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432 results • Page
4 of 9
Sort: replies
Rank
Views
Votes
Replies
1
vote
2
replies
305
views
Tumour purity and ploidy estimation
Copy-number
Whole-exome-sequencing
19 days ago by
bp22
▴ 80
0
votes
2
replies
160
views
Longitudinal analysis of subpopulations: which approach is better?
differential-expression
DEG
model
6 days ago by
Lluís R.
★ 1.2k
0
votes
2
replies
236
views
How to detect and visualize ORFs in bacterial genome?
statistics
visualization
ORFs
genome
23 days ago by
marongiu.luigi
▴ 710
2
votes
2
replies
2.6k
views
Pindel Segmentation Fault Error
pindel
updated 1 day ago by
Ruqaiya
• 0 • written 10.2 years ago by
Yuelin
▴ 20
0
votes
2
replies
205
views
What should I consider as FASTA for dataset?
PDB
FASTA
6 days ago by
Nafi
• 0
1
vote
2
replies
1.9k
views
Remove batch effect from exome data
NGS
exome-sequencing
batch-effect
updated 17 days ago by
Ram
43k • written 6.6 years ago by
Alternative
▴ 270
0
votes
2
replies
333
views
Help with understanding the identifier mapping tables in the backend of HUMAnN
metagenomics
metacyc
enzyme
biobakery
humann
22 days ago by
O.rka
▴ 710
0
votes
2
replies
282
views
Regions not clear in VCF
whole-exome
variant-calling
updated 27 days ago by
Ram
43k • written 28 days ago by
priya.bmg
▴ 60
3
votes
2
replies
1.2k
views
DESeq2 design and Batch effects
RNA-Seq
batch-effect
DESeq2
updated 18 days ago by
Ram
43k • written 4.4 years ago by
baldissera152
▴ 10
0
votes
2
replies
563
views
autodockvina
python
python3
autodock
updated 17 days ago by
Ram
43k • written 4 months ago by
iamsmor
• 0
2
votes
2
replies
183
views
Raw counts using stringtie
stringtie
RNA-seq
updated 2 days ago by
GenoMax
142k • written 2 days ago by
ahmad.sajad4541
• 0
0
votes
2
replies
187
views
creating batch colum for batch correction
batch-correction
combat
updated 1 day ago by
Ram
43k • written 1 day ago by
Expert
▴ 10
0
votes
2
replies
346
views
GSEA analysis in R
GSEA
R
Arabidopsis
17 days ago by
Sudip
• 0
1
vote
2
replies
243
views
convert a seurat object to expressionset
Seurat
24 days ago by
Bine
▴ 60
0
votes
2
replies
454
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
16 days ago by
_quantum_girl_
▴ 10
0
votes
1
reply
206
views
Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA2 - where to go from here?
nf-core
16S
amplicon
dada2
ampliseq
updated 2 days ago by
Chris Dean
▴ 390 • written 3 days ago by
sovrappensiero
▴ 90
0
votes
1
reply
198
views
Extracting mutation status from MAF files - TCGA
TCGA
maf
mutation
updated 1 day ago by
Thanujay S
• 0 • written 2 days ago by
yahn
• 0
0
votes
1
reply
2.8k
views
Can't make sva comparison despite very distinct batch effects
sva
batch-effect
updated 18 days ago by
Ram
43k • written 6.2 years ago by
jjrin
▴ 40
0
votes
1
reply
272
views
How to do further funtional analysis of DEG KeggGet output list?
KEGGREST
DESEQ2
RNA-Seq
DEG
27 days ago by
joana.maclean
• 0
0
votes
1
reply
512
views
GAPIT p-value significance threshold
GAPIT
p-value
GWAS
updated 10 days ago by
ginellegrenier
• 0 • written 5 months ago by
Clayton
• 0
1
vote
1
reply
195
views
Failed kmer content
kmer
illumina
ngs
updated 12 days ago by
Ram
43k • written 12 days ago by
Kasturi
• 0
1
vote
1
reply
243
views
Normalize scRNAseq data to housekeeping genes to compare several datasets
RNA-sequencing
housekeeping
Single-cell
normalization
updated 10 days ago by
ATpoint
82k • written 10 days ago by
AaronJaime
• 0
1
vote
1
reply
247
views
Retrieve a % coverage for each transcript
RNA-seq
updated 18 days ago by
Ram
43k • written 18 days ago by
jammydodger123456
▴ 40
1
vote
1
reply
2.7k
views
Plotting a PCA Plot from SVASeq results
pca
ruvseq
sva
svaseq
batch-effect
updated 18 days ago by
Ram
43k • written 6.3 years ago by
jjrin
▴ 40
0
votes
1
reply
1.2k
views
Controlling for batch effect in SNP-based PCA
whole-genome
PCA
batch-effect
SNP
updated 18 days ago by
Ram
43k • written 4.7 years ago by
Ace
▴ 90
0
votes
1
reply
170
views
How to solve this RoseTTAFold colaboratory error?
modeling
Google
Colaboratory
RoseTTAFold
protein
updated 11 days ago by
Mensur Dlakic
★ 27k • written 11 days ago by
benguyarenbeyaz98
• 0
3
votes
1
reply
278
views
how to change the gene header names in a fasta file?
fasta
bioawk
awk
seqkit
updated 23 days ago by
Ram
43k • written 23 days ago by
rj.rezwan
• 0
0
votes
1
reply
542
views
HOMER on AWS
HOMER
updated 2 days ago by
clairechung112
• 0 • written 2.2 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
413
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 17 days ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
0
votes
1
reply
239
views
How do I know whether it is not a failure of ChIPseq data
ChIPseq
updated 27 days ago by
dthorbur
★ 1.9k • written 4 weeks ago by
Herman Einstein
• 0
0
votes
1
reply
292
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 17 days ago by
GenoMax
142k • written 17 days ago by
ycts
• 0
0
votes
1
reply
151
views
filtering before dada2
bbduk
qiime2
dada2
metagenomic
updated 1 day ago by
Ram
43k • written 2 days ago by
Valentina
• 0
0
votes
1
reply
150
views
tbtool
tbtool
updated 13 days ago by
Ram
43k • written 13 days ago by
Raman
• 0
0
votes
1
reply
555
views
Differential Expression Analysis for miRNA
limma
Differential-gene-Expression
miRNA
updated 26 days ago by
Ram
43k • written 3.0 years ago by
Al
• 0
1
vote
1
reply
183
views
Failed to download data from EBI with ascp
EBI
aspera
updated 24 days ago by
GenoMax
142k • written 24 days ago by
biock
▴ 60
0
votes
1
reply
219
views
Pattern of GC content across reads from fastp
multiqc
ddRAD
updated 26 days ago by
GenoMax
142k • written 27 days ago by
jberg
• 0
0
votes
1
reply
26
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
10 minutes ago by
mropri
▴ 150
0
votes
1
reply
141
views
Displaced fragment length distribution in ATAC-seq
ATAC-seq
nucleosome
fragment
updated 13 days ago by
ATpoint
82k • written 13 days ago by
enanoide
• 0
1
vote
1
reply
482
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
16 days ago by
renan.igor
• 0
1
vote
1
reply
664
views
Save experiment with batch effects - Protein microarray
statistics
protein-array
batch-effect
updated 18 days ago by
Ram
43k • written 4.4 years ago by
s.lima.diogenes
▴ 10
0
votes
1
reply
1.3k
views
About BatchQC packages error
Batch-effect
R
updated 18 days ago by
Ram
43k • written 6.1 years ago by
Jun
• 0
0
votes
1
reply
173
views
unable to get feature count results
featureCounts
updated 5 days ago by
Ram
43k • written 5 days ago by
Ravita
• 0
0
votes
1
reply
309
views
Sheep-Human ortholog mapping with BioMart and Orthogene/Gprofiler
ortholog
sheep
updated 27 days ago by
Shuang He
• 0 • written 4 months ago by
Michael
• 0
0
votes
1
reply
585
views
Basic stats in hierfstat
Fst
stats
hierfstat
updated 3 days ago by
mdav
• 0 • written 18 months ago by
Zoe
• 0
0
votes
1
reply
144
views
Provean help
variant
Provean
updated 3 days ago by
Mensur Dlakic
★ 27k • written 3 days ago by
Arun Sai Kumar
• 0
0
votes
1
reply
241
views
Design matrix after RUVg correction
limma
ruvseq
differential-expression
updated 26 days ago by
Ram
43k • written 12 weeks ago by
Shaimaa Gamal
▴ 10
1
vote
1
reply
257
views
RNA seq normalization and gene gene correlation
rna-seq
pearson-correlation
vst
updated 23 days ago by
Ram
43k • written 23 days ago by
Fish
• 0
0
votes
1
reply
154
views
fastq screen aligner no specified.
BWA
Bowtie2
FastqScreen
updated 1 day ago by
GenoMax
142k • written 2 days ago by
Ximena
• 0
2
votes
1
reply
966
views
How to evaluate the performance of an RNA-seq pipeline
Differential-gene-expression
RNA-Seq
R
DESeq2
updated 26 days ago by
Ram
43k • written 4.0 years ago by
nhaus
▴ 310
0
votes
1
reply
214
views
Finding batch and outlayers
Pca
updated 6 days ago by
christopher medway
▴ 460 • written 6 days ago by
Tigran
• 0
432 results • Page
4 of 9
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if I understood correctly, I might need fle `prot.accession2taxid.gz` file? According to the [documentation][1] in column 2 is Accession.ve…
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To follow on Mathew's reply, one way might be to try and see if you can download and install the package tarball locally: 1. Get the packag…
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God bless you man.
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