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121,993 results • Page 654 of 2440
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0
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5
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1.5k
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graph boxplot error
R codon boxplot ggplot2
updated 4.4 years ago by 21k • written 4.4 years ago by • 0
0
votes
0
replies
959
views
How to decide between standardized mean difference (SMD) and log2fold change (log2FC) before doing meta-analysis?
standardisedmeandifference smd metaanalysis
4.4 years ago by deep771992chanda ▴ 40
1
vote
1
reply
912
views
How can I extract sequences from FASTA file using OTUs ID?
FASTA
4.4 years ago by twinklemishra0892 ▴ 10
6
votes
11
replies
4.3k
views
TCGA CNV data 1p/19q codeletion (whole arm deletion)
TCGA CNV codeletion GBM LGG
updated 2.4 years ago by • 0 • written 5.3 years ago by ▴ 20
2
votes
2
replies
1.2k
views
UCSC "chromEnd larger than chrom chr21 size (46750259 > 46709983)" error
bed customtracks peakcall UCSC
updated 4.4 years ago by 154k • written 4.4 years ago by ▴ 130
0
votes
0
replies
483
views
value in parenthesis in time tree phylogenetic tree
timetree phylogenetictree
4.4 years ago by Jung_JT • 0
0
votes
0
replies
726
views
Lambda values and lamda tree in CAFE analysis
lamba lambda_tree CAFE
4.4 years ago by Jung_JT • 0
1
vote
1
reply
989
views
Whole genome fasta file for Macaca fascicularis
fasta Macaca fascicularis
updated 4.4 years ago by 154k • written 4.4 years ago by • 0
0
votes
0
replies
698
views
"significantly different" heritability
statistics heritability
4.4 years ago by gokberk ▴ 90
0
votes
0
replies
751
views
Interpretation about comparison of mapped KEGG
comparison CDS gene kegg
4.4 years ago by Jonathan Yoou ▴ 70
1
vote
4
replies
2.9k
views
Gini coefficient TCR repertoire
TCR-sequencing Gini
2.7 years ago by Lucy ▴ 170
3
votes
5
replies
4.8k
views
Varying length sequences in hhblits (hhsuite 3.3) generated MSA
hhsuite MSA hhblits
4.4 years ago by sajid ▴ 20
0
votes
7
replies
3.0k
views
Why were all TCGA SVS slides redacted?
slides slide tcga svs digital offtopic
updated 4.4 years ago by 89k • written 4.5 years ago by ▴ 50
2
votes
3
replies
1.9k
views
RNA seq of xenografts
PDX RNA
4.4 years ago by salehm ▴ 10
0
votes
3
replies
4.2k
views
How to estimate the percent phenotypic variation explained by the significant SNP from a GWAS study?
GWAS variance statistics SNP R-studio
4.4 years ago by anikcropscience ▴ 270
3
votes
1
reply
2.1k
views
How to filter SNP and INDEL separately for VCF files
VCF filter
updated 4.4 years ago by 166k • written 4.4 years ago by ▴ 10
2
votes
5
replies
1.7k
views
collapsing coordinate information from a blast result
blast
updated 4.4 years ago by ★ 30k • written 4.4 years ago by ▴ 50
0
votes
2
replies
1.2k
views
isoseq ccs error "Caught IO problem handling ZMW file"
isoseq3 ccs error
4.4 years ago by wzw0029 • 0
1
vote
2
replies
1.2k
views
adjusted p-values in meta-analysis
meta-analysis adj pvalue
4.4 years ago by kindisha_blue4 • 0
0
votes
0
replies
706
views
Job: at Mogrify: Senior Bioinformatician
NGS R Python HumanDisease SingleCellSequencing
4.4 years ago by Mogrify Talent Acquisition ▴ 10
0
votes
0
replies
711
views
Job: at Mogrify: Bioinformatician
NGS AlgorithmDev R Python SingleCellSequencing
4.4 years ago by Mogrify Talent Acquisition ▴ 10
2
votes
2
replies
1.8k
views
Bedtools intersect 0- and 1-based coordinate files
gff intersect bedtools bam
4.4 years ago by maxrwjones ▴ 60
0
votes
1
reply
888
views
How to extract translated sequence of pol gene from a GenBank file
gene genbank genome sequence biopython
updated 4.4 years ago by 154k • written 4.4 years ago by • 0
1
vote
5
replies
2.6k
views
Liftover vcf file from hs37d5 assembly to b37 assembly
vcf liftover assembly
updated 4.1 years ago by ▴ 110 • written 4.4 years ago by ▴ 420
15
votes
7
replies
12k
views
7 follow
Negative Fst values in Lositan
SNP Fst Lositan
updated 5 months ago by ▴ 330 • written 10.6 years ago by ▴ 60
0
votes
3
replies
1.4k
views
Issue on downloading fastPHASE in Mac
fastPHASE
updated 4.4 years ago by 2.9k • written 5.2 years ago by ▴ 90
1
vote
2
replies
1.7k
views
How can I convert .ali file to FASTA format?
fasta ali
updated 2.6 years ago by 45k • written 4.4 years ago by ▴ 50
0
votes
0
replies
732
views
Classifying microbial community as pathogen, opportunistic pathogen, nonpathogen?
Microbes Classification
4.4 years ago by MSRS ▴ 590
0
votes
0
replies
696
views
Create gtf annotations to a fasta file, based on a similar known genome.
sequencing annotations fasta gtf
4.4 years ago by adi.rotem ▴ 20
0
votes
2
replies
1.1k
views
SNP Analysis
WGS bacteria SNP phenotype
2.8 years ago by ghs101 • 0
0
votes
3
replies
4.0k
views
RNA seq V2 mRNA calculation information from cBioportal
RNA-Seq
updated 4.4 years ago by 45k • written 7.1 years ago by ▴ 30
2
votes
8
replies
5.3k
views
RNA Seq V2 RSEM Data
RNA-Seq
updated 4.4 years ago by ★ 1.3k • written 6.2 years ago by • 0
0
votes
0
replies
709
views
Nucleotide Frequency - HOMER?
HOMER
4.4 years ago by kstangline ▴ 110
1
vote
1
reply
1.2k
views
Pindel Config File Error
software error
updated 4.4 years ago by • 0 • written 6.5 years ago by ▴ 10
1
vote
4
replies
1.6k
views
T-test analysis for gene expression comparison
RNA-seq
updated 4.4 years ago by ▴ 840 • written 4.4 years ago by ▴ 10
3
votes
5
replies
1.9k
views
Single cell analysis
TCGA R singlecellanalysis scRNAseq
4.4 years ago by leticia ▴ 20
8
votes
13
replies
3.7k
views
Snakemake and STARsolo
scRNA-seq snakemake Mapping STARsolo
updated 4.4 years ago by 45k • written 4.4 years ago by ▴ 10
4
votes
3
replies
4.0k
views
How to plot the heat map of a subset of cell types using plotHeatmap from scater package
scRNAseq scRNA SingleR plotHeatmap scater
4.4 years ago by FantasticAI ▴ 60
0
votes
0
replies
678
views
Querying the Pathway Commons API returns empty string
Interactions API Pathway Database Commons
4.4 years ago by abel_jansma • 0
2
votes
2
replies
1.1k
views
Bacterial Seq Alignment
Alignment Sequencing Bacteria
4.4 years ago by ravihansa82 ▴ 130
0
votes
0
replies
1.0k
views
Job: Opportunity: Bioinformatics Engineer - Bioinformatics Core @ Memorial Sloan Kettering Cancer Center, New York, NY (US)
cancer_biology Python R
updated 4.3 years ago by 45k • written 4.4 years ago by ▴ 10
4
votes
3
replies
3.3k
views
ERROR: Reference and target files have no markers in common in interval: 6:63979-21294564
beagle imputation
updated 4.4 years ago by ▴ 10 • written 5.2 years ago by ▴ 30
5
votes
7
replies
4.0k
views
Error in running miRDeep2
Whitespace miRDeep2 error
updated 2.8 years ago by 45k • written 4.5 years ago by • 0
0
votes
0
replies
1.4k
views
Remove cells from Seurat object based on gene expression of makers
rnaseq singlecell seurat scrna
4.4 years ago by ahmad mousavi ▴ 800
0
votes
0
replies
677
views
Difference in SNP number in the output of Poolfreqdiff and Popoolation2 using the same filters.
pool-seq
4.4 years ago by AGE ▴ 30
3
votes
5
replies
3.6k
views
Can someone help me install ambertools on mac OS?
Installation MacOS amber ambertools
updated 4.4 years ago by 89k • written 4.4 years ago by ▴ 10
1
vote
5
replies
3.3k
views
How do I filter a multi-individual BCF file for genotype probabilities
vcf bcf
2.7 years ago by devenvyas ▴ 770
1
vote
2
replies
2.9k
views
Merge Gene expression and Antibody capture data in Seurat
10x seurat
4.4 years ago by chi.delta ▴ 40
1
vote
1
reply
1.7k
views
Hypothetical protein from Prokka and mapping them on KEGG
kegg blastkoala hypothetical protein prokka
updated 4.4 years ago by ★ 30k • written 4.4 years ago by ▴ 70
0
votes
0
replies
855
views
EdgeR Alternative Splicing
RNA-seq EdgeR
4.4 years ago by wei.zhang • 0
121,993 results • Page 654 of 2440
Recent Votes
A: Trimmomatic Error: Unable to detect quality encoding
A: Trimmomatic Error: Unable to detect quality encoding
Answer: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
Answer: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
Answer: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
Answer: TMM-Normalization
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Answer: Pseudogene - scarce info by Mensur Dlakic ★ 30k
> The gene plays a pivotal role in some pathways of the immune response, but tbh I could'nt find any mention of my pseudogene on the linked…
Answer: SNP calling ONT sequenced files by cfos4698 ★ 1.2k
My personal preference is using [clair3][1]. I'm unsure if CLC didn't work because your compute resources are too limited, or if there are …
Comment: HIV NL4-3 transcriptome fasta by Ales ▴ 50
Hi, Wanted to update here that full transcriptome annotations for thousands of hiv genomes (including NL4-3) are now available at https://…
Answer: HIV NL4-3 transcriptome fasta by Ales ▴ 50
You can get full transcriptome annotation for the NL4-3 genomes: https://ccb.jhu.edu/HIV_Atlas/11676/AF324493.2 . Note the accession ID tho…
Answer: Doubt on docking by Mensur Dlakic ★ 30k
I think you are wrongly assuming that we can help you with this without knowing what is the protein of interest. A general answer is that …
Answer: Difficulty running FoldX in linux by Mensur Dlakic ★ 30k
The post looks much better now, so you did something. The preview here works fine. It simply can't be that the preview for your original po…
Comment: GUI commercial software for 10x single cell gene expression analysis by GenoMax 154k
Black box software has its cons but in instances like what OP needs that may be the only viable option. Their use limits reproducibility as…
Comment: downloading raw bam files from pacbio sequencer by GenoMax 154k
Have you checked : https://www.pacb.com/connect/datasets/
Comment: TMM-Normalization by kalavattam ▴ 380
No, but a modified version of TMM does: “GeTMM.” See the paper [here](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-0…
Comment: Difficulty running FoldX in linux by strayeroliver • 0
Responding to your answer. - I spent a lot of time formatting it just right, using the ``` methodology you mentioned. It looks very good o…
Comment: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions by Phil Ewels ★ 1.5k
Found the docs: https://www.nextflow.io/docs/latest/process.html#multiple-input-files | Arity | Name pattern | Staged file names | |---|--…
Comment: Dorado in PowerShell on Windows by jared.andrews07 ★ 19k
No more than running it on native Linux (as that's what WSL is at this point).
Answer: SNP calling ONT sequenced files by colindaven 8.0k
The quality of (modern, SUP basecalled, but certainly not fast basecalled) ONT sequences should be fine, especially for bacterial SNP call…
Comment: SNP calling ONT sequenced files by GenoMax 154k
What is the median length of raw reads and how many do you have? Has the data been basecalled with "high" or "super" accuracy? > I have …
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere by GenoMax 154k
This question is about simulating reads and not read mapping.
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