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121,912 results • Page
55 of 2439
Sort: Rank
Rank
Views
Votes
Replies
2
votes
1
reply
644
views
Visualize and annotate protein domains within a genomic context, given complement
complement
protein
genomics
updated 10 months ago by
cmdcolin
★ 4.3k • written 10 months ago by
Madde
▴ 20
0
votes
6
replies
1.5k
views
[ChIPSeq] Multiple Peaks at Cross Correlation Analysis
phantompeakqualtools
chipseq
crosscorrelation
encode
10 months ago by
Diren
• 0
2
votes
4
replies
914
views
Batch correction
RNA-seq
10 months ago by
Sakura
• 0
2
votes
3
replies
1.0k
views
Pre-pseudoalignment preprocessing
salmon
updated 10 months ago by
dsull
★ 7.7k • written 10 months ago by
Nicholas
• 0
0
votes
4
replies
855
views
PCA in two similar conditions
RNA-seq
PCA
updated 10 months ago by
jared.andrews07
★ 19k • written 10 months ago by
Meghan.T
▴ 10
5
votes
1
reply
727
views
[RNASeq] Excluding samples that cluster differently in PCA plot
PCA
rnaseq
updated 10 months ago by
LChart
5.1k • written 10 months ago by
Texx
▴ 40
0
votes
2
replies
1.2k
views
TCGA Methylation Beta and Gene Expression Help
ensembl
expression
hgnc
gene-names
methylation
updated 10 months ago by
yura.grabovska
▴ 820 • written 11 months ago by
zhenjie.chin88
• 0
0
votes
3
replies
565
views
Would this level of base pair mismatch suggest the data is inaccurate?
accuracy
data
base-pair
mismatch
alignment
updated 10 months ago by
GenoMax
153k • written 10 months ago by
Lou11
• 0
0
votes
7
replies
1.4k
views
BCFTOOLS: command does not work correctly. Can you help me?
bcftools
10 months ago by
jhonatan.henrique
• 0
0
votes
0
replies
739
views
Data sets for prostate/cervical cancer
cancer
datasets
databases
10 months ago by
M__
▴ 200
0
votes
4
replies
845
views
Rapid BaseQ drop in adaptor regions with UMI
adapter
fastqc
umi
adaptor
updated 10 months ago by
i.sudbery
22k • written 10 months ago by
geneticatt
▴ 140
0
votes
0
replies
599
views
Requesting help with Edge Weighted Graph Creation (Cytoscape)
Cytoscape
WGCNA
10 months ago by
Guntaas
• 0
0
votes
2
replies
1.4k
views
RANGER-DTL ERROR: missing ')' in input tree expression line x column xx
RANGER
RANGER-DTL
fasttree
updated 10 months ago by
philipgdv
• 0 • written 4.2 years ago by
seok1213neo
▴ 40
0
votes
0
replies
325
views
Amplifying more then 6 subpools in an oligopool
wet-lab
10 months ago by
gernophil
▴ 130
0
votes
5
replies
818
views
PCR Primer Design
PCR
Primer
updated 10 months ago by
Ram
45k • written 10 months ago by
ebaduareb001
• 0
0
votes
2
replies
611
views
Remove reference sequence from multifasta file
fasta
multifasta
updated 10 months ago by
lieven.sterck
15k • written 10 months ago by
FJCF
• 0
0
votes
2
replies
1.1k
views
Using Tumor Immune Dysfunction and Exclusion (TIDE)
TPM
cancer
r
10 months ago by
AlexStar
▴ 200
5
votes
8
replies
2.6k
views
Currently recommended Oxford Nanopore data basecalling and preprocessing pipeline for de novo assembly applications
ONT
assembly
Nanopore
preprocessing
basecalling
updated 3 months ago by
Asan Emirsale
▴ 10 • written 10 months ago by
Denis
▴ 320
0
votes
2
replies
639
views
GPU facility for single cell multi omics data analysis
multiomics
google-colab
gpu
single-cell
10 months ago by
KABILAN
▴ 130
0
votes
0
replies
320
views
Somatic-Sniper calls very few variants
sniper
somatic
10 months ago by
runfreely2
• 0
0
votes
2
replies
587
views
Overlap entries in annotation
Bedtools
updated 10 months ago by
Dunois
★ 2.9k • written 10 months ago by
Muhammad
• 0
3
votes
2
replies
697
views
Request for Bioinformatics Workstation Configuration for Bacterial Whole Genome Analysis?
Bacterial
Workstation
Whole
genome
AMR
updated 10 months ago by
Dunois
★ 2.9k • written 10 months ago by
mathavanbioinfo
▴ 80
0
votes
0
replies
267
views
Is there a database with the mode of inheritance for diseases?
diagnostics
genotyping
allelotyping
10 months ago by
njornet
▴ 20
0
votes
0
replies
361
views
Datasets with RNA-seq and drug sensitivity data
drug
datasets
sra
RNA-seq
sensitivity
10 months ago by
octpus616
▴ 120
0
votes
0
replies
627
views
Is it possible to convert the Hazard ratio from cox proportional hazard model into a survival function to estimate survival probability?
MachineLearning
HazardRatio
Cox
SurvivalAnalysis
SurvivalFunction
10 months ago by
Yugan Gogul Muthukumar
▴ 10
3
votes
2
replies
825
views
Is there any information about the reads duplication rate and sequencing reads length?
cfDNA
sequencing
readduplication
10 months ago by
Zeng Jingyu
▴ 80
0
votes
1
reply
539
views
HOMER annotateInteractions.pl error
annotateInteractions.pl
HOMER
updated 10 months ago by
JJJelly
• 0 • written 11 months ago by
anushkachaturvedi099
• 0
0
votes
0
replies
354
views
Strelka2 germline variants very different when pairing with different tumors?
germline
10 months ago by
Zhenyu Zhang
★ 1.3k
0
votes
3
replies
967
views
Converting ICGC ids to TCGA format
cancer
tcga
icgc
updated 10 months ago by
Zhenyu Zhang
★ 1.3k • written 11 months ago by
hadas.samuels
• 0
0
votes
7
replies
1.7k
views
merge my own RNA-seq data with TCGA UCSCXena data sets. and proper normalisation
Xena
TCGA
normalisation
RNA-seq
10 months ago by
theodore
▴ 110
0
votes
1
reply
642
views
How to get full list of TCGA patients with mutation data
R
TCGAbiolinks
TCGA
updated 10 months ago by
Zhenyu Zhang
★ 1.3k • written 10 months ago by
heochin59
• 0
1
vote
8
replies
1.4k
views
Assigning taxonomic features in CAT: incorrect species annotation?
metagenomics
taxonomy
CAT
updated 9 months ago by
mks002
▴ 220 • written 10 months ago by
DriesB
▴ 110
0
votes
0
replies
389
views
Error: No sites have activity greater than filter value.
diffbind
10 months ago by
kim
• 0
2
votes
2
replies
634
views
Merge braker.gtf and SQANT3.gff3 file
annotation
10 months ago by
anna_shin
• 0
0
votes
0
replies
373
views
Manta crash during getDepthFromAlignments
manta
sv
updated 10 months ago by
GenoMax
153k • written 10 months ago by
lucas.lochovsky
• 0
0
votes
4
replies
855
views
Cannot access Cibersort at Stanford site-- Is server down today?
Cibersort
10 months ago by
Mitchell.frederick
▴ 10
3
votes
5
replies
3.1k
views
How to interpret ANCOM-BC results when diff is true but passed_ss is false?
differential-abundance
updated 10 months ago by
andres.firrincieli
3.9k • written 10 months ago by
benkosta
• 0
0
votes
2
replies
537
views
Generating SVG figure by pasting XML text directly
Programming
SVG
Publication
Figure
10 months ago by
Stephan
• 0
3
votes
1
reply
592
views
R studio
RStudio
updated 10 months ago by
GenoMax
153k • written 10 months ago by
Mohammad
• 0
0
votes
6
replies
1.0k
views
sample-specific celltype in integrated data . Biology or batch effect ?
single-cell
seurat
scRNAseq
batch-effect
10 months ago by
AB
▴ 390
8
votes
10
replies
1.5k
views
Inconsistent Methylation Levels Between Pairs in WGBS Data After Moving to NovaSeq X
X
WGBS
NovaSeq
updated 10 months ago by
GenoMax
153k • written 10 months ago by
Michal
▴ 20
2
votes
0
replies
21k
views
Herald:
The Biostar Herald for Monday, November 11, 2024
herald
10 months ago by
Biostar
3.6k
3
votes
1
reply
632
views
color specific genes in VariableFeaturePlot
ggplot2
VariableFeaturePlot
Seurat
updated 10 months ago by
Bastien Hervé
6.5k • written 10 months ago by
Assa Yeroslaviz
★ 1.9k
0
votes
0
replies
328
views
Mapping gene symbols to MONDO codes
mondo
genes
mapping
10 months ago by
CRivi
• 0
0
votes
0
replies
791
views
Blog:
Tools and Future of eQTL: Data Gathering and Application in Genetic Medicine
eQTL
SNPs
GWAS
10 months ago by
Novogene
▴ 510
2
votes
1
reply
795
views
Strategy to find transgene copy number and integration sites using only Nanopore simplex reads?
sequencing
transgenes
ngs
updated 10 months ago by
colindaven
7.9k • written 10 months ago by
Mark
▴ 60
2
votes
4
replies
921
views
Where can I download a BED file with exonic regions?
exome
bed
updated 10 months ago by
Pierre Lindenbaum
166k • written 10 months ago by
njornet
▴ 20
0
votes
2
replies
700
views
cellranger error - insufficient disc space allocated to cellranger
cellranger
updated 10 months ago by
yura.grabovska
▴ 820 • written 10 months ago by
tony_88888
• 0
0
votes
1
reply
651
views
Pigeon make-seurat produces empty output
isoseq
pigeon
pacbio
updated 10 months ago by
yura.grabovska
▴ 820 • written 10 months ago by
TheCatalyst
• 0
0
votes
0
replies
297
views
Germline CNV CALLING
gErmline
CNV
updated 10 months ago by
GenoMax
153k • written 10 months ago by
Smilesky
• 0
121,912 results • Page
55 of 2439
Recent Votes
A: How to extract reads with no INDEL?
Answer: Different UMAP for batch correction in R and Pytho
Answer: WGCNA package in R: dendogram plot error
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq
Answer: Tried building a compact sequence format with 4-bit storage
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq
Comment: RNA-SEQ where only a subset of genes is of interest
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Recent Replies
Comment: Developing a genomics ML model using bytes?
by
dariober
15k
> what if we can use the bytes to develop a model? My understanding is that the OP is considering building a model using the sequences in …
Comment: WGCNA package in R: dendogram plot error
by
RJ
• 0
You might had delete the outliers from the expression table but then the traits data.frame doesn't match with expression table dimensions.
Comment: miRNA low mapping ratings
by
Ant
▴ 50
No, it's a personal dataset. I haven’t seen the link, but if I understand correctly, it's not possible to use the software for free, right?
Comment: miRNA low mapping ratings
by
GenoMax
153k
So this is a public dataset? QIAseq miRNA libraries may require special handling. Have you seen --> https://resources.qiagenbioinformatics.…
Comment: Trouble when installing arb
by
GenoMax
153k
Are you referring to software found here --> http://download.arb-home.de/release/latest/ ? If so why are you installing the source. Authors…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
153k
All valid points. This is a SRA dataset. If it is covered by a publication hopefully it is not a bad one. @Pranav if you can post the SRA a…
Answer: Different UMAP for batch correction in R and Pytho
by
antonioggsousa
3.4k
Hi, I'm mostly an R user, but the codes you presented look correct to me. The two UMAP projections *"look too similar to be different"*, …
Answer: How to properly assemble phage genomes?
by
Joe
22k
This might help: https://millardlab.org/lab-members/alumni/lucy-gannon/lucys-beginner-guide-to-bacteriophage-genome-assembly/
Comment: RNA-SEQ where only a subset of genes is of interest
by
piffelpaff
• 0
Thanks for your reply. Yes it's single-cell and we're talking about roughly 30 pre-selected genes. I see. I was rather referring to the d…
Answer: Best set of tools / workflows for predicting the biosynthesis pathways of comple
by
Joe
22k
This may not be exactly what you're looking for (kind of the other way around, predicting synthetic clusters from genes rather than the pro…
Comment: Developing a genomics ML model using bytes?
by
ATpoint
89k
How is this different from https://www.biostars.org/p/9615062/
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq
by
npb27
▴ 20
Hi thanks for your answer Interesting idea about ribosome length, although I can't think why this should affect the apparent 3' position b…
Comment: RNA-SEQ where only a subset of genes is of interest
by
ATpoint
89k
Is this single-cell? How many genes are we talking about? > The alternative would be to just use the raw data without normalization, run W…
Comment: Developing a genomics ML model using bytes?
by
ATpoint
89k
So essentially you work on a compression algorithm, is it? If so, be sure to bechmark your idea against the hundreds of existing and fast c…
Comment: How to get a legend from genoplotR?
by
antonioggsousa
3.4k
Hi, I'm not familiar with this package or function, but from the function documentation that you had provided in the link, it says about …
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