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122,200 results • Page
654 of 2444
Sort: Rank
Rank
Views
Votes
Replies
4
votes
2
replies
1.1k
views
Select only protein coding Ensembl ID
R
genes
RNAseq
EdgeR
4.5 years ago by
sumitguptabt
▴ 30
0
votes
0
replies
665
views
How to simulate phenotype from two random multivariant normal distributed variable and calculate statistical power!
mvnorm
simulation
phenotype
4.5 years ago by
gaaraqrq
• 0
0
votes
0
replies
662
views
bedtools genomecov fractions not summing to 1
genomecov
bedtools
4.5 years ago by
maxrwjones
▴ 60
0
votes
0
replies
1.1k
views
Tool:
IPC 2.0: prediction of isoelectric point and pKa dissociation constants
deep-learning
isoelectric-point
2D-PAGE
pKa
updated 2.4 years ago by
Ram
45k • written 4.5 years ago by
Lukasz Kozlowski
• 0
2
votes
2
replies
1.1k
views
Why clusters look different in single nuclear RNA Seq.
snRNA
clustering
seurat
updated 4.5 years ago by
Kevin Blighe
★ 90k • written 4.5 years ago by
snaik
▴ 10
0
votes
1
reply
1.1k
views
Power calculation for RIP-seq
RIP-seq
CHIP-seq
updated 4.5 years ago by
ATpoint
90k • written 4.5 years ago by
mimA
▴ 30
2
votes
2
replies
1.4k
views
TCGA samples
TCGA
Samplestype
4.5 years ago by
mrashad
▴ 80
1
vote
2
replies
1.3k
views
How can a mapping be performed without alignment?
mapping
alignment
genome
map
updated 4.5 years ago by
prasundutta87
▴ 730 • written 4.5 years ago by
ssko
▴ 20
13
votes
9
replies
4.5k
views
How to Write Loop For Trimming Every FastQ File Individually
Trimming
Nanopore
Fastq
Rna-Seq
updated 4.5 years ago by
Carlo Yague
9.0k • written 4.5 years ago by
santos48
▴ 40
2
votes
3
replies
5.7k
views
Using Biopython to access MUSCLE
biopython
alignment
updated 4.5 years ago by
tzwang
▴ 10 • written 8.8 years ago by
jtbioinfo
▴ 10
0
votes
1
reply
1.8k
views
How to plot scaling curves for Hi-C data?
Hi-C
updated 4.5 years ago by
Алёна Константиновна
• 0 • written 5.1 years ago by
Linus
• 0
2
votes
6
replies
2.1k
views
ATAC-seq protocol stop-point check
ATAC-seq
4.5 years ago by
Lord.Mor
• 0
0
votes
1
reply
1.0k
views
Trying to use python regular expressions to filter fasta file sequence headers
filter
fasta
QC
python
read
updated 4.5 years ago by
cpad0112
21k • written 4.5 years ago by
Ash
• 0
2
votes
2
replies
1.7k
views
Stop BWA mem trimming
fasta2sam
BWA
BWA-mem
alignment
updated 4.4 years ago by
Ram
45k • written 4.5 years ago by
shahramsaghaei85
• 0
0
votes
2
replies
1.2k
views
Error in vsd_adjusted_log2[rownames(subset(res, !is.na(padj) & padj < : subscript out of bounds
Rstudio
DeSeq2
heatmap
4.5 years ago by
mrinsmrids
• 0
5
votes
3
replies
2.4k
views
PSSM from alignment
Alignment
PSSM
4.5 years ago by
Vladimir Leshuk
▴ 50
0
votes
0
replies
554
views
QTL for half-sib families
families
QTL
Half-sib
SNPs
4.5 years ago by
irenecobo88
• 0
0
votes
2
replies
1.5k
views
tximport for gene level summarization of 9 quant.sf files
salmon
tximport
rna-seq
updated 4.5 years ago by
Ram
45k • written 4.5 years ago by
Cody
• 0
4
votes
6
replies
2.8k
views
Empty output file after trim primers with Cutadapt
cutadapt
updated 4.5 years ago by
Ram
45k • written 4.5 years ago by
ALEJANDRO
• 0
16
votes
13
replies
22k
views
9 follow
How to work out Z score for heatmaps for RNA seq dataset
R
updated 18 months ago by
robert.flynn.21
▴ 10 • written 4.5 years ago by
v.johnson
▴ 30
0
votes
0
replies
803
views
Plant sRNA seq analysis pipelines
sRNA
pipelines
updated 4.5 years ago by
Ram
45k • written 4.5 years ago by
weixuchu63
▴ 10
2
votes
3
replies
1.2k
views
Read mapping statistics
phg
updated 4.5 years ago by
Ram
45k • written 4.5 years ago by
kathrynm
• 0
3
votes
2
replies
2.1k
views
Nucleotide BLAST
BLAST
updated 4.5 years ago by
lieven.sterck
16k • written 4.5 years ago by
timothy.kirkwood
▴ 140
4
votes
7
replies
1.8k
views
Small RNA Seq Analysis for newcomers...
RNA-Seq
updated 4.5 years ago by
weixuchu63
▴ 10 • written 5.8 years ago by
tushar131189
▴ 20
0
votes
0
replies
1.1k
views
How can I use PopGenome set.synnonsyn() function on whole genome vcf data?
vcf
R
set.synnonsyn
synonymous-sites
PopGenome
4.5 years ago by
apc
• 0
6
votes
6
replies
2.4k
views
Trimming an alignment around a given sequence
pairwise
script
crop
alignment
4.5 years ago by
QLFblaireau
▴ 30
0
votes
1
reply
963
views
Trimgalore for just R2
reads
trimming
trimgalore
WGBS
updated 4.5 years ago by
GenoMax
154k • written 4.5 years ago by
Georgia
• 0
0
votes
1
reply
1.4k
views
dada2: plotQualityProfile - Error: IncompleteFinalRecord
r
amplicon
dada2
4.4 years ago by
ben.tatton
• 0
0
votes
1
reply
708
views
Network analysis issues
networkanalysis
updated 4.5 years ago by
seidel
11k • written 4.5 years ago by
claire.garfield
• 0
0
votes
11
replies
4.5k
views
Regression assumptions - fitted and residual plots
assumptions
regression
updated 4.5 years ago by
Student
▴ 30 • written 4.5 years ago by
Elizabeth
• 0
0
votes
0
replies
1.0k
views
Fisher's exact test for comparing TCR clonotype counts
R
TCR-seq
4.5 years ago by
pm2012
▴ 140
0
votes
0
replies
764
views
Too few mutations to analyze MutSigCV
MutSigCV
mutations
4.5 years ago by
asmariyaz23
▴ 10
1
vote
2
replies
1.5k
views
Download raw RNA-seq data from TCGA
TCGA
RNA-seq
4.5 years ago by
qwzhang0601
▴ 80
0
votes
2
replies
1.1k
views
HOMER peak-motif relationship as direct-indirect binding
homermotif
directbinding
indirectbinding
4.5 years ago by
buffealo
▴ 130
2
votes
2
replies
1.3k
views
Looking for COVID-19 patient sample FastQ/VCF files
WGS
COVID-19
VCF
WES
Sequencing
updated 4.5 years ago by
ATpoint
90k • written 4.5 years ago by
screadore
▴ 20
6
votes
7
replies
9.5k
views
6 follow
Abyss Output File Formats
assembly
abyss
updated 2.0 years ago by
Ram
45k • written 15.6 years ago by
Rob Syme
▴ 540
0
votes
0
replies
1.0k
views
News:
Cellosaurus release 38 is available
knowledgebase
cell-line
updated 2.8 years ago by
Ram
45k • written 4.5 years ago by
Amos Bairoch
▴ 140
2
votes
5
replies
2.1k
views
SHAPEIT v4 modify keep QUAL FORMAT and INFO field
shapeit
phasing
haplotype
4.5 years ago by
nhaus
▴ 420
1
vote
1
reply
1.2k
views
MITOS2 and OH
annotation
mitochondrial
genome
4.5 years ago by
James
▴ 10
2
votes
3
replies
1.5k
views
microarray , R package oligo and summarised level
R
nicroarry
oligo
4.5 years ago by
chimerajit
• 0
2
votes
3
replies
2.6k
views
Using log2(TPM/10+1) values in Seurat
10X
Seurat
R
updated 4.5 years ago by
fracarb8
★ 1.8k • written 4.5 years ago by
zizigolu
★ 4.4k
0
votes
0
replies
817
views
topTable doesn't have LogFc and B column
microarray
DGE
r
topTable
4.5 years ago by
xxxxxxxx
▴ 20
11
votes
11
replies
4.0k
views
How to interpret a FASTA file
Sequencing
DNA
updated 4.5 years ago by
lieven.sterck
16k • written 4.5 years ago by
Student
▴ 30
2
votes
3
replies
1.1k
views
How to create a percentage stack plot for unequal group size in R?
Rstudio
Biostatistics
Percentage
Stackplot
updated 4.5 years ago by
cpad0112
21k • written 4.5 years ago by
jansha.1997
• 0
4
votes
7
replies
2.3k
views
Multi-factor Analysis in DeSEQ2
rnaseq
r
DESeq2
4.5 years ago by
pthom010
▴ 40
1
vote
7
replies
5.5k
views
WGCNA and SC-RNA Seq data
sc-RNA seq
RNA-Seq
wgcna
updated 4.5 years ago by
liangqinsi
▴ 50 • written 5.5 years ago by
pennakiza
▴ 60
0
votes
2
replies
2.6k
views
Forum:
Bioinformatics internship in Europe
europe
internship
updated 4.5 years ago by
lorenzo.fabbri92sm
• 0 • written 4.5 years ago by
melissachua90
▴ 70
0
votes
1
reply
989
views
Are [*.removed.sorted.bai] and [*.metrix.txt] needed for the next step?
removed.sorted.bai
metrix.txt
removed.sorted.bam
updated 4.5 years ago by
Devon Ryan
105k • written 4.5 years ago by
Hyeong Seok
• 0
0
votes
0
replies
663
views
Geno Ontology loader in Tripal
Tripal
database
GO
4.5 years ago by
felipead66
▴ 120
0
votes
0
replies
1.1k
views
SYS_ERROR when generating CGVIEW image in BRIG
genbank
comparative
error
BRIG
genomics
4.5 years ago by
kira kira
• 0
122,200 results • Page
654 of 2444
Recent Votes
Answer: Flatten a GTF
Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
Can EdgeR of DeSeq be used for Single-cell RNA-seq?
Answer: Getting the overlap between two GTF files
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
Converting GFF to GTF
Answer: best practice for diploid variant calling
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Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
thomas.heigl.ibk
▴ 10
thanks for the quick reply. i posted the screenshot. gatk-internally, there is still the difference using -ERC or not, priot is getting …
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
thomas.heigl.ibk
▴ 10
here the igv view. showing the histogram for all samples plus the reads for one: ![enter image description here][1] and expanded view of …
Comment: low quality data or file name swapping -- cellranger arc errors when processing
by
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3.5k
Check the read lengths to make sure the files are correct.
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
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166k
> Any suggestions or help you could share please, show us an IGV screenshot of the position GATK realign the reads locally, discards read…
Comment: Can i use orthofinder for small protein datasets and not full proteome?
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• 0
By sequence. Thank you for your response!
Comment: Why did the QV value decrease significantly after using YAHS for HiC scaffolding
by
xinguok794
▴ 10
Thank you for your reply! Unfortunately, despite running YAHS with `--no-contig-ec`, the QV value of the resulting FASTA file did not impro…
Comment: Subsetting before QC in Spatial Transcriptomics
by
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▴ 30
Hi Kevin, Thanks for the detailed explanation. Due to the characteristics of the datasets, we initially used very lenient quality control…
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▴ 10
Thank you very much Kevin, it worked!
Comment: ID unifiying across different datasets
by
GenoMax
154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets
by
DrSmad
▴ 10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
Comment: ID unifiying across different datasets
by
zizigolu
★ 4.4k
sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
Comment: snpEff: Unsupported structural variant types
by
shpak.max
▴ 70
Unfortunately, while it ran without a problem initially, when I checked the run screen today, I saw the following error message (and unlike…
Comment: ID unifiying across different datasets
by
GenoMax
154k
You can use the [**ID mapping tool**][1] from UniProt site (third ID did not map from the list above): From To P68104 ENSG0000015…
Answer: The geo samples is not having sentrix id and sentrix position. But this informat
by
yura.grabovska
▴ 890
Crosspost from related question: https://www.biostars.org/p/9616466/#9616534 ``` ##Using R, illuminaio from Bioconductor library(…
Answer: Finding Sentrix ID in HM450K arrays
by
yura.grabovska
▴ 890
``` ##Using R, illuminaio from Bioconductor library(illuminaio) temp.idat <- readIDAT(file = "200379120087_R02C02_Grn.idat") tem…
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