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News: Google Dataset Search
google
updated 11 months ago by 43k • written 5.7 years ago by 161k
5
votes
3
replies
1.6k
views
News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 13 months ago by 43k • written 6.7 years ago by 142k
5
votes
1
reply
2.9k
views
News: Canadian Bioinformatics Workshops Series Announced For 2014
training
updated 14 months ago by 43k • written 10.4 years ago by 20k
5
votes
1
reply
1.6k
views
News: 2-day WORKSHOP on SNAKEMAKE
next-gen
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.5k
5
votes
1
reply
1.1k
views
News: New biostar-tools metaport for FreeBSD
freebsd software
2.6 years ago by bacon4000 ▴ 80
5
votes
3
replies
2.1k
views
News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen exome variation
updated 14 months ago by 43k • written 11.6 years ago by 11k
5
votes
0
replies
1.8k
views
News: Bioinformatics Contest 2019
bioinforussia bioinfcontest bioinfcontest2019
updated 11 months ago by 43k • written 5.4 years ago by ▴ 50
5
votes
2
replies
1.7k
views
News: #scRNABIO & organoids meeting
single-cell-sequencing microfluidics organoids
updated 11 months ago by 43k • written 5.7 years ago by ▴ 320
5
votes
2
replies
927
views
News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute challenge
updated 11 months ago by 43k • written 4.8 years ago by ▴ 70
4
votes
1
reply
1.9k
views
News: scRNA-seq data analysis Workshop in Berlin
RNA-Seq next-gen
updated 11 months ago by 43k • written 5.5 years ago by ★ 2.5k
4
votes
1
reply
2.3k
views
News: ENCODE Users' Meeting
encode ucsc conference functional-genomics ensembl
updated 21 months ago by 43k • written 8.9 years ago by 23k
4
votes
1
reply
1.4k
views
News: The 1000 Genomes Project Data Portal Beta Release
1000genomes next-gen SNP
updated 13 months ago by 43k • written 8.0 years ago by ★ 1.8k
4
votes
0
replies
1.8k
views
News: Call for Abstracts for the 18th Annual Bioinformatics Open Source Conference (BOSC 2017)
BOSC OBF
updated 12 months ago by 43k • written 7.2 years ago by ★ 2.2k
4
votes
0
replies
1.0k
views
News: SIG Workshop to discuss developments in computational pathology and its interfacing opportunities with bioinformatics during ECCB 2018
microscopy wsi digital-pathology
updated 11 months ago by 43k • written 5.8 years ago by ▴ 40
4
votes
0
replies
2.4k
views
News: 2nd UK Bioinformatics Student Symposium on 7 Oct '15 at TGAC, Norwich
symposium
updated 19 months ago by 43k • written 8.7 years ago by ▴ 100
4
votes
1
reply
1.8k
views
News: NCBI BLAST URL domain changes to take effect December 1, 2014
blast ncbi
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.2k
4
votes
1
reply
657
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 21 months ago by 43k • written 22 months ago by 11k
4
votes
3
replies
1.9k
views
News: Boston Genomics Hackathon (facilitated by NCBI)
NCBI RNA-Seq DNA-seq hackathon
updated 13 months ago by 43k • written 8.1 years ago by ▴ 330
4
votes
0
replies
2.9k
views
News: Wed 9/25 On-Line, Live Tutorial For Integrated Genome Browser
visualization ChIP-seq RNA-seq igv genome-browser
updated 14 months ago by 43k • written 10.6 years ago by ★ 2.4k
4
votes
1
reply
2.1k
views
News: Mark2Cure launches tool to help crowd-source curation of the biomedical literature
crowd-sourcing
updated 16 months ago by 43k • written 9.3 years ago by 20k
4
votes
3
replies
1.9k
views
News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 17 months ago by 43k • written 8.8 years ago by • 0
4
votes
0
replies
2.2k
views
News: Rna-Seq Workshop In Oslo - Seats Available
RNA-seq
updated 14 months ago by 43k • written 10.2 years ago by ▴ 60
4
votes
0
replies
1.5k
views
News: Helen Berman Wins The 2013 Delano Award For Computational Biosciences
delano-award
updated 14 months ago by 43k • written 11.1 years ago by 18k
4
votes
0
replies
1.9k
views
News: Bioinformatics education: biology-inspired bioinformatics with project-based learning
education RNA-seq
updated 11 months ago by 43k • written 6.1 years ago by ▴ 340
4
votes
0
replies
4.0k
views
News: RepurposeDB - A New Reference Database of Drug Repositioning
precision-medicine drug-repositioning
updated 11 months ago by 43k • written 7.2 years ago by 18k
4
votes
0
replies
652
views
News: A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS RNA-Seq single-cell workshop
10 months ago by David Langenberger 11k
4
votes
0
replies
1.5k
views
News: All of Us (NIH) precision medicine research program is now open for enrollment
precision-medicine
updated 11 months ago by 43k • written 6.0 years ago by 142k
4
votes
3
replies
1.1k
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
4
votes
0
replies
6.4k
views
News: The genome Aggregation Database (gnomAD)
gnomAD
updated 12 months ago by 43k • written 7.2 years ago by 161k
4
votes
1
reply
1.9k
views
News: Bioinformatics Contest 2018
contest
updated 11 months ago by 43k • written 6.3 years ago by ▴ 40
4
votes
3
replies
3.3k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 11 months ago by 43k • written 7.1 years ago by ▴ 150
4
votes
5
replies
2.8k
views
News: Kover will provide support via Biostars
kmer kover machine-learning
updated 13 months ago by 43k • written 7.9 years ago by ▴ 90
4
votes
0
replies
1.8k
views
News: Iscb Wikipedia Competition 2013
wikipedia
updated 14 months ago by 43k • written 10.7 years ago by ★ 2.0k
4
votes
3
replies
3.2k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 11 months ago by 43k • written 5.6 years ago by 11k
4
votes
4
replies
1.7k
views
News: VCFclin working group
vcfclin
updated 14 months ago by 43k • written 10.0 years ago by ▴ 30
4
votes
0
replies
912
views
News: The BioCompute Object App-a-thon starts on May 14!
standards computation pipeline
updated 13 months ago by 43k • written 5.0 years ago by ▴ 150
4
votes
3
replies
2.3k
views
News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 14 months ago by 43k • written 11.0 years ago by ▴ 1000
4
votes
0
replies
2.4k
views
News: Upcoming Workshop: Ensembl Perl APIs
ensembl APIs Perl workshops
updated 14 months ago by 43k • written 9.5 years ago by ★ 5.2k
4
votes
0
replies
724
views
News: Call for Bioinformatics Papers - Genes Special Issue
gene
updated 11 months ago by 43k • written 4.3 years ago by ▴ 730
4
votes
0
replies
1.9k
views
News: Viral Bioinformatics and Genomics course August 2017, Glasgow
next-gen
updated 12 months ago by 43k • written 7.2 years ago by ▴ 40
4
votes
2
replies
3.1k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 13 months ago by 43k • written 8.6 years ago by ★ 2.2k
4
votes
2
replies
2.9k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
4
votes
0
replies
3.0k
views
News: New simulation dataset for 'A benchmark for RNA-seq quantification pipelines'
RNA-Seq
updated 13 months ago by 43k • written 7.9 years ago by ★ 2.6k
4
votes
3
replies
1.9k
views
News: How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
ChIP-Seq RNA-Seq
updated 12 months ago by 43k • written 7.3 years ago by ▴ 350
4
votes
0
replies
2.9k
views
News: Python for Scientists - FREE Ebook from O'Reilly
python Data-Analysis
updated 13 months ago by 43k • written 8.6 years ago by ★ 2.2k
4
votes
1
reply
2.2k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 9.8 years ago by ★ 2.0k
4
votes
0
replies
1.2k
views
News: Bioconductor 2016 conference materials available
bioconductor R
updated 13 months ago by 43k • written 7.8 years ago by 26k
4
votes
1
reply
1.2k
views
News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
4
votes
0
replies
1.2k
views
News: Workshop for genomic data visualization and interpretation
R RNA-Seq ggplot2 genomics
updated 11 months ago by 43k • written 5.4 years ago by 19k
4
votes
0
replies
2.4k
views
News: Google Genomics and Broad Institute Team Up to Tackle Genomic Data
google broad gatk
updated 16 months ago by 43k • written 8.9 years ago by ★ 5.3k
1,000 results • Page 5 of 20
Recent Votes
Comment: Help with choosing a model species for Augustus for a de novo assembled genome.
A: After read mapping, count exons or genes?
After read mapping, count exons or genes?
Merging a large number of VCF files
A: Merging a large number of VCF files
A: pulling snps from vcf file using ids
pulling snps from vcf file using ids
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Popular Question to Thanujay S • 0
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Recent Replies
Comment: Segmentation error while using a tool by Thanujay S • 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA by Thanujay S • 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool by Ruqaiya • 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
Comment: filtering before dada2 by GenoMax 142k
> I encountered a significant decrease in the percentage of merged reads. You can check with `bbmerge.sh` from BBMap suite to see how many…
Comment: HCL database download by GenoMax 142k
Isn't the download link available above the plot: http://bis.zju.edu.cn/HCL/data/DGE/Adult-Transverse-Colon1_dge.txt.gz
Comment: fastq screen aligner no specified. by GenoMax 142k
You need to change this configuration file to point it to the location where the aligner executable can be found. So as an example followi…
Answer: Design matrix Differential expression analysis by Gordon Smyth ★ 7.1k
The expression levels do not change but the way that you have parametrized the expression levels does change. The two design matrices give…
Comment: The GDC Legacy Archive is retiring soon. by lcordeiro ▴ 40
Hi Zhenyu, do you happen to know how I can download metadata for some of the legacy files? I downloaded several IDATs from the legacy data …
Answer: Force PLINK2 to neglect chrX as the sex chromosome by chrchang523 10k
(cross-posted from https://groups.google.com/g/plink2-users/c/Qphx_6BpPII ) You need to use --chr-set, not --allow-extra-chr, to specify…
Answer: Easy way to find out which allele is minor allele from bed file? by chrchang523 10k
This question does not make sense. If you care about allele-order "information [being] lost in downstream applications", REF/ALT is the ob…
Answer: visualize GSEA by bk11 ★ 2.4k
I have made some edits in your code basically changing the position of text and commented out the line `data$text_pos <- ifelse(data$NES > …
Comment: Differential Expression Analysis using DESeq2 in R by swbarnes2 14k
Pictures of code are useless. You were told to paste the code and use the 0101 button. Can you explain why you decided not to do that? If…
Comment: Differential Expression Analysis using DESeq2 in R by Erina • 0
![Here is the code I am using for the analysis][1] [1]: /media/images/8a511904-6ae8-47f5-b647-ee15b02b
Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read by swbarnes2 14k
In paired end sequencing, every read has a mate, and the flags all together tell you not only what is up with the read you are looking at, …
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix by Mbofire • 0
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