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505 results • Page
1 of 11
Sort: replies
Rank
Views
Votes
Replies
3
votes
16
replies
9.9k
views
combining z-scores into a single z-score value
excel
R
statistics
updated 2 hours ago by
Ram
39k • written 4.2 years ago by
Star
▴ 60
0
votes
16
replies
3.2k
views
Gff to genbank - feature is missing
DNA
augustus
gff3
genbank
updated 6 days ago by
Ram
39k • written 5.0 years ago by
rororo
• 0
1
vote
14
replies
2.8k
views
How to convert Haplotypes file to PLINK format data
R
plink
updated 7 days ago by
Ram
39k • written 5.0 years ago by
bha
▴ 80
7
votes
12
replies
840
views
Integrated genes from bulk RNA seq and ATAC seq
bulk-RNA
integrated
ATAC-seq
updated 5 days ago by
Sasha
▴ 180 • written 11 days ago by
Chris
▴ 100
6
votes
12
replies
559
views
Help with error in cellranger
Cellranger
updated 13 days ago by
GenoMax
129k • written 14 days ago by
Chris
▴ 100
0
votes
12
replies
2.9k
views
comparative analysis of two strains of bacteria's genomes
genome
gene
updated 12 days ago by
Ram
39k • written 5.6 years ago by
fonteneaudam
▴ 20
1
vote
10
replies
2.5k
views
How to specify/calculate subject coverage of the alignment (alignment of query[protein sequence] and subject[Nucleotide sequence]) in tBLASTn?
alignment
BLAST
tBLASTn
updated 3 days ago by
Ram
39k • written 4.2 years ago by
Kumar
▴ 100
5
votes
10
replies
412
views
Error when viewing a bam file
samtools
28 days ago by
Chris
▴ 100
1
vote
9
replies
516
views
gene annotation
gtf
gene-annotation
updated 18 days ago by
Ram
39k • written 18 days ago by
ahmad
• 0
6
votes
9
replies
929
views
Error when runing Bowtie2: (ERR): bowtie2-align exited with value 1
BAM
Bowtie
updated 18 days ago by
Ram
39k • written 4 months ago by
luzglongoria
▴ 40
3
votes
9
replies
502
views
Estimate sizes of repeats in a especific Gene
CGG
Fragile-X
12 days ago by
Rafael
▴ 10
1
vote
9
replies
826
views
Couldn't get a file descriptor referring to the console multiqc
multiqc
updated 18 days ago by
Ram
39k • written 11 months ago by
smithkthedale
▴ 10
1
vote
8
replies
511
views
snpeff install error
snpeff
updated 18 days ago by
Ram
39k • written 4 weeks ago by
bestone
▴ 10
4
votes
8
replies
513
views
Error while running nf-core/rnaseq pipeline
nf-core
RNA-seq
7 days ago by
eesha28112001
• 0
3
votes
8
replies
1.7k
views
What is the minimum system requement for oxford nanopore read assembly
Assembly
updated 4 days ago by
Ram
39k • written 4.6 years ago by
nagendranp1991
• 0
2
votes
8
replies
2.6k
views
How to convert a database from protein to nucleotide
blastn
unix
blastx
blast
updated 19 days ago by
Ram
39k • written 6.2 years ago by
AJTrunkskun94
• 0
1
vote
8
replies
855
views
Betacoronavirus.00.nsq error
corona
biostars
updated 15 days ago by
Ram
39k • written 16 months ago by
Sam
• 0
3
votes
8
replies
1.3k
views
Kallisto mapping paired end
Kallisto
mapping
updated 17 days ago by
Ram
39k • written 15 months ago by
Dk
▴ 20
7
votes
7
replies
4.3k
views
RNA-Seq time series analysis using a DESeq2 spline approach yields far too many significant genes
splines
DESeq2
time-series
RNA-Seq
updated 2 hours ago by
Ram
39k • written 4.4 years ago by
stu111538
▴ 80
0
votes
7
replies
567
views
How to test DEGs from microarray data on RNA-seq dataset
microarray
differential
limma
RNA-seq
expression
prediction
24 days ago by
Llander
• 0
5
votes
7
replies
643
views
Are datasets for a unique cells, that downloded using sratoolkit?
RNA-Seq
sequencing
updated 9 days ago by
supernovamik
• 0 • written 3.4 years ago by
ee.mohseni.alert
▴ 50
1
vote
7
replies
5.6k
views
Human reference files in HG38 GATK resource bundle
VCF
updated 10 hours ago by
dare_devil
★ 3.1k • written 5.3 years ago by
win
▴ 940
2
votes
7
replies
1.5k
views
Technology Stack of NCBI (Genbank, GEO, etc.)
sequence
ncbi
gene
genbank
updated 8 days ago by
Ram
39k • written 5.2 years ago by
navela78
▴ 70
0
votes
7
replies
2.2k
views
How much time should be expected for building a database by kraken2-build?
kraken2
updated 17 days ago by
Ram
39k • written 2.3 years ago by
thitrucminh.nguyen
• 0
5
votes
7
replies
878
views
error while using cyvcf2 to parse the vcf file
cyvcf2
vcf
htslib
updated 18 days ago by
Ram
39k • written 12 months ago by
rheab1230
▴ 140
0
votes
7
replies
570
views
fasterq-dump outputs "Cannot use '--ngc' as ngc file."
sra-tools
SRA
command-line
wrapper
updated 24 days ago by
ATpoint
72k • written 26 days ago by
gernophil
▴ 10
6
votes
7
replies
1.4k
views
Bioinformatics Master Project With More Focus on Developing Algorithm and Software
Masters
Algorithm
Software
updated 17 days ago by
Ram
39k • written 6.0 years ago by
nilo
▴ 90
1
vote
7
replies
864
views
Accuracy of Methods for Gene Variant Detection and Quantification: Kallisto Pseudoalignment vs. STAR Alignment
kallisto
STAR
RNA-seq
Transcript_variants
12 days ago by
sohail.mbio
• 0
3
votes
7
replies
1.6k
views
align_and_estimate_abundance error Trinty
align_and_estimate_abundance
RNA-SEQ
RSEM
Trinity
updated 15 days ago by
Ram
39k • written 20 months ago by
Princy
▴ 60
2
votes
6
replies
362
views
Find data-based Gene_IDs for unknown gene_IDs in gtf.file
RNA-SEQ
annotation
GO-term
8 days ago by
Pegasus
▴ 90
0
votes
6
replies
552
views
Heatmap error: 'x' must be a numeric matrix
Heatmap
updated 17 days ago by
Ram
39k • written 16 months ago by
adnan.sabar7865
▴ 20
2
votes
6
replies
532
views
how to make a venn plot with data frame in R
plot
R
Venn
9 days ago by
satva72
• 0
3
votes
6
replies
1.1k
views
how to get total read count, mapped read count and unmapped read count from multiple sam or bam files
RNAseq
PYTHON
R
bash
updated 14 days ago by
Ram
39k • written 2.7 years ago by
Bioinfonext
▴ 430
4
votes
6
replies
417
views
how to plot SV(structural variants) from many assemblies of a given locus
SV
12 days ago by
natalev
▴ 20
6
votes
6
replies
538
views
On "wings" in volcano plots...
DEG
volcano
DGE
statistics
DE
updated 10 days ago by
ATpoint
72k • written 11 days ago by
kalavattam
▴ 120
2
votes
6
replies
999
views
Time series RNA seq design query
RNA-seq
time-series
deseq2
updated 3 hours ago by
Ram
39k • written 18 months ago by
kra277
• 0
0
votes
6
replies
1.0k
views
How do I tell piRNA population suppress TEs in a bed file?
mapping
piRNAs
TEs
updated 5 days ago by
Ram
39k • written 4.8 years ago by
jaqx008
▴ 110
4
votes
6
replies
737
views
Open-Source software. Good or bad for the market?
genomic-analysis
software
updated 10 days ago by
Ram
39k • written 5.2 years ago by
Bioinformatician90
• 0
3
votes
6
replies
1.8k
views
Biopython TimeExceptionError how to handle?
biopython
entrez
updated 12 days ago by
Ram
39k • written 5.6 years ago by
Xylanaser
▴ 80
0
votes
6
replies
319
views
Demultiplexing bam file
demultiplexing
bam_file
Iontorrent
1 day ago by
hasani.iut6
▴ 60
3
votes
6
replies
537
views
Convert Nanopore Fast5 files to Fasta format
fast5
fasta
Nanopore
6 days ago by
Sowmya Pulapet
▴ 30
0
votes
6
replies
645
views
Comparative transcriptomics
rna-seq
comparative
transcriptomics
updated 12 days ago by
Vincent Laufer
★ 2.8k • written 12 months ago by
edus_bioinfo
▴ 20
1
vote
6
replies
564
views
DESeq2
heatmap
R
DESeq2
21 days ago by
Nelo
• 0
0
votes
6
replies
609
views
Getting Error when trying to run hisat2 script! Please help!
hisat2
updated 18 days ago by
Ram
39k • written 11 months ago by
smithkthedale
▴ 10
0
votes
6
replies
200
views
how to create correlation matrix R
pearson-correlation
R
updated 3 hours ago by
GenoMax
129k • written 9 hours ago by
satva72
• 0
4
votes
6
replies
519
views
How to pass from DNA to AA fasta
genetics
updated 8 days ago by
Buffo
★ 2.2k • written 11 days ago by
Anderson Stiward
• 0
1
vote
6
replies
775
views
Trimmomatic FileNotFoundException
trimmomatic
updated 18 days ago by
Ram
39k • written 10 months ago by
awhale01
• 0
6
votes
6
replies
2.6k
views
ChIP-Seq Intensity Analysis
R
ChIP-Seq
updated 12 days ago by
Ram
39k • written 5.5 years ago by
solveforj
▴ 20
0
votes
5
replies
1.4k
views
Best Blast Hits from Tabular Outputs in Multiple files
python
shell
blast
updated 13 days ago by
Ram
39k • written 5.6 years ago by
trini1god
• 0
3
votes
5
replies
423
views
STAR error with a loop
STAR
RNA
transcriptomics
updated 18 days ago by
Ram
39k • written 5 months ago by
luzglongoria
▴ 40
505 results • Page
1 of 11
Recent Votes
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A: Use padj instead of p-value to ploting DE genes using EnhancedVolcano
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Comment: gatk Hardfilter Error
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154k
the formatting is missing in your question. how do you break lines ? did you add a antislash at the end of the lines ? didn't you forgot th…
Comment: Salmon Index
by
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Thank you! I've made the decoy before, but I'm trying to redo it since I believe the first time I completed this incorrectly. The page Salm…
Comment: How to make a dotplot for bulk RNA average expression ?
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@Trivas Thank you very much for your reply. if you don't mind could you share the script. Because its showing the dot in my plot, but I wou…
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Where did you get the data from? which reference build and gene model is it using? There are many versions of TCGA expression data around…
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thank you so much Alex!
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