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Showing :
questions
4
votes
4
replies
5.5k
views
How to obtain distinct/uniqe rows from GenomicRanges object
R
GenomicRanges
bioconductor
updated 4 months ago by
Ram
43k • written 4.9 years ago by
gundalav
▴ 380
3
votes
3
replies
681
views
How reliable is Alphafold2 for folding random-coil peptide
alphafold2
peptide
protein
updated 2.1 years ago by
Mensur Dlakic
★ 27k • written 2.1 years ago by
gundalav
▴ 380
3
votes
2
replies
774
views
How to recover gene expression used for scran::pairwiseTTests()
scran
singlecell
rnaseq
2.2 years ago by
gundalav
▴ 380
0
votes
0
replies
883
views
How to interpret scRNA-Seq cell dynamics from scVelo and CytoTrace results
velocyto
cell
cytotrace
rnaseq
dynamics
2.8 years ago by
gundalav
▴ 380
0
votes
0
replies
463
views
How to show that one docking is better than another with Pymol visually
docking
structure
pymol
pdb
2.9 years ago by
gundalav
▴ 380
0
votes
1
reply
812
views
Which error bar to use to show gene expression from single-cell RNAseq data
expression
rnaseq
statistics
gene
single-cell
2.9 years ago by
gundalav
▴ 380
2
votes
1
reply
1.6k
views
Appropriate statistical test for comparing two samples in single-cell RNAseq
monocle3
expression
differential
single-cell
rna-seq
updated 2.9 years ago by
ATpoint
82k • written 2.9 years ago by
gundalav
▴ 380
0
votes
0
replies
514
views
How to calculate RMSD and binding energy from the already docked ligand-receptor
python
protein
docking
pdb
structure
2.9 years ago by
gundalav
▴ 380
4
votes
1
reply
2.0k
views
How to tell if enrichment is good or bad from GSEA plot
genes
gsea
enrichment
updated 2.9 years ago by
Kevin Blighe
88k • written 2.9 years ago by
gundalav
▴ 380
0
votes
0
replies
880
views
Programmatically adding hydrogen and remove water to multiple PDB files
docking
pdb
python
structure
2.9 years ago by
gundalav
▴ 380
6
votes
5
replies
1.2k
views
On whether or not to normalize scRNAseq expression like qPCR
single-cell
qpcr
rnaseq
updated 2.9 years ago by
i.sudbery
19k • written 2.9 years ago by
gundalav
▴ 380
13
votes
12
replies
1.9k
views
How to determine reasonable expression threshold for of a gene from scRNAseq to imply its biological significance
statistics
single-cell
rnaseq
2.9 years ago by
gundalav
▴ 380
1
vote
1
reply
1.4k
views
How to tell if our ligand-protein docking is good from AutoDock Vina's result
protein-structure
vina
autodock
docking
pdb
updated 2.9 years ago by
Mensur Dlakic
★ 27k • written 2.9 years ago by
gundalav
▴ 380
1
vote
2
replies
1.6k
views
How to extract subset of protein structure (PDB format) file based on a subsequence of protein
protein
pdb
python
r
updated 2.9 years ago by
jgreener
▴ 390 • written 2.9 years ago by
gundalav
▴ 380
0
votes
0
replies
1.3k
views
Filtering criteria for selecting DEGs from Monocle3 regression analysis with categorical terms
RNA-Seq
monocle
differential-expression
4.4 years ago by
gundalav
▴ 380
1
vote
1
reply
1.1k
views
How to remove the squished track in Give AlignmentTrack()
RNA-Seq
updated 5.0 years ago by
kathka
▴ 30 • written 5.9 years ago by
gundalav
▴ 380
6
votes
6
replies
7.8k
views
How to add RG tag into the optional field in a BAM file
sequencing
single-cell
bam
samtools
updated 5.9 years ago by
finswimmer
16k • written 6.0 years ago by
gundalav
▴ 380
16
votes
10
replies
21k
views
7 follow
Creating Barplot With Horizontal Marker And Asterisks For Biological Paper
plot
r
updated 6.3 years ago by
rita801030
▴ 10 • written 10.6 years ago by
gundalav
▴ 380
3
votes
1
reply
3.9k
views
How to show all columns after performing GenomicRanges::subsetByOverlaps
R
bioconductor
genomicrange
gwas
updated 6.5 years ago by
Sean Davis
26k • written 6.5 years ago by
gundalav
▴ 380
5
votes
2
replies
3.4k
views
Can or should we perform feature counting with `bedtools intersect -c`?
bedtools
rna-seq
featureCounts
6.7 years ago by
gundalav
▴ 380
11
votes
4
replies
5.2k
views
How to recover treated/control count from DESeq2 output
RNA-Seq
DSeq2
updated 7.1 years ago by
Benn
8.3k • written 7.1 years ago by
gundalav
▴ 380
4
votes
17
replies
11k
views
How to calculate RPKM from featureCounts output
RNA-Seq
updated 7.2 years ago by
James Ashmore
★ 3.4k • written 7.2 years ago by
gundalav
▴ 380
2
votes
5
replies
1.9k
views
Problem Converting BAM to SAM on to Amazon-S3 Using Samtools
samtools
amazon-web-services
amazon-ec2
amazon-s3
updated 7.2 years ago by
Devon Ryan
104k • written 7.2 years ago by
gundalav
▴ 380
4
votes
4
replies
5.9k
views
TrimGalore parameter form Nextera paired-end reads adapter removal
adapter
sequencing
illumina
trimming
nextera
updated 7.3 years ago by
Devon Ryan
104k • written 7.3 years ago by
gundalav
▴ 380
3
votes
6
replies
4.6k
views
Why mapping rate is low after adapter trimming paired-end data?
sequencing
alignment
adapter
cutadapt
trim_galore
updated 7.3 years ago by
dariober
14k • written 7.3 years ago by
gundalav
▴ 380
4
votes
6
replies
2.3k
views
How Useful Is Non-Mapping Based Reads Classification?
next-gen
classification
alignment
mapping
cancer
updated 7.4 years ago by
Biostar
20 • written 11.5 years ago by
gundalav
▴ 380
0
votes
1
reply
1.8k
views
Mirna Disease Annotated Corpus
annotation
updated 14 months ago by
Ram
43k • written 10.8 years ago by
gundalav
▴ 380
2
votes
4
replies
2.7k
views
How to obtain insert sequence from paired-end mapping result (SAM/BAM)
RNA-Seq
bowtie2
alignment
samtools
updated 7.7 years ago by
Fabio Marroni
★ 3.0k • written 7.7 years ago by
gundalav
▴ 380
1
vote
1
reply
1.8k
views
Method to detect gene co-expression of genomic feature in cell lineage
microarray
clustering
RNA-Seq
updated 16 months ago by
Ram
43k • written 8.9 years ago by
gundalav
▴ 380
0
votes
1
reply
2.1k
views
Your Favorite Mirna-Gene Concordance Database Resource
gene-annotation
mirna
updated 14 months ago by
Ram
43k • written 11.3 years ago by
gundalav
▴ 380
1
vote
1
reply
2.2k
views
Non-Immune cell type gene expression database
database
updated 10.0 years ago by
Sukhi Singh
11k • written 10.0 years ago by
gundalav
▴ 380
19
votes
9
replies
5.7k
views
6 follow
Best Practice For Extracting Gene Names From Pubmed Abstracts
pubmed
updated 10.2 years ago by
Pierre Lindenbaum
161k • written 11.3 years ago by
gundalav
▴ 380
4
votes
1
reply
3.0k
views
Ways To Do Gene Ontology Analysis For Microarray Data
go
ontology
microarray
affymetrix
updated 10.2 years ago by
Biostar
20 • written 10.5 years ago by
gundalav
▴ 380
2
votes
3
replies
4.9k
views
Immune System Specific Gene Ontology Source
ontology
updated 10.3 years ago by
pld
5.1k • written 11.2 years ago by
gundalav
▴ 380
9
votes
6
replies
4.7k
views
Best Way To Measure Mirna-Seq Abundance
mirna
ngs
sequencing
updated 10.3 years ago by
support
▴ 650 • written 10.3 years ago by
gundalav
▴ 380
10
votes
4
replies
3.9k
views
Summarizing Mirna-Seq Data Based On Ucsc Hg19 Alignment Results
mirna
alignment
genome
expression
updated 10.3 years ago by
Biostar
20 • written 10.3 years ago by
gundalav
▴ 380
1
vote
1
reply
2.4k
views
How To Get Split-Reads From Breakdancer Output
structural
variation
genome
alignment
updated 10.3 years ago by
ernfrid
▴ 400 • written 10.3 years ago by
gundalav
▴ 380
0
votes
0
replies
1.5k
views
Dealing With Probes With High Fold Change But Pa Call 0
microarray
affymetrix
10.4 years ago by
gundalav
▴ 380
2
votes
3
replies
3.3k
views
How To Identify Tissue Specific Genes From Mixed Samples In Microarray Data
microarray
database
mouse
affymetrix
updated 10.7 years ago by
pld
5.1k • written 10.7 years ago by
gundalav
▴ 380
6
votes
7
replies
7.0k
views
Converting Affymetrix (*_At) Mouse Probe Id To Hugo Gene Symbol In R
bioconductor
gene
biomart
r
updated 10.7 years ago by
Sirus
▴ 820 • written 10.7 years ago by
gundalav
▴ 380
3
votes
5
replies
5.3k
views
How To Embed Ucsc Genome Browser To Web Page
ucsc
browser
genomics
web
updated 10.9 years ago by
Michael
54k • written 10.9 years ago by
gundalav
▴ 380
0
votes
3
replies
3.0k
views
How To Make Cytoscape Export Network In Cluster Format (Non-Sif)
network
cytoscape
11.1 years ago by
gundalav
▴ 380
1
vote
1
reply
1.8k
views
How To Use Find Gene Network Of A Species Without Existing Gene Annotation
gene
network
updated 11.1 years ago by
Biojl
★ 1.7k • written 11.1 years ago by
gundalav
▴ 380
6
votes
2
replies
4.4k
views
How To Remove Noise In Microarray Data?
microarray
r
updated 11.1 years ago by
David
▴ 740 • written 11.1 years ago by
gundalav
▴ 380
3
votes
3
replies
5.4k
views
Visualizing Up/Down Regulation Of Genes Based On Fold Change
visualization
gene
microarray
updated 11.2 years ago by
Ying W
★ 4.2k • written 11.2 years ago by
gundalav
▴ 380
22
votes
8
replies
16k
views
6 follow
How To Compute Gene Enrichment P-Value? (Significantly More Than Expected)
enrichment
statistics
updated 2.7 years ago by
Elio
• 0 • written 11.2 years ago by
gundalav
▴ 380
5
votes
5
replies
2.7k
views
Normalization And Differential Expression From Array With Small Samples
microarray
normalization
updated 11.3 years ago by
vibhanim.21
▴ 40 • written 11.3 years ago by
gundalav
▴ 380
47 results • Page
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