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466
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News: Bioinformatics courses in February
Genomics Bioinformatics-Training
updated 10 months ago by 43k • written 15 months ago by ★ 2.5k
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0
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1.0k
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News: Call For Papers - PSB 2019 Special session on Biological Data Privacy
paper
updated 11 months ago by 43k • written 6.0 years ago by • 0
1
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0
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856
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News: hackseqRNA: Computational RNA hackathon, Vancouver BC
hackathon RNA
updated 10 months ago by 43k • written 4.2 years ago by ▴ 50
0
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0
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2.0k
views
News: Metagenomics course. 9-13 April 2018
genome R Metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
0
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0
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873
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News: OmicsLogic Genomics Online Program
dna next-gen alignment genomics
updated 11 months ago by 43k • written 4.8 years ago by ▴ 340
1
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0
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1.4k
views
News: Metagenomics course. 9-13 April 2018
omics Metatranscriptomics metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
0
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0
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679
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News: Training in Molecular Modeling and Molecular Dynamics @NIH,February 18-21,2020
Structural-biology Modeling next-gen
updated 10 months ago by 43k • written 4.3 years ago by ▴ 140
0
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0
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8.8k
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News: 2nd edition: Population Genomics course in Berlin. May 14-18 2018
Population-Genomics Plink R VCFtools
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
0
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0
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1.1k
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News: Training in Data Integration, Analysis and Visualization @NIH,June 4-7,2019
cytoscape ngs biomedical training data-integration
updated 11 months ago by 43k • written 5.1 years ago by ▴ 140
0
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0
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841
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News: Online Live TScourse: Python Machine Learning in Biology (July 20th-24th, 2020)
online-course Python Machine-learning
updated 10 months ago by 43k • written 4.0 years ago by ▴ 70
0
votes
0
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1.0k
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News: Epigenomics Workshop in Berlin (28th May-1st June 2018)
RNA-Seq ChIP-Seq ATAC-seq
updated 11 months ago by 43k • written 6.1 years ago by ★ 2.5k
0
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0
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1.6k
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News: Registration deadline for 2017 CBW bioinformatics workshops is fast approaching
SNP ChIP-Seq Assembly RNA-Seq R
updated 11 months ago by 43k • written 7.1 years ago by ▴ 30
0
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0
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698
views
News: Training in Advanced Transcriptomics (RNA-Seq) Analysis
Transcriptome-analysis RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 4.2 years ago by ▴ 140
0
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0
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68
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News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 16 hours ago by 43k • written 20 hours ago by ★ 2.5k
900 results • Page 4 of 18
Recent Votes
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
biomaRt external_gene_name same entry multiple times when mapping to homolog mouse gene
Converting between Ensembl Versions
Comment: what is the purpose of indexing the reference genome (Kallisto)
Answer: what is the purpose of indexing the reference genome (Kallisto)
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
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Comment: ScRNA data question by starswillfade ▴ 10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question by starswillfade ▴ 10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
Comment: genome assembly records not present in assembly_summary.txt by GenoMax 141k
Can you clarify what `metainfo` you are referring to? The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
Comment: what is the purpose of indexing the reference genome (Kallisto) by i.sudbery 19k
Specifically: If we want to look up all the places where a 31mer is in a genome without and index, we have to compare that 31 to the first…
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File? by benformatics 3.9k
This is way easier to do solely in R now 10 years later. library(GenomicFeatures) library(rtracklayer) ## import GTF…
Answer: what is the purpose of indexing the reference genome (Kallisto) by dsull ★ 5.8k
I'll see if I can explain things in super simple terms (albeit with some abuse of the actual technical details) to provide a conceptual und…
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File? by Jalil Sharif ▴ 80
The updated code in R using rtracklayer for reading a gtf file. https://github.com/jalilsharif/gtf_utr_fix_r/blob/main/gencode_utr_fix_d…
Comment: Rare Disease Variant Pathway Analysis by The_PyPanda ▴ 10
Thank you LauferVA, Your advice has been useful and I now a lot to think about and read. Also, I just wanted to clarify I do not ha…
Comment: CDS vs cDNA vs transcript for mapping RNA-Seq reads by Antonio R. Franco ★ 5.1k
You cannot do it with Kallisto either. In fact, the indexation will fail in attempting to index a genome file
Comment: PCA plot by ATpoint 82k
What is your question? Add details and clarity. Ask a precise question and please avoid opening more questions on the same underlying issue…
Comment: genome assembly records not present in assembly_summary.txt by Joe 21k
If you have the accession numbers can you not use something like `eutils`?
Comment: Create a new bed file with all pairwise combinations between two other bed files by Pierre Lindenbaum 161k
> Next, I tried using bedtools window but in your original post you said > tried finding the intersection of these bed files using bedto…
Comment: How to trim transcripts using information from NCBI contamination screen report by Lada ▴ 30
Thank you very much! I tried it out! This is a handy tool useful for many different applications, and in regards to my problem - although …
Comment: Create a new bed file with all pairwise combinations between two other bed files by J • 0
Thank you for replying Pierre. I first added a third column to the SNP bed file, so that I would get a range of 1 for each SNP awk 'B…
Comment: Create a new bed file with all pairwise combinations between two other bed files by Pierre Lindenbaum 161k
> using bcftools Show us what you tried
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