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4
votes
9
replies
6.5k
views
8 follow
Extract gene names from annotated vcf file
sequencing next-gen
updated 5.0 years ago by ▴ 230 • written 6.2 years ago by ▴ 240
5
votes
2
replies
2.3k
views
Integrating EHR data with genomic data
sequencing
updated 5.1 years ago by 87k • written 5.1 years ago by ▴ 240
0
votes
0
replies
736
views
How to compile a list of non-cancerous mutations
next-gen sequencing cancer
5.2 years ago by Gene_MMP8 ▴ 240
0
votes
0
replies
957
views
Strand information for cancer variants from COSMIC
snp genome COSMIC
5.2 years ago by Gene_MMP8 ▴ 240
2
votes
5
replies
1.2k
views
Significance of motifs around mutations
Assembly R
updated 5.3 years ago by 12k • written 5.3 years ago by ▴ 240
3
votes
3
replies
856
views
Over- or under-represented motifs in coding regions
R snp
5.3 years ago by Gene_MMP8 ▴ 240
8
votes
6
replies
1.4k
views
Regular expression to extract mutations type
R regex
updated 5.3 years ago by ★ 1.3k • written 5.3 years ago by ▴ 240
11
votes
11
replies
1.9k
views
Randomly sample motifs from reference sequence
genome Assembly
updated 5.3 years ago by ★ 3.4k • written 5.3 years ago by ▴ 240
3
votes
4
replies
898
views
Extract strand information from ENSEMBL
gene SNP ensembl
updated 5.3 years ago by 23k • written 5.3 years ago by ▴ 240
2
votes
1
reply
1.2k
views
What is the significance of this file in COSMIC database?
SNP genome next-gen
5.6 years ago by Gene_MMP8 ▴ 240
4
votes
8
replies
5.6k
views
Error while downloading data from database[EGA]
next-gen sequencing
updated 5.6 years ago by ▴ 390 • written 6.1 years ago by ▴ 240
1
vote
1
reply
1.2k
views
Mice driver mutations
mice genome driver mutaions
updated 5.7 years ago by ▴ 90 • written 5.7 years ago by ▴ 240
3
votes
3
replies
1.3k
views
Flanking sequences around cancer variants
genome snp cancer_variants
updated 5.7 years ago by ★ 16k • written 5.7 years ago by ▴ 240
0
votes
1
reply
1.2k
views
MuSiC2 bmr calculation
music2 sequencing
updated 5.7 years ago by 43k • written 5.7 years ago by ▴ 240
2
votes
2
replies
1.2k
views
Which are the regulatory regions among the following?
assembly sequencing
updated 5.7 years ago by ★ 16k • written 5.7 years ago by ▴ 240
0
votes
1
reply
931
views
Error downloading MuSiC2
music2 sequencing ngs software error
updated 5.7 years ago by 142k • written 5.7 years ago by ▴ 240
0
votes
0
replies
754
views
Identifying driver mutations in mice cancer data
Assembly sequencing genome snp
5.7 years ago by Gene_MMP8 ▴ 240
2
votes
4
replies
916
views
Abundance of thymine base in the neighborhood of breast cancer mutations
genome SNP sequence
5.8 years ago by Gene_MMP8 ▴ 240
8
votes
12
replies
1.9k
views
Correct statistical test to determine the significance of nucleotides present
R sequence next-gen
updated 5.8 years ago by 87k • written 5.8 years ago by ▴ 240
7
votes
6
replies
2.4k
views
Percentage of bases in a fasta sequence
sequencing
updated 5.8 years ago by 82k • written 5.8 years ago by ▴ 240
3
votes
2
replies
1.2k
views
Find out over-represented nucleotides
R sequencing assembly
updated 5.8 years ago by 35k • written 5.8 years ago by ▴ 240
1
vote
1
reply
814
views
Database containing the importance of a DNA sequence
alignment sequencing
updated 5.8 years ago by 35k • written 5.8 years ago by ▴ 240
4
votes
5
replies
4.0k
views
BCFtools consensus sequence
next-gen
updated 3.0 years ago by 87k • written 5.9 years ago by ▴ 240
3
votes
8
replies
2.1k
views
COSMIC to Ensembl mapping
Assembly next-gen cosmic ensembl
updated 5.9 years ago by 23k • written 5.9 years ago by ▴ 240
1
vote
4
replies
1.7k
views
Warning while finding bcftools consensus
next-gen sequencing Assembly
updated 2.8 years ago by 87k • written 5.9 years ago by ▴ 240
4
votes
1
reply
1.3k
views
Difference in chromosome numbering
R next-gen bedtools fasta
updated 5.9 years ago by 11k • written 5.9 years ago by ▴ 240
0
votes
0
replies
910
views
Similarity between reference files
assembly sequencing
updated 6.0 years ago by 142k • written 6.0 years ago by ▴ 240
0
votes
5
replies
1.8k
views
What does this following maf column mean?
R sequencing
6.0 years ago by Gene_MMP8 ▴ 240
1
vote
5
replies
2.4k
views
Fastq file size after splitting bam
software error sequencing
updated 6.0 years ago by ★ 2.9k • written 6.1 years ago by ▴ 240
3
votes
9
replies
1.6k
views
Extract neighbourhoods of mutations
next-gen sequencing
6.0 years ago by Gene_MMP8 ▴ 240
0
votes
2
replies
1.3k
views
Identify driver mutations instead of genes
gene Assembly sequencing
updated 6.0 years ago by ▴ 380 • written 6.0 years ago by ▴ 240
2
votes
9
replies
1.3k
views
Finding cancer gene sequences
sequencing next-gen
updated 6.0 years ago by 142k • written 6.0 years ago by ▴ 240
4
votes
14
replies
2.8k
views
Remove singletons from bam
sequencing next-gen
updated 6.1 years ago by 43k • written 6.1 years ago by ▴ 240
0
votes
4
replies
1.2k
views
Validating driver genes
rna-seq next-gen
6.1 years ago by Gene_MMP8 ▴ 240
1
vote
6
replies
1.8k
views
Trimmomatic usage issue
next-gen sequencing
updated 6.1 years ago by ★ 2.5k • written 6.1 years ago by ▴ 240
4
votes
11
replies
4.9k
views
Quality control for bam files
next-gen sequencing
updated 6.1 years ago by 43k • written 6.1 years ago by ▴ 240
2
votes
5
replies
2.5k
views
Annotate merged vcfs
sequencing next-gen
updated 6.2 years ago by 142k • written 6.2 years ago by ▴ 240
6
votes
19
replies
2.1k
views
Finding driver genes from a cancer dataset
Assembly sequencing
updated 6.2 years ago by 87k • written 6.2 years ago by ▴ 240
5
votes
3
replies
13k
views
Update samtools to the latest version
sequencing next-gen
updated 6.2 years ago by 104k • written 6.2 years ago by ▴ 240
3
votes
6
replies
8.0k
views
Checking bam quality
sequence alignment
updated 6.2 years ago by 7.1k • written 6.2 years ago by ▴ 240
1
vote
4
replies
977
views
Size of cancer/normal sequence data
next-gen sequencing
updated 6.2 years ago by 104k • written 6.2 years ago by ▴ 240
0
votes
0
replies
1.1k
views
Downloadin EGA data
Assembly sequence next-gen
6.3 years ago by Gene_MMP8 ▴ 240
0
votes
4
replies
1.6k
views
Problem with downloading cancer data
genome
6.3 years ago by Gene_MMP8 ▴ 240
3
votes
3
replies
1.8k
views
Accessing controlled cancer data
genome
updated 6.4 years ago by 87k • written 6.4 years ago by ▴ 240
1
vote
8
replies
3.5k
views
Finding mutations from bam files
next-gen sequencing
updated 6.5 years ago by ★ 2.1k • written 6.5 years ago by ▴ 240
0
votes
3
replies
3.8k
views
ICGC data download
next-gen
6.7 years ago by Gene_MMP8 ▴ 240
1
vote
5
replies
2.7k
views
Position of reads in a bam file
next-gen alignment
updated 6.7 years ago by 16k • written 6.7 years ago by ▴ 240
3
votes
6
replies
1.0k
views
Probability of having same starting base on complementary strands
sequence
updated 6.7 years ago by 104k • written 6.7 years ago by ▴ 240
2
votes
7
replies
1.6k
views
ICGC control sample
next-gen
updated 6.7 years ago by ★ 5.2k • written 6.7 years ago by ▴ 240
0
votes
3
replies
1.2k
views
p value notation
R genome
updated 6.9 years ago by 100k • written 6.9 years ago by ▴ 240
107 results • Page 2 of 3
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