Limit : all time
all time today this week this month this year
121,395 results • Page 574 of 2428
Sort: Rank
Rank Views Votes Replies
3
votes
4
replies
1.4k
views
GATK snap calling - combine exome and WGS?
GATK
updated 3.8 years ago by ★ 1.2k • written 3.8 years ago by • 0
1
vote
9
replies
1.9k
views
fasta index file too big for genome browsers
index fasta fai jbrowse2
updated 3.8 years ago by ▴ 590 • written 3.8 years ago by ▴ 10
1
vote
5
replies
2.1k
views
Cutadapt doesn't seem to recognize adapter specific parameters
Cutadapt
3.8 years ago by kyusikkim ▴ 20
3
votes
3
replies
3.6k
views
How to rename fastqs for cell ranger ?
cell genomics count ranger fastq 10x
updated 3.2 years ago by ▴ 30 • written 3.8 years ago by ▴ 10
0
votes
0
replies
550
views
How to deal with differences in sample size for metagenomic diversity based on abundance?
metagenomics sample-size
updated 2.2 years ago by 45k • written 3.8 years ago by ▴ 60
1
vote
6
replies
2.6k
views
Cluster Profiler- enrichGO
clusterProfiler
updated 3.1 years ago by • 0 • written 3.8 years ago by ▴ 20
1
vote
3
replies
3.9k
views
Survival analysis with survminer package in R: change number of decimal places in p-value
survminer survival pval R
3.8 years ago by isd1989 • 0
2
votes
7
replies
1.4k
views
Can I easily download the LOC... numbers of the genes of my peptide sequences?
Gene LOC Peptid
updated 3.8 years ago by 152k • written 3.8 years ago by • 0
0
votes
1
reply
865
views
GSTAr.pl probelm running
CleaveLand4 analysis degradome plant sequencing
3.8 years ago by Rey • 0
0
votes
2
replies
958
views
Help me do a gene enrichment analysis
DEseq2 GSEA Heatmap
3.8 years ago by anasjamshed ▴ 140
3
votes
7
replies
2.8k
views
Snakemake bwa mem
Snakemake bwa
updated 2.5 years ago by 45k • written 3.8 years ago by ▴ 70
0
votes
2
replies
1.4k
views
Get matrix, barcodes and features from H5 file
H5 matrix
3.8 years ago by jonathanpa12 ▴ 10
0
votes
2
replies
4.0k
views
GCTA GREML for WGS with extremely large number of samples and SNPs
GCTA GREML genome
updated 2.8 years ago by • 0 • written 6.4 years ago by ▴ 130
0
votes
0
replies
533
views
for choosing the reference for SNPeff
SNPeff snp reference
updated 3.8 years ago by 152k • written 3.8 years ago by ▴ 60
2
votes
4
replies
2.3k
views
Coverage plot/histogram of a complete genome
bam histogram plot genome Coverage
updated 3.8 years ago by 9.0k • written 3.8 years ago by ▴ 140
0
votes
14
replies
3.8k
views
hisat2 alignment showing 0% aligned but sam file is 6GB in size.
hisat2 alignment
updated 3.8 years ago by 102k • written 3.8 years ago by ▴ 10
0
votes
0
replies
456
views
Comparing Two Different Groups
genomics
3.8 years ago by joe_genome ▴ 50
3
votes
3
replies
1.6k
views
"gt gff3 -sortlines -tidy -retainids" reduce some lines
gff3 genome
3.8 years ago by 153348734 • 0
0
votes
0
replies
715
views
DESeq2 analysis example, opinions?
DESeq2 contrasts matrix_design
3.8 years ago by flalom • 0
0
votes
3
replies
1.3k
views
HTseq header
count Htseq matrix
updated 3.8 years ago by 21k • written 3.8 years ago by ▴ 50
2
votes
2
replies
2.3k
views
How can i export a network from String db page to Cytoscape?
String db Network Cytoscape
updated 3.8 years ago by ▴ 90 • written 3.8 years ago by • 0
3
votes
4
replies
3.6k
views
How to logo-plot sequences of uneven length ?
logo length sequence sequencing
updated 3.8 years ago by ★ 1.6k • written 3.8 years ago by • 0
0
votes
0
replies
615
views
Long vertical colnames in gheatmap are cropped
ggtree gheatmap
3.8 years ago by carmenespinosagongora • 0
1
vote
6
replies
2.9k
views
Finding active or binding site in protein sequence
Protein structure
3.8 years ago by kishorssf91 ▴ 20
2
votes
2
replies
5.0k
views
ggarrange result - all graphs are identical
ggarrange ggplot2 R
updated 2.3 years ago by 45k • written 3.8 years ago by ▴ 80
0
votes
0
replies
662
views
Forum: Loss of Gene Information: Discrepancies between RNA Sequencing, cDNA Microarray, and qRT-PCR
RNA-Seq microarray qRT-PCR
3.8 years ago by Antonio R. Franco ★ 5.2k
0
votes
0
replies
591
views
Protein-protein interaction modeling prediction tools
PPI prediction protein
3.8 years ago by jsw940 ▴ 10
0
votes
3
replies
2.0k
views
Genotyping low read depth sequences using GATK
GATK
updated 3.8 years ago by ★ 1.2k • written 3.8 years ago by ▴ 60
3
votes
4
replies
4.2k
views
Reading methylation without IDAT files downloaded from GEO
Methylation Gene expression omnibus GEO minfi
updated 3.8 years ago by ▴ 10 • written 6.7 years ago by ▴ 300
0
votes
0
replies
557
views
Bathymetric mapping to visualize temperature, chlorophyll-a, and salinity?
Bathymetric mapping GRASS GIS
3.8 years ago by MSRS ▴ 590
1
vote
3
replies
1.2k
views
How to process batches to be able to correct for its effect
batch-correction sample-randomization
updated 3.8 years ago by 13k • written 3.8 years ago by ▴ 110
0
votes
3
replies
962
views
Convert decimal numbers of each snp into genotype in r
snp genotype
updated 23 months ago by 45k • written 3.8 years ago by • 0
0
votes
0
replies
536
views
progressiveMauve alignment issues
alignment galaxy genome progressivemauve
3.8 years ago by jmgreenb420 ▴ 10
16
votes
23
replies
14k
views
13 follow
Where can I get ?or how can I make a mappability track for hg38 assembly
sequencing alignment Assembly sequence
3.8 years ago by manojkumar_bhosale ▴ 80
4
votes
2
replies
2.5k
views
Interpreting likelihood ratio tests using DESeq2
RNA-sequencing expression differential DESeq2 R gene
updated 3.2 years ago by ★ 1.3k • written 3.8 years ago by ▴ 20
2
votes
3
replies
2.1k
views
genome browser to check SNP genome build
build snp vcf genome
updated 3.8 years ago by ★ 4.2k • written 3.8 years ago by ▴ 140
1
vote
3
replies
2.4k
views
Unusual sequence quality plots - DADA2 pipeline
sequencing dada2 software error R
updated 3.8 years ago by • 0 • written 5.2 years ago by • 0
0
votes
0
replies
1.2k
views
how to calculate Polymorphic Informative Content (PIC) from a VCF file
PIC VCF R SNP
updated 3.8 years ago by 35k • written 3.8 years ago by • 0
0
votes
0
replies
437
views
Compare both reads of sample
fastqc_report.txt fastqc
updated 3.8 years ago by 13k • written 3.8 years ago by • 0
1
vote
0
replies
4.3k
views
Subclustering work-flow suggestions in Seurat
seurat cluster single-cell
3.8 years ago by learner-MD ▴ 30
0
votes
7
replies
3.3k
views
How to perform gene annotation in kallisto?
Gene kallisto annotation
updated 22 months ago by • 0 • written 3.8 years ago by ▴ 120
0
votes
0
replies
660
views
disease symptoms thesaurus
disease thesaurus symptoms
3.8 years ago by Myosotis1979 ▴ 30
0
votes
0
replies
548
views
How to get TAIR IDs from genome coordinates in BED format?
BED ChIPseq Arabidopsis MACS2 RNAseq
3.8 years ago by g.james2 • 0
1
vote
1
reply
1.7k
views
Adding read groups to mark duplicated bam file
Picard GATK
updated 3.8 years ago by ★ 1.2k • written 3.8 years ago by ▴ 300
0
votes
0
replies
824
views
Can I calculate the correlation of hazard ratios of different features for comparative purposes?
prognosis hazard ratio regression concordance cox correlation
3.8 years ago by joker33 ▴ 150
2
votes
2
replies
941
views
How to get a FASTA format file with the DNA sequences of all annotated genes?
fasta sequence-analysis database dataset ncbi
updated 3.8 years ago by ★ 29k • written 3.8 years ago by ▴ 30
0
votes
1
reply
954
views
Duplicates in ICGC expression data
RNA-Seq ICGC
updated 3.8 years ago by • 0 • written 4.8 years ago by ▴ 50
7
votes
3
replies
2.3k
views
When running pca with GCTA, why are there the same number of eigenvalues as the number of samples
GCTA snp PCA
3.8 years ago by ? ▴ 60
2
votes
4
replies
6.3k
views
blast culling_limit option behavior
blastn alignment culling_limit
updated 3.7 years ago by ▴ 20 • written 8.6 years ago by ▴ 960
0
votes
4
replies
2.8k
views
Spades.log file explanation
Spades
3.8 years ago by K.Gee ▴ 40
121,395 results • Page 574 of 2428
Recent Votes
Comment: convert raw counts to TPM
feature selection using random forest
Where To Download Mouse Mm10 Dbsnp Database With Vcf Format
Binning the rare biosphere
Binning the rare biosphere
plink2 reorder alleles by fasta reference
Answer: plink2 reorder alleles by fasta reference
Recent Locations • All
Germany, just now
Ghent & Brussels, Belgium, 1 minute ago
Poland, 6 minutes ago
Sweden, 7 minutes ago
Spain, 8 minutes ago
Ireland, 9 minutes ago
Spain, 9 minutes ago
Recent Awards • All
Popular Question to dthorbur ★ 3.0k
Scholar to Raony Guimarães ★ 1.5k
Teacher to Juke34 9.2k
Popular Question to Biomed-jeh ▴ 70
Popular Question to Morgan S. ▴ 90
Popular Question to htchd • 0
Popular Question to ParastooA ▴ 20
Recent Replies
Answer: Should I perform integration to correct batch effects? by antonioggsousa 3.2k
Hi, Please check my previous answer to a similar post/question on this forum: [When should I NOT apply batch correction for my single-cel…
Answer: Batch correction in TNBC epithelial cells by ATpoint 88k
> (1) Is my pipeline correct? Especially re-applying the harmony to the sub-setted the TNBC epithelial cells. You **can** do that. No prob…
Comment: Different comparisons in RNASeq Analysis by mbyvcm ▴ 460
My suggestion is that you consider performing what is commonly referred to as a "delta-delta" contrast. You should be able to find plenty o…
Comment: mgl tool index error by Mahesh • 0
no i am simply drag and drop my pdbqt file in GUI
Answer: Best way to install R packages on an HPC? by Charles Plessy ★ 2.9k
At my workplace I created a Singularity image that has most of the C/C++ libraries installed, and R's library path pointing to an image-spe…
Comment: Best way to install R packages on an HPC? by cfos4698 ★ 1.1k
FWIW, I've recently still been running into environment solving issues with conda (even with the incorporated libmamba changes) that mamba …
Comment: How to interpret genomescope to help remove duplicates by mohamadelian1996 • 0
Thank you for helping me out. Other related species have genomes ranging between 400 and 700 Mb so the length given here by genomescope see…
Comment: How to interpret genomescope to help remove duplicates by GenoMax 152k
What is the expected genome size and ploidy for this organism? Can you post the busco results?
Comment: Is it valid to stack brightfield and fluorescence channels in a CNN input? by LChart 5.0k
Not a real answer, but it should be pointed out that the only way to learn contrastive filters across modalities (i.e., fluorescence-only e…
Answer: Is it valid to stack brightfield and fluorescence channels in a CNN input? by Mensur Dlakic ★ 29k
I think this is a borderline bioinformatics question, but I'll still attempt to answer. You won't break the computer by merging all three …
Comment: mgl tool index error by GenoMax 152k
Are you using command line or some sort of GUI? Post the full command if you are doing this on the command line.
Comment: Snakemake Module Error: string indices must be integers by Jesse ▴ 870
But wait, is the idea with modules that you supply a preloaded config for that module, or that you supply a *path* to a separate config, li…
Comment: convert raw counts to TPM by dthorbur ★ 3.0k
Good catch. Edited my comment.
Comment: Single-cell RNA Sequencing - transcript abundance estimation using Alevin-Fry by wooh • 0
Thank you! Yes its a public dataset so no control over that unfortunately, that hasnt used the specific 5'-kit so wanted to see how these p…
Comment: convert raw counts to TPM by dariober 15k
Note that, if I'm not mistaken, the name `geneLength` is misleading since you probably want to the *transcript* length. Possibly use the le…
Traffic: 4170 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6