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906 results • Page 5 of 19
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1.3k
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News: Ensembl Perl API course, April 2018
course api ensembl perl training
updated 11 months ago by 43k • written 6.3 years ago by 23k
1
vote
2
replies
1.7k
views
News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq webinar rna-seq single-cell
updated 11 months ago by 43k • written 5.0 years ago by ▴ 580
1
vote
3
replies
1.2k
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 11 months ago by 43k • written 4.2 years ago by 11k
1
vote
0
replies
985
views
News: NCBI Webinar: New Variation Services for Normalizing, Remapping, and Annotating Variants
Variation dbsnp API SPDI Clinvar
updated 11 months ago by 43k • written 5.3 years ago by ▴ 70
1
vote
0
replies
858
views
News: hackseqRNA: Computational RNA hackathon, Vancouver BC
hackathon RNA
updated 11 months ago by 43k • written 4.2 years ago by ▴ 50
1
vote
0
replies
799
views
News: Announcing the Genetic Engineering Attribution Challenge!
machine-learning data-science competition
updated 10 months ago by 43k • written 3.7 years ago by ▴ 10
1
vote
0
replies
2.2k
views
News: WORKSHOP - Data visualisation and manipulation using Python
RNA-Seq Data-visualisation next-gen gene python
updated 12 months ago by 43k • written 7.2 years ago by ▴ 110
1
vote
0
replies
950
views
News: Paperkast.com - paper discussion and sharing
website
updated 11 months ago by 43k • written 5.7 years ago by ▴ 30
1
vote
1
reply
986
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 17 hours ago by ▴ 40 • written 14 months ago by ★ 1.2k
1
vote
0
replies
166
views
News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
8 weeks ago by David Langenberger 11k
1
vote
0
replies
1.8k
views
News: Data Visualization with Python
next-gen Python
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.5k
1
vote
0
replies
323
views
News: course - Advanced Python Programming
Python-Programming
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
1
vote
2
replies
1.7k
views
News: Workshop: Data analysis in high throughput biology. deadline today (2 places left)
next-gen R RNA-Seq
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.5k
1
vote
0
replies
208
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
7 weeks ago by David Langenberger 11k
1
vote
2
replies
1.0k
views
News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 11 months ago by 43k • written 5.2 years ago by ▴ 30
1
vote
0
replies
708
views
News: Bioinformatics for Precision Oncology 2020 Program
cancer-biology RNA-Seq cancer
updated 11 months ago by 43k • written 4.3 years ago by ▴ 10
1
vote
0
replies
439
views
News: Good bioinformatics training resources
NGS
updated 11 months ago by 161k • written 11 months ago by ▴ 80
1
vote
0
replies
1.3k
views
News: Population Genomics course online
R SNP next-gen
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
1
vote
0
replies
415
views
News: Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow automation pipeline development
7 months ago by David Langenberger 11k
1
vote
1
reply
1.7k
views
News: Bioinformatics for Beginners @NIH, (Bethesda, MD, USA) Feb 13 - 16, 2018
beginners training
updated 11 months ago by 43k • written 6.5 years ago by ▴ 140
1
vote
0
replies
1.4k
views
News: Metagenomics course. 9-13 April 2018
omics Metatranscriptomics metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
1
vote
0
replies
896
views
News: 7th Annual Mendelian Data Analysis Workshop - Learn bioinformatic tools for analysis of exome and genome sequence data for rare diseases.
sequence genome next-gen analysis
updated 11 months ago by 43k • written 5.2 years ago by ▴ 10
1
vote
0
replies
860
views
News: UniProt: Changes to Proteomes
uniprot proteome
updated 11 months ago by 43k • written 4.6 years ago by ★ 2.4k
1
vote
0
replies
917
views
News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
Assembly training RNA-Seq
updated 11 months ago by 43k • written 5.7 years ago by ▴ 140
1
vote
0
replies
623
views
News: Calling Data Scientists and Bioinformaticians for the NHLBI Big Data Challenge Competition
Big-Data Challenge Competition
updated 11 months ago by 43k • written 4.2 years ago by ▴ 10
1
vote
0
replies
1.0k
views
News: BBSRC (UK funding body) Review of data intensive biology in the UK
questionnaire UK
updated 11 months ago by 43k • written 4.9 years ago by 19k
1
vote
0
replies
1.4k
views
News: Advanced Sequencing Technologies & Bioinformatics Analysis Course at CSHL: November 3 - 15, 2020
course sequencing workshop
updated 11 months ago by 43k • written 4.3 years ago by 20k
1
vote
0
replies
1.1k
views
News: Course: Rstats for biologists in Berlin (LAST CALL)
R statistics biologists
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
1
vote
0
replies
437
views
Spam: Research Training in Next-Generation Sequencing Data Analysis.
RNA-Seq ChIP-Seq
updated 10 months ago by 43k • written 3.7 years ago by 10
1
vote
1
reply
942
views
News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection webinar RNA-Seq gene-fusion
updated 11 months ago by 43k • written 4.2 years ago by ▴ 40
1
vote
0
replies
328
views
News: Course - Developing R/Bioconductor Packages for Genomics
R package-development Genomics Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
1
vote
0
replies
196
views
News: Cellosaurus release 48 is available
cell-line biocuration cellosaurus knowledgebase
3 months ago by Amos Bairoch ▴ 120
1
vote
0
replies
720
views
News: Training - Data visualization in R with ggplot2
R Dataviz ggplot2
updated 10 months ago by 43k • written 3.7 years ago by ★ 2.5k
1
vote
0
replies
422
views
News: Spatial Omics course
Spatial-Omics Multiplexed-Image-Analysis
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
1
vote
0
replies
739
views
News: Course: Speciation Genomics in Canada - Quebec City, 2-6 September 2019
snp R next-gen
updated 11 months ago by 43k • written 4.9 years ago by ▴ 40
1
vote
0
replies
2.3k
views
News: Multivariate analysis of ecological communities in R with the VEGAN package (VGNR01)
R
updated 11 months ago by 43k • written 6.1 years ago by ▴ 60
1
vote
2
replies
2.4k
views
News: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics Metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
1
vote
0
replies
999
views
News: Genomic Data Visualization using R
R
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
1
vote
0
replies
1.6k
views
News: Machine Learning and Visualization of High-Throughput Biomedical Data
next-gen-sequencing gene
updated 11 months ago by 43k • written 5.9 years ago by ▴ 10
1
vote
4
replies
2.0k
views
News: webserver of TCGA data www.tcgaportal.org
genome RNA-Seq TCGA gene
updated 11 months ago by 43k • written 5.9 years ago by ▴ 40
1
vote
0
replies
697
views
News: SNAKEMAKE course in Berlin. Last places available
Python
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
1
vote
0
replies
1.2k
views
News: Workshop for Comparative genomics with a focus on structural variation
genome structural-variant
updated 11 months ago by 43k • written 5.1 years ago by 9.7k
1
vote
0
replies
749
views
News: Check out precision FDA's Featured Expert Blog from Dr. Charles Eaton
biomarker Dupytrens genetic crowd-sourcing
updated 11 months ago by 43k • written 5.2 years ago by ▴ 60
1
vote
0
replies
186
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
2 days ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
1.1k
views
News: DataTech19 submission deadline and keynotes: Jared Lander, Mine Cetinkaya-Rundel, Debbie Bard
R data-science HPC python conference
updated 11 months ago by 43k • written 5.5 years ago by ▴ 20
1
vote
0
replies
1.3k
views
News: Bioinformatic Analysis of Next Generation Sequencing Data @NIH
training RNA-Seq next-gen
updated 11 months ago by 43k • written 5.2 years ago by ▴ 140
1
vote
0
replies
207
views
News: Online course - Introduction to Machine Learning in R for omics data
R Omics MachineLearning StatisticalLearning
3 months ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
1.8k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor
Statistics R Metagenomics Bioconductor
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
1
vote
0
replies
834
views
News: Utrecht Bioinformatics Center: online seminars
DNA-damage Utrecht epigenomics
updated 10 months ago by 43k • written 3.9 years ago by ▴ 230
1
vote
0
replies
854
views
News: NCBI BLAST+ 2.14.0 release includes faster protein and translation search options
NCBI BLAST
12 months ago by PeterC_NCBI ▴ 410
906 results • Page 5 of 19
Recent Votes
Answer: Design matrix Differential expression analysis
A: extract dendrogram cluster from pheatmap
extract dendrogram cluster from pheatmap
Answer: Searching for gene in multiple genomes
Comment: RNA velocity for smart-seq2 dataset
Answer: RNA velocity for smart-seq2 dataset
Answer: RNA velocity for smart-seq2 dataset
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Commentator to dsull ★ 6.0k
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Recent Replies
Comment: Design matrix Differential expression analysis by SHN ▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx by vjanve • 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
Comment: creating batch colum for batch correction by Expert ▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction by ATpoint 82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error by Ruqaiya • 0
This the tool still problematic?
Comment: Segmentation error while using a tool by Ruqaiya • 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool by Ruqaiya • 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool by Mensur Dlakic ★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool by Thanujay S • 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA by Thanujay S • 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool by Ruqaiya • 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
Comment: filtering before dada2 by GenoMax 142k
> I encountered a significant decrease in the percentage of merged reads. You can check with `bbmerge.sh` from BBMap suite to see how many…
Comment: HCL database download by GenoMax 142k
Isn't the download link available above the plot: http://bis.zju.edu.cn/HCL/data/DGE/Adult-Transverse-Colon1_dge.txt.gz
Comment: fastq screen aligner no specified. by GenoMax 142k
You need to change this configuration file to point it to the location where the aligner executable can be found. So as an example followi…
Answer: Design matrix Differential expression analysis by Gordon Smyth ★ 7.1k
The expression levels do not change but the way that you have parametrized the expression levels does change. The two design matrices give…
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