updated 2.7 years ago by
Ram
45k
•
written 3.2 years ago by
lukhanyomakhabane
▴
30
2
votes
2
replies
804
views
22
votes
13
replies
6.6k
views
8 follow
0
votes
4
replies
1.3k
views
3.2 years ago by
francesca3
▴
160
1
vote
0
replies
703
views
3
votes
5
replies
1.4k
views
0
votes
0
replies
614
views
0
votes
4
replies
1.3k
views
0
votes
0
replies
661
views
3.1 years ago by
BlastedBadger
▴
160
2
votes
2
replies
759
views
2
votes
3
replies
2.1k
views
updated 3.2 years ago by
Pierre Lindenbaum
166k
•
written 3.2 years ago by
amy__
▴
250
1
vote
1
reply
897
views
updated 3.2 years ago by
cpad0112
21k
•
written 3.2 years ago by
ahmad mousavi
▴
800
0
votes
1
reply
583
views
0
votes
0
replies
528
views
3.2 years ago by
Raju
•
0
3
votes
7
replies
2.6k
views
updated 3.2 years ago by
lieven.sterck
15k
•
written 3.3 years ago by
Percy
•
0
0
votes
0
replies
664
views
updated 2.5 years ago by
Ram
45k
•
written 3.2 years ago by
misbahnaseem95
•
0
0
votes
0
replies
667
views
updated 2.5 years ago by
Ram
45k
•
written 3.2 years ago by
erwan.scaon
▴
960
0
votes
0
replies
421
views
updated 2.7 years ago by
Ram
45k
•
written 3.2 years ago by
drajangirija
▴
10
0
votes
4
replies
2.1k
views
updated 3.2 years ago by
Gama313
▴
130
•
written 4.6 years ago by
Anupriya Dalmia
•
0
2
votes
3
replies
1.2k
views
updated 3.2 years ago by
Mensur Dlakic
★
29k
•
written 3.2 years ago by
Aaron
▴
30
1
vote
1
reply
857
views
updated 3.2 years ago by
Gordon Smyth
★
8.3k
•
written 3.3 years ago by
wiscoyogi
▴
40
0
votes
0
replies
438
views
0
votes
3
replies
1.8k
views
2
votes
1
reply
1.3k
views
0
votes
0
replies
613
views
3.3 years ago by
taniamahmood38
▴
60
7
votes
4
replies
1.7k
views
updated 3.3 years ago by
ole.tange
★
4.5k
•
written 3.3 years ago by
SaltedPork
▴
170
2
votes
4
replies
1.1k
views
0
votes
0
replies
422
views
3.3 years ago by
Natan
•
0
0
votes
1
reply
487
views
2
votes
0
replies
835
views
Job:
Gig: ATAC-Seq Guide
2
votes
1
reply
1.0k
views
1
vote
1
reply
843
views
updated 3.2 years ago by
Matthias Zepper
5.1k
•
written 3.3 years ago by
Shicheng Guo
★
9.6k
0
votes
1
reply
846
views
0
votes
0
replies
548
views
0
votes
2
replies
1.1k
views
3.3 years ago by
Bioinf_Questions
•
0
0
votes
3
replies
977
views
4
votes
6
replies
1.6k
views
3.2 years ago by
tien
▴
40
3
votes
0
replies
975
views
0
votes
0
replies
447
views
3.3 years ago by
elielsonveloso
•
0
0
votes
3
replies
1.5k
views
updated 3.2 years ago by
Hamid Ghaedi
3.3k
•
written 3.3 years ago by
Dila
•
0
0
votes
1
reply
945
views
updated 3.3 years ago by
kanika.151
▴
160
•
written 3.3 years ago by
Raju
•
0
1
vote
4
replies
1.5k
views
0
votes
2
replies
724
views
0
votes
0
replies
557
views
0
votes
0
replies
824
views
3.3 years ago by
kanika.151
▴
160
2
votes
3
replies
743
views
updated 3.2 years ago by
ATpoint
89k
•
written 3.3 years ago by
15996310010
•
0
0
votes
1
reply
2.0k
views
3
votes
2
replies
2.8k
views
3
votes
6
replies
4.4k
views
updated 3.3 years ago by
Hiranshree
•
0
•
written 6.6 years ago by
daniel.naumovas
•
0
4
votes
1
reply
963
views
updated 3.3 years ago by
LauferVA
4.8k
•
written 3.3 years ago by
jabbari.parnian
▴
30
5
votes
4
replies
4.7k
views
Recent Votes
Recent Locations •
All
London, UK, just now
United States, 23 minutes ago
United States, 36 minutes ago
Russian Federation, 58 minutes ago
United States, 1 hour ago
Mexico, 1 hour ago
Shanghai, 1 hour ago
Recent Awards •
All
Popular Question to
dce1ee77
•
0
Popular Question to
Jeremy
▴
930
Popular Question to
Pratik
★
1.1k
Commentator to
ATpoint
89k
Popular Question to
firestar
★
1.7k
Popular Question to
AMARU
•
0
Supporter to
Aleksandra
▴
130
Recent Replies
Comment: Split chromosome into smaller fragments to save memory when build xg and gcsa in
by
李经纬
•
0
Thank you. Even if I build the XG index after some modifications, the building of gcsa failed even on a single chromosome. Even though I h…
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Mensur Dlakic
★
29k
For posterity, here is `nvidia-smi` output for our cluster:
```
+-------------------------------------------------------------------------…
Answer: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Mensur Dlakic
★
29k
How often do we get a chance to help @yokofakun after all the help Pierre has provided? I feel like we have to make a serious effort here.
…
Comment: DiffBind error when calling dba.count
by
Irene
•
0
I am having the same issue with the same situation, so i do not understand what could be the problem...i do not know if you finally figure …
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Pierre Lindenbaum
166k
@genomax I'm using the 'GPU' queue of my cluster (SLURM). The very same config was used with another parabrick subtool and I got not probl…
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
GenoMax
153k
Are you running this under a job scheduler? Is there a separate partition for the GPU's/are they accessible to the scheduler?
Comment: Statistical test of difference between two conditions and account for the batch
by
ATpoint
89k
Are the batches biological replicates?
Comment: how to start
by
shelkmike
★
1.7k
If you want to save time at the cost of having a lesser understanding of how bioinformatic programs work, you may study through the BioStar…
Answer: how to start
by
shelkmike
★
1.7k
I would recommend, in the following order:<br>
1) Go through Bioinformatics Algorithms, either as a video course or as a book, and do all e…
Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
by
Bastien Hervé
6.4k
For what is worth, in a previous project, I have done some tests on different hierarchical clustering methods for single cell RNAseq.
I had…
Answer: how to start
by
yura.grabovska
▴
820
* Get some data - either your own or from a paper / GEO / ArrayExpress / SRA / TCGA / cBioPortal etc etc.
* Look at the methods of papers…
Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
by
ATpoint
89k
"ward.D2" -- top of the pops in terms of interpretatble clusters from gene expression data in my hands, the rest is...often crytpic.
Comment: High percentage of intronic/intergenic reads in RNA-seq
by
i.sudbery
22k
I'd expect to see more or less what they see in your reference. Somewhere between half and two thirds of reads mapping to exons. The low fr…
Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
by
Bastien Hervé
6.4k
As the whole presentation relies on a distance matrix and elements aggregation by hierarchical clustering, it would be helpful to better un…
Traffic: 2419 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6