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15
votes
8
replies
11k
views
9 follow
Combining Microarray and RNAseq data
RNA-Seq normalization R microarray
updated 6 months ago by ▴ 30 • written 8.5 years ago by ★ 1.2k
17
votes
15
replies
31k
views
9 follow
Mapping Mouse gene names to Human gene names
RNA-Seq PDX
updated 17 months ago by 43k • written 8.9 years ago by ★ 1.2k
6
votes
6
replies
8.6k
views
Merge vcf files from Multiple Samples
vcftools vcf
updated 2.4 years ago by • 0 • written 10.0 years ago by ★ 1.2k
6
votes
6
replies
4.3k
views
Clustering of genes using FPKM
RNA-Seq clustering FPKM R bioconductor
updated 3.6 years ago by 3.2k • written 9.4 years ago by ★ 1.2k
1
vote
7
replies
7.1k
views
6 follow
Using Samtools mpileup with Varscan
next-gen RNA-Seq varscan samtools
updated 18 months ago by 43k • written 8.8 years ago by ★ 1.2k
3
votes
2
replies
2.3k
views
Validating Predictions Of Small Insertions / Deletions
gatk variant
updated 4.3 years ago by 20 • written 10.2 years ago by ★ 1.2k
22
votes
45
replies
13k
views
9 follow
Tool to separate human and mouse rna seq reads
RNA-Seq next-gen-sequencing
updated 15 months ago by 43k • written 9.0 years ago by ★ 1.2k
0
votes
5
replies
2.7k
views
FPKM for Normal vs Tumor
FPKM RNA-Seq cufflinks
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 1.2k
1
vote
0
replies
6.4k
views
Visualize gene fusions in IGV
RNA-Seq next-gen
4.9 years ago by Ron ★ 1.2k
1
vote
2
replies
1.5k
views
Drugs targeting Gene Fusions
RNA-Seq next-gen
updated 5.1 years ago by 4.6k • written 5.1 years ago by ★ 1.2k
5
votes
10
replies
1.8k
views
How to recreate this dot plot?
R next-gen RNA-Seq
updated 5.1 years ago by 11k • written 5.1 years ago by ★ 1.2k
2
votes
6
replies
3.2k
views
Counting number of base pairs and features in each bed file
RNA-Seq ngs
5.2 years ago by Ron ★ 1.2k
0
votes
1
reply
1.5k
views
Database of Mutations and the associated drugs
WES ngs
updated 5.7 years ago by 87k • written 5.7 years ago by ★ 1.2k
1
vote
2
replies
2.4k
views
List of known fusions
RNA-Seq fusion ngs next-gen
updated 5.9 years ago by ▴ 420 • written 7.4 years ago by ★ 1.2k
2
votes
5
replies
5.2k
views
Visualize Gene Fusions
RNA-Seq fusion next-gen R
updated 5.9 years ago by ▴ 420 • written 7.7 years ago by ★ 1.2k
6
votes
6
replies
7.2k
views
Interpreting GSEA results
RNA-Seq GSEA next-gen
updated 6.0 years ago by ▴ 20 • written 6.4 years ago by ★ 1.2k
5
votes
6
replies
8.1k
views
Deconvolution methods on RNAseq data
RNA-Seq next-gen sequencing R bioconductor
updated 6.0 years ago by ▴ 120 • written 7.2 years ago by ★ 1.2k
0
votes
0
replies
791
views
Ratio of samples to do differential expression
RNA-Seq next-gen
6.1 years ago by Ron ★ 1.2k
0
votes
2
replies
2.7k
views
Using Cufflinks for Novel Transcripts
RNA-Seq cufflinks
updated 6.2 years ago by 11k • written 6.2 years ago by ★ 1.2k
0
votes
2
replies
2.0k
views
Mutation analysis on RNAseq
RNA-Seq mutation next-gen SNP snpEff
updated 6.4 years ago by ★ 2.5k • written 7.6 years ago by ★ 1.2k
0
votes
4
replies
3.6k
views
Pairwise comparisons in Differential Expression
RNA-Seq DESeq
6.5 years ago by Ron ★ 1.2k
1
vote
3
replies
1.3k
views
RNAseq on viral positive samples
RNA-Seq
updated 6.5 years ago by 35k • written 6.5 years ago by ★ 1.2k
9
votes
5
replies
10k
views
rRNA detection (for contamination) in RNA-seq
RNA-Seq next-gen alignment STAR
updated 6.6 years ago by ★ 2.9k • written 7.7 years ago by ★ 1.2k
0
votes
5
replies
1.9k
views
HtSeq count error
RNA-Seq htseq-count
6.6 years ago by Ron ★ 1.2k
0
votes
0
replies
1.4k
views
Using Cufflinks with Bed file
RNA-Seq next-gen sequencing
6.7 years ago by Ron ★ 1.2k
2
votes
2
replies
2.3k
views
Confirming Viruses detected from NGS data
RNA-Seq virus ngs
updated 6.8 years ago by 14k • written 6.8 years ago by ★ 1.2k
0
votes
1
reply
2.4k
views
MA plot from Differential Expression between One Sample vs another
RNA-Seq R differential-expression bioconductor
6.9 years ago by Ron ★ 1.2k
1
vote
0
replies
1.3k
views
Motifs from mutations in RNAseq
RNA-Seq mutation
7.0 years ago by Ron ★ 1.2k
1
vote
5
replies
2.2k
views
Softwares for Bacterial/Viral Classification from RNAseq
RNA-Seq next-gen sequencing
7.1 years ago by Ron ★ 1.2k
0
votes
2
replies
4.6k
views
Silhouette plots in R
RNA-Seq silhouette clustering R
updated 7.1 years ago by ▴ 630 • written 7.1 years ago by ★ 1.2k
4
votes
6
replies
4.9k
views
CAGE seq & RNA-seq
RNA-Seq next-gen CAGE-Seq
updated 7.1 years ago by 5.7k • written 7.1 years ago by ★ 1.2k
0
votes
0
replies
1.5k
views
RNAseq analysis of FFPE samples
RNA-Seq next-gen sequencing
7.2 years ago by Ron ★ 1.2k
0
votes
3
replies
2.2k
views
Installing ABYSS-P from source
RNA-Seq next-gen Abyss
updated 7.2 years ago by 8.4k • written 7.2 years ago by ★ 1.2k
16
votes
13
replies
2.4k
views
Differences between Counts and FPKMS
RNA-Seq next-gen DEseq differential-expression
updated 7.2 years ago by 6.5k • written 7.2 years ago by ★ 1.2k
0
votes
2
replies
4.2k
views
Adding Custom genomes in Kraken
RNA-Seq next-gen viruses kraken
7.3 years ago by Ron ★ 1.2k
1
vote
1
reply
2.1k
views
Convert VCF to MAF from RNASeq mutation analysis
rna-seq mutation next-gen
updated 7.4 years ago by ★ 1.2k • written 7.4 years ago by ★ 1.2k
2
votes
1
reply
1.6k
views
Mouse Reads and Human Reads Similarity
RNA-Seq bbmap next-gen
7.4 years ago by Ron ★ 1.2k
2
votes
7
replies
1.9k
views
RNA-seq quality control
RNA-Seq next-gen alignment QC STAR
updated 7.5 years ago by 104k • written 7.5 years ago by ★ 1.2k
4
votes
5
replies
7.4k
views
Remove batch effect for differential expression
RNA-Seq DEseq R next-gen
updated 2.8 years ago by • 0 • written 7.5 years ago by ★ 1.2k
0
votes
1
reply
1.7k
views
Most frequently mutated genes in VCF
RNA-Seq mutation VCF
updated 7.6 years ago by 43k • written 7.6 years ago by ★ 1.2k
0
votes
0
replies
1.5k
views
Convert mutation file to VCF
RNA-Seq mutation VCF next-gen
7.6 years ago by Ron ★ 1.2k
2
votes
0
replies
2.9k
views
Interpret GSEA results
RNA-Seq GSEA next-gen pathway
7.7 years ago by Ron ★ 1.2k
0
votes
0
replies
3.6k
views
Add annotations of X or Y labels in ggplot barplot
R ggplot heatmap
7.8 years ago by Ron ★ 1.2k
4
votes
16
replies
4.5k
views
Working with human database in Kraken
RNA-Seq next-gen genome
7.9 years ago by Ron ★ 1.2k
1
vote
3
replies
2.4k
views
Source for Normals for Bladder Cancer RNA-Seq
next-gen-sequencing RNA-Seq
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 1.2k
1
vote
0
replies
4.7k
views
Color key in Heatmap.plus package
R
updated 21 months ago by 43k • written 8.4 years ago by ★ 1.2k
0
votes
5
replies
2.7k
views
Protein Domains from fusions
RNA-Seq next-gen fusion domain
updated 21 months ago by 43k • written 8.4 years ago by ★ 1.2k
0
votes
1
reply
1.9k
views
Plotting RPKMS per chromosome
RNA-Seq R
updated 21 months ago by 43k • written 8.4 years ago by ★ 1.2k
0
votes
3
replies
2.1k
views
Assigning scoring metric to a cluster
RNA-Seq R PCA clustering
updated 21 months ago by 43k • written 8.5 years ago by ★ 1.2k
7
votes
3
replies
3.6k
views
Find unique genes in mouse genome with no homology to human genome.
gene sequence
updated 8.5 years ago by 35k • written 8.5 years ago by ★ 1.2k
68 results • Page 1 of 2
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