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3
votes
2
replies
817
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Request for Bioinformatics Workstation Configuration for Bacterial Whole Genome Analysis?
Bacterial Workstation Whole genome AMR
updated 11 months ago by ★ 2.9k • written 12 months ago by ▴ 80
0
votes
0
replies
501
views
Pathway analysis of Bacteria from denovo genome assembly
KEGG-KASS WGS Pathway denovo
updated 18 months ago by 45k • written 18 months ago by ▴ 80
0
votes
0
replies
889
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers TRINITY
18 months ago by mathavanbioinfo ▴ 80
0
votes
1
reply
923
views
What alternative method would recommend for conducting gene ontology analysis?
WEGO gene-ontology
updated 19 months ago by ★ 3.1k • written 19 months ago by ▴ 80
1
vote
3
replies
1.5k
views
Can shotgun metagenome approaches effectively target both RNA and DNA viruses in low-viral-load water samples?
RNA-virus binning metagenome abundance shotgun
updated 19 months ago by ▴ 650 • written 19 months ago by ▴ 80
0
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0
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1.5k
views
Comment: Comment: Can shotgun metagenome approaches effectively target both RNA and DNA viruses in
19 months ago by mathavanbioinfo ▴ 80
4
votes
1
reply
1.5k
views
why there is an asterisk symbol at the end of each proteins sequences of fasta files in the Braker3 output?
gtf breaker3 protein-seq
19 months ago by mathavanbioinfo ▴ 80
4
votes
4
replies
1.3k
views
Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
illumina RNA-seq paired-end
updated 20 months ago by 22k • written 20 months ago by ▴ 80
0
votes
0
replies
539
views
Gene Prediction Breaker3
prediction protein-seq GTF Breaker3 gene
20 months ago by mathavanbioinfo ▴ 80
1
vote
1
reply
1.2k
views
What is the data requirement for shotgun metagenome analysis of soil samples from plastic land-filling, coal mining, and petroleum oil refineries fie…
shotgun-metagenome species-level binning gtdbk data-requirement
updated 21 months ago by 154k • written 21 months ago by ▴ 80
0
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1
reply
1.4k
views
Comment: Comment: how to download BF ,CC and MF
21 months ago by mathavanbioinfo ▴ 80
0
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0
replies
2.6k
views
Comment: Comment: How to visualize multiple bacterial genomes with circos?
21 months ago by mathavanbioinfo ▴ 80
1
vote
1
reply
730
views
Genome Analysis Insights: BUSCO Evaluation of Repetitive Elements and Ploidy Level in Crocus sativus"
coverage ploidy complex-genome BUSCO
updated 21 months ago by 45k • written 21 months ago by ▴ 80
2
votes
3
replies
1.9k
views
How to identify the 300 kb upstream and downstream genes of lncRNAs?
RNA-Seq lncRNA target genes upstream downstream
updated 23 months ago by • 0 • written 4.9 years ago by ▴ 80
0
votes
1
reply
920
views
How to remove cloning vector sequence from bacterial assembled genome?
assembly removal bacterial genome vector
updated 2.4 years ago by 154k • written 2.4 years ago by ▴ 80
3
votes
2
replies
1.6k
views
How interpret question mark symbol strand column in GFF file?
GFF transcriptome
updated 2.9 years ago by 15k • written 2.9 years ago by ▴ 80
2
votes
1
reply
848
views
How to run phylogeny for genome assembly file?
phylogenetic tree Phylogeny assembly genome
updated 3.1 years ago by ★ 30k • written 3.1 years ago by ▴ 80
1
vote
2
replies
956
views
How to download all fungal virulence proteins from UniProt?
protein blast fungi uniprot
updated 2.6 years ago by 45k • written 3.2 years ago by ▴ 80
1
vote
1
reply
1.1k
views
Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
DEG lncRNA
updated 3.3 years ago by ★ 2.0k • written 3.3 years ago by ▴ 80
0
votes
0
replies
582
views
How to merge the pair end sample for GBS analysis in TASSEL software?
GBS plot GAPPIT
updated 3.5 years ago by 9.0k • written 3.5 years ago by ▴ 80
1
vote
1
reply
1.1k
views
Subread FeatureCounts produces zero percent successfull alignment
zero subread featrureCounts alignment
updated 3.8 years ago by 9.0k • written 3.8 years ago by ▴ 80
0
votes
1
reply
1.4k
views
Unable to download kraken2 database
databaase kraken2 metagenome
updated 3.9 years ago by 154k • written 3.9 years ago by ▴ 80
0
votes
0
replies
739
views
How to remove the isoform in the trasncript.fa file from salmon output?
transcript salmon denovo assembly
updated 3.9 years ago by 90k • written 3.9 years ago by ▴ 80
0
votes
1
reply
1.9k
views
How to calculate phred score of fastq files?
linux phred fastq
updated 4.1 years ago by 154k • written 4.1 years ago by ▴ 80
0
votes
2
replies
1.4k
views
How to download all the genome fasta file for plants?
standalone blast
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by ▴ 80
0
votes
0
replies
3.7k
views
Comment: Comment: How to check if a Fastq file is contaminated with other strains?
4.3 years ago by mathavanbioinfo ▴ 80
0
votes
0
replies
686
views
How to add enzyme details in Tassel pipeline?
GBS Tassel GBSEnzyme.java
updated 4.2 years ago by 5.9k • written 4.3 years ago by ▴ 80
4
votes
7
replies
4.4k
views
How to move the files from sub folder and sub-sub folders into one other folder?
bash
updated 2.6 years ago by 45k • written 4.4 years ago by ▴ 80
1
vote
1
reply
2.3k
views
what is the meaning of --dta paremeter used in the Hisat2 alignment?
Hisat2
updated 4.4 years ago by 45k • written 4.4 years ago by ▴ 80
0
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1
reply
1.4k
views
Comment: Comment: extract the ids and key values
4.4 years ago by mathavanbioinfo ▴ 80
0
votes
4
replies
1.4k
views
extract the ids and key values
extract grep
updated 4.4 years ago by 9.3k • written 4.4 years ago by ▴ 80
0
votes
0
replies
2.9k
views
Comment: Comment: How to generate GTF file from BLAST output?
4.4 years ago by mathavanbioinfo ▴ 80
6
votes
6
replies
2.9k
views
How to generate GTF file from BLAST output?
GTF
4.4 years ago by mathavanbioinfo ▴ 80
0
votes
0
replies
2.9k
views
Comment: Comment: How to generate GTF file from BLAST output?
4.4 years ago by mathavanbioinfo ▴ 80
0
votes
1
reply
972
views
Where to get the human mitochondiral reference genome?
GTF human genome mitochondiral
updated 4.4 years ago by 154k • written 4.4 years ago by ▴ 80
3
votes
4
replies
2.2k
views
Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antisense regions of the genome?
GTF featureCounts NGS GFF
updated 4.4 years ago by 22k • written 4.4 years ago by ▴ 80
0
votes
1
reply
1.2k
views
How to view large PPI network in STRING database?
PPI large network STRING
updated 4.4 years ago by 27k • written 4.4 years ago by ▴ 80
0
votes
1
reply
2.2k
views
Comment: Comment: Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antise
4.4 years ago by mathavanbioinfo ▴ 80
0
votes
3
replies
1.9k
views
How can I get three letter organism code for cavia porcellus?
GO three KEGG
updated 4.5 years ago by 7.6k • written 4.5 years ago by ▴ 80
0
votes
1
reply
1.5k
views
Comment: Comment: Where I can get the gtf file of antheraea mylitta
4.5 years ago by mathavanbioinfo ▴ 80
5
votes
3
replies
1.5k
views
Where I can get the gtf file of antheraea mylitta
GTF
updated 4.5 years ago by 16k • written 4.5 years ago by ▴ 80
0
votes
0
replies
855
views
Extracting the genes associated drugs?
bank Drug
4.5 years ago by mathavanbioinfo ▴ 80
4
votes
5
replies
4.0k
views
How to download entire human protein sequences from RefSeq database hrough command line?
Refseq programming
updated 4.6 years ago by ★ 3.9k • written 4.6 years ago by ▴ 80
2
votes
2
replies
1.1k
views
How to handle "perbase quality failed" issue?
RNA-Seq fastqc
4.9 years ago by mathavanbioinfo ▴ 80
4
votes
6
replies
4.7k
views
How to perform the lncRNA enrichment analysis?
lncRNA enrichment gene ontology
updated 4.9 years ago by ▴ 180 • written 5.0 years ago by ▴ 80
2
votes
1
reply
1.4k
views
How to extract upstream and downstream of lncRNA in particular range?
RNA-Seq lncRNA hommer bed gtf
updated 5.0 years ago by ▴ 480 • written 5.0 years ago by ▴ 80
0
votes
1
reply
4.7k
views
Comment: A: How to perform the lncRNA enrichment analysis?
5.0 years ago by mathavanbioinfo ▴ 80
1
vote
1
reply
1.1k
views
How to find the gene name and classification using Ensembl ID?
genome ensembl lncRNA
updated 5.0 years ago by 27k • written 5.0 years ago by ▴ 80
0
votes
0
replies
1.6k
views
Comment: C: How create annotation file for WGCNA for RNA-Seq data?
5.4 years ago by mathavanbioinfo ▴ 80
1
vote
2
replies
1.6k
views
How create annotation file for WGCNA for RNA-Seq data?
RNA-Seq WGCNA Annotaion file
updated 5.4 years ago by 89k • written 5.4 years ago by ▴ 80
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