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131 results • Page
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Job:
Ensembl Regulation Software Developer
functional-genomics
software-developer
ensembl
updated 19 hours ago by
Ram
39k • written 3.5 years ago by
Emily
23k
1
vote
0
replies
1.0k
views
Job:
PhD position in Statistical Genetics
SNP
R
genome
updated 22 hours ago by
Ram
39k • written 3.6 years ago by
bblzuiaimessi
▴ 10
1
vote
0
replies
856
views
Job:
Ensembl Genome Annotator
ensembl
genome-annotation
updated 19 hours ago by
Ram
39k • written 3.4 years ago by
Emily
23k
1
vote
0
replies
704
views
Forum:
Call for clinical bioinformaticians who work with humans (discussion) - germline genome analysis
genetics-tests
updated 19 hours ago by
Ram
39k • written 3.4 years ago by
German.M.Demidov
★ 2.9k
1
vote
0
replies
720
views
Job:
Postdoc in Bioinformatics @ Aarhus University, Denmark
human-genetics
genomics
updated 21 hours ago by
Ram
39k • written 3.5 years ago by
sbesenbacher
▴ 10
1
vote
0
replies
1.2k
views
Job:
PhD positions in Functional Genomics at Graz University of Technology (Austria) - Deadline coming soon!
Genomics
Epigenomics
transposons
ENCODE
updated 19 hours ago by
Ram
39k • written 3.4 years ago by
funcgen
▴ 10
0
votes
3
replies
218
views
Gviz Coverage Plots
gviz
scrnaseq
cellranger
r
updated 14 hours ago by
Ram
39k • written 20 hours ago by
Researcher
• 0
0
votes
0
replies
74
views
Job:
Associate Professor, Ecology
Ecology
updated 14 hours ago by
Ram
39k • written 14 hours ago by
jterakita
▴ 20
0
votes
2
replies
2.8k
views
How to run Picard docker image
next-gen
alignment
docker
picard
updated 13 hours ago by
geocarvalho
▴ 330 • written 3.7 years ago by
elcortegano
▴ 180
0
votes
1
reply
147
views
PRSice-2 using SNPs with extremely low P-value
PRSice-2
SNP
8 hours ago by
Apprentice
▴ 140
0
votes
1
reply
71
views
What is the possibility of Depth (DP) being higher than the coverage
GATK
DP
Coverage
Depth
HaplotypeCaller
updated 7 hours ago by
seidel
11k • written 7 hours ago by
dare_devil
★ 3.1k
0
votes
1
reply
63
views
Is PanCan data microarray or rna-seq
pancan
rna
rna-seq
microarray
data
updated 6 hours ago by
ATpoint
72k • written 6 hours ago by
survive
• 0
0
votes
1
reply
98
views
CIBERSORT Error: File not found
CIBERSORT
updated 5 hours ago by
ATpoint
72k • written 15 hours ago by
jcara514
• 0
0
votes
1
reply
159
views
Information on sequin RNA spike in standards
Sequin
Spike-in
RNA-seq
updated 4 hours ago by
ATpoint
72k • written 1 day ago by
akainth
▴ 10
0
votes
2
replies
142
views
What does "OS_CNSR" and "PFS_CNSR" mean?
survival
cancer
r
3 hours ago by
JACKY
▴ 100
0
votes
0
replies
29
views
impute tool /imputing GTs _ generated imputed file has unexpected no. of cols
haplotype
impute
imputing
snps
ref
3 hours ago by
SalmaElShafie
• 0
0
votes
2
replies
1.6k
views
How to handle NaN in emmax Kinship matrix?
GWAS
SNP
updated 2 hours ago by
Thu
• 0 • written 5.1 years ago by
CWesse
• 0
0
votes
0
replies
27
views
Complex Phylogenetic Tree Annotation
annotation
tree
protein
phylogenetic
2 hours ago by
Aanushka
• 0
0
votes
0
replies
12
views
ERROR: LoadError: UndefVarError: `composition` not defined ?
Protpram
1 hour ago by
Sapphire
• 0
0
votes
1
reply
18
views
DESeq2 for different design and normalized counts
DESeq2
log2foldchange
updated 52 minutes ago by
ATpoint
72k • written 1 hour ago by
t.ru
▴ 20
0
votes
0
replies
9
views
Methylation (Illumina arrays or Whole-genome bisulfite sequencing WBS) and WGS datasets?
array
wgs
methylation
wbs
dna
51 minutes ago by
cate.cevallos
• 0
0
votes
1
reply
22
views
Alternative To interactions comparison in limma in DESeq2
DESeq2
interactions
updated 51 minutes ago by
ATpoint
72k • written 1 hour ago by
f2ff7a46
• 0
0
votes
2
replies
31
views
How to use R installed by conda instead of it installed by apt on Ubuntu
R
ubuntu
conda
40 minutes ago by
Zhichao
• 0
0
votes
1
reply
22
views
switching from illumination to NEB prep kits
NEB
WGS
WES
illumina
updated 13 minutes ago by
GenoMax
129k • written 1 hour ago by
lait
▴ 170
0
votes
2
replies
301
views
too many zeros in 16S rRNA amplicon sequencing data
16S
rRNA
23 hours ago by
zhangdengwei
▴ 190
0
votes
1
reply
18
views
Visualizing several genomes/plasmids in a single figure
visualization
updated just now by
GenoMax
129k • written 1 hour ago by
blur
▴ 270
0
votes
0
replies
662
views
Job:
Postdoctoral Fellow in High-throughput Imaging
Scikit
Omero
Imagej
IDR
updated 22 hours ago by
Ram
39k • written 3.6 years ago by
Recruit
▴ 230
0
votes
0
replies
653
views
News:
Webinar: Single Cell Multi-omics Data Analysis in Partek Flow - Visualization of CRISPR Data
CRISPR
single-cell
updated 22 hours ago by
Ram
39k • written 3.6 years ago by
kgosche
▴ 30
0
votes
0
replies
1.2k
views
Job:
Postdoc position in machine learning and variation interpretation
postdoc
machine-learning
updated 22 hours ago by
Ram
39k • written 3.6 years ago by
a1mauno
▴ 10
0
votes
0
replies
489
views
News:
2nd National Symposium on Database Development and Biocuration
Biocuration
updated 22 hours ago by
Ram
39k • written 3.5 years ago by
saurabh
• 0
0
votes
6
replies
331
views
variant allelic fraction
vep
updated 22 hours ago by
Ram
39k • written 2 days ago by
Jom
• 0
0
votes
2
replies
1.0k
views
How can I get true transcript_ids from StringTie?
StringTie
RNA-Seq
updated 22 hours ago by
Ram
39k • written 3.5 years ago by
robert.domingues
• 0
0
votes
0
replies
693
views
Job:
Bioinformatician for Ecology laboratory
assembly
genome
updated 22 hours ago by
Ram
39k • written 3.5 years ago by
l.cinti
• 0
0
votes
8
replies
1.5k
views
Chromosome Location of Sequence in Fasta File using Biopython
biopython
python
updated 22 hours ago by
Ram
39k • written 3.5 years ago by
muhammad.khizerkiet
• 0
0
votes
0
replies
968
views
Job:
Part-time postdoc in Cancer Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
biomarkers
cancer
bioinformatician
updated 21 hours ago by
Ram
39k • written 3.5 years ago by
dan.brewer
▴ 120
0
votes
1
reply
1.4k
views
News:
:: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS
RNA-Seq
Training
updated 21 hours ago by
Ram
39k • written 3.5 years ago by
David Langenberger
9.9k
0
votes
0
replies
1.0k
views
Job:
Postdoctoral researcher: Infrastructure development for nanomaterial risk assessment
nanotechnology
ontology
systems-biology
updated 21 hours ago by
Ram
39k • written 3.5 years ago by
Egon Willighagen
5.4k
0
votes
0
replies
601
views
News:
3rd edition of single cell RNAseq course in Berlin
next-gen-sequencing
R
RNA-Seq
updated 21 hours ago by
Ram
39k • written 3.5 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
657
views
News:
Training in Creating Plots, Graphs and Maps using R @ NIH
Graphs
R
Maps
Plots
updated 21 hours ago by
Ram
39k • written 3.5 years ago by
AABI
▴ 130
0
votes
0
replies
455
views
Job:
Senior Postdoctoral Research Scientist - Bioinformatics in Oxford
Oxford
postdoc
epigenetics
cancer
updated 21 hours ago by
Ram
39k • written 4 months ago by
olin0151
• 0
0
votes
0
replies
284
views
News:
Bioinformatics courses in February
Genomics
Bioinformatics-Training
updated 21 hours ago by
Ram
39k • written 4 months ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
368
views
How to compile Java files in bash?
Bash
Java
updated 21 hours ago by
Ram
39k • written 19 months ago by
ezraamustafa3
• 0
0
votes
1
reply
774
views
Retrieve the aa sequence for a given IMG gene ID
database
microbiome
updated 21 hours ago by
Ram
39k • written 3.5 years ago by
adai
▴ 10
0
votes
0
replies
1.4k
views
Job:
Research Software Engineer in Genomics -- Brown University, Providence, Rhode Island
Software-Development
Computational-biology
updated 21 hours ago by
Ram
39k • written 3.5 years ago by
ashok.ragavendran
▴ 50
0
votes
0
replies
1.1k
views
Job:
Job: Post-Doctoral Researchers/Bioinformaticians needed in Henan University
postdoc
updated 21 hours ago by
Ram
39k • written 3.5 years ago by
phoenixice154
• 0
0
votes
0
replies
626
views
News:
Training in Computational Drug Design and Discovery @NIH,USA, January 21-24, 2020
Drug-design
RNA-Seq
genomics
updated 21 hours ago by
Ram
39k • written 3.5 years ago by
AABI
▴ 130
0
votes
2
replies
770
views
Error in mvnX when running processSamples.R of OncoCNV
variant-calling
oncocnv
cnv
updated 21 hours ago by
Ram
39k • written 3.5 years ago by
mwarrier
• 0
0
votes
0
replies
1.4k
views
Job:
Bioinformatics Postdoc or Analyst position at Geisinger Research, Danville PA
postdoc
next-gen
analyst
updated 21 hours ago by
Ram
39k • written 3.5 years ago by
Rm
8.2k
0
votes
0
replies
592
views
Job:
Postdoctoral position in computational biology
genomics-data
computational-biology
updated 21 hours ago by
Ram
39k • written 3.5 years ago by
elisabetta.demontis
• 0
0
votes
0
replies
595
views
News:
BioC2020: mark your calendars!
conference
Bioc2020
updated 21 hours ago by
Ram
39k • written 3.5 years ago by
venu
7.0k
131 results • Page
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Recent Votes
ChatGPT optimized for bioinformatics questions
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Answer: Extract sequences from a fastq file by a list of IDs
Answer: Extract sequences from a fastq file by a list of IDs
A: Collapse Repeated Reads
A: Extract Reads From A Bam File That Fall Within A Given Region
Comment: Masking before RNA-Seq Alignment and Gene Prediction in Plant Genomes
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Comment: Which method is the best for using in "dba.count" in Diffbind R package
by
Rory Stark
★ 1.7k
If you are calling `dba.normalize()` directly, it must be called *after* calling `dba.count()`. `dba.count()` will apply the default normal…
Comment: switching from illumination to NEB prep kits
by
GenoMax
129k
If you are simply replacing the library prep kit then it will be compatible with normal illumina libraries. If there is a different adapter…
Comment: How to use R installed by conda instead of it installed by apt on Ubuntu
by
Zhichao
• 0
yes, I have activated this conda environment. And the conda is in `PATH` . At first, I create a new conda environment `conda create -n ne…
Comment: Limma returned only positive logFC values
by
ATpoint
72k
Raw counts, raw meaning not manipulated by any transformation. See limma and edgeR manual, it clearly covers that for using limma-trend and…
Comment: Alternative To interactions comparison in limma in DESeq2
by
ATpoint
72k
https://support.bioconductor.org/p/9143932/ -- see the lower parts where Michael Love answers, it comes down to numeric contrasts.
Comment: Limma returned only positive logFC values
by
melissachua90
▴ 40
The `mat` is log2-normalized raw data. Is it feasible? Or should I feed in counts?
Comment: DESeq2 for different design and normalized counts
by
ATpoint
72k
Nope, please read the manual of DESeq2, it clearly tells to use raw counts. What "normalized counts" do you have exactly? limma-trend might…
Comment: How to use R installed by conda instead of it installed by apt on Ubuntu
by
ATpoint
72k
Did you activate your conda environment? Is conda in `PATH`? Please describe what you did.
Comment: Limma returned only positive logFC values
by
ATpoint
72k
Bottom line is, if you are using an intercept-free model (that is what `~0+...` is doing) then you have to use contrasts. In a "normal" mod…
Comment: Asking for feedback on a Python library for computing alignments
by
Alexander
▴ 70
Thanks for sharing ! It seems there is a problem to install on Kaggle cloud (like a Colab): I tried several ways: https://www.kaggle.com/co…
Comment: Masking before RNA-Seq Alignment and Gene Prediction in Plant Genomes
by
Darked89
4.4k
I am not sure what you gain by using hard masked genome for RNA-Seq mapping. There will be reads covering some introns. But if you mask rep…
Comment: Extract sequences from a fastq file by a list of IDs
by
mhpakdel96
• 0
Thanks a lot, it works
Comment: Differential protein expression analysis
by
dsull
★ 4.2k
I don't have a tutorial but see this paper I co-authored: https://pubs.acs.org/doi/abs/10.1021/acs.jproteome.0c00666 All of the upstream …
Comment: Differential protein expression analysis
by
Ribo
▴ 40
Thank you! Is there a recommended tutorial for proteomics analysis?
Comment: Limma returned only positive logFC values
by
melissachua90
▴ 40
I clustered the samples into subtypes and am now comparing the differential expression across the subtypes.
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