Limit : all time
all time today this week this month this year
122,200 results • Page 654 of 2444
Sort: Rank
Rank Views Votes Replies
4
votes
2
replies
1.1k
views
Select only protein coding Ensembl ID
R genes RNAseq EdgeR
4.5 years ago by sumitguptabt ▴ 30
0
votes
0
replies
665
views
How to simulate phenotype from two random multivariant normal distributed variable and calculate statistical power!
mvnorm simulation phenotype
4.5 years ago by gaaraqrq • 0
0
votes
0
replies
662
views
bedtools genomecov fractions not summing to 1
genomecov bedtools
4.5 years ago by maxrwjones ▴ 60
0
votes
0
replies
1.1k
views
Tool: IPC 2.0: prediction of isoelectric point and pKa dissociation constants
deep-learning isoelectric-point 2D-PAGE pKa
updated 2.4 years ago by 45k • written 4.5 years ago by • 0
2
votes
2
replies
1.1k
views
Why clusters look different in single nuclear RNA Seq.
snRNA clustering seurat
updated 4.5 years ago by ★ 90k • written 4.5 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Power calculation for RIP-seq
RIP-seq CHIP-seq
updated 4.5 years ago by 90k • written 4.5 years ago by ▴ 30
2
votes
2
replies
1.4k
views
TCGA samples
TCGA Samplestype
4.5 years ago by mrashad ▴ 80
1
vote
2
replies
1.3k
views
How can a mapping be performed without alignment?
mapping alignment genome map
updated 4.5 years ago by ▴ 730 • written 4.5 years ago by ▴ 20
13
votes
9
replies
4.5k
views
How to Write Loop For Trimming Every FastQ File Individually
Trimming Nanopore Fastq Rna-Seq
updated 4.5 years ago by 9.0k • written 4.5 years ago by ▴ 40
2
votes
3
replies
5.7k
views
Using Biopython to access MUSCLE
biopython alignment
updated 4.5 years ago by ▴ 10 • written 8.8 years ago by ▴ 10
0
votes
1
reply
1.8k
views
How to plot scaling curves for Hi-C data?
Hi-C
updated 4.5 years ago by • 0 • written 5.1 years ago by • 0
2
votes
6
replies
2.1k
views
ATAC-seq protocol stop-point check
ATAC-seq
4.5 years ago by Lord.Mor • 0
0
votes
1
reply
1.0k
views
Trying to use python regular expressions to filter fasta file sequence headers
filter fasta QC python read
updated 4.5 years ago by 21k • written 4.5 years ago by • 0
2
votes
2
replies
1.7k
views
Stop BWA mem trimming
fasta2sam BWA BWA-mem alignment
updated 4.4 years ago by 45k • written 4.5 years ago by • 0
0
votes
2
replies
1.2k
views
Error in vsd_adjusted_log2[rownames(subset(res, !is.na(padj) & padj < : subscript out of bounds
Rstudio DeSeq2 heatmap
4.5 years ago by mrinsmrids • 0
5
votes
3
replies
2.4k
views
PSSM from alignment
Alignment PSSM
4.5 years ago by Vladimir Leshuk ▴ 50
0
votes
0
replies
554
views
QTL for half-sib families
families QTL Half-sib SNPs
4.5 years ago by irenecobo88 • 0
0
votes
2
replies
1.5k
views
tximport for gene level summarization of 9 quant.sf files
salmon tximport rna-seq
updated 4.5 years ago by 45k • written 4.5 years ago by • 0
4
votes
6
replies
2.8k
views
Empty output file after trim primers with Cutadapt
cutadapt
updated 4.5 years ago by 45k • written 4.5 years ago by • 0
16
votes
13
replies
22k
views
9 follow
How to work out Z score for heatmaps for RNA seq dataset
R
updated 18 months ago by ▴ 10 • written 4.5 years ago by ▴ 30
0
votes
0
replies
803
views
Plant sRNA seq analysis pipelines
sRNA pipelines
updated 4.5 years ago by 45k • written 4.5 years ago by ▴ 10
2
votes
3
replies
1.2k
views
Read mapping statistics
phg
updated 4.5 years ago by 45k • written 4.5 years ago by • 0
3
votes
2
replies
2.1k
views
Nucleotide BLAST
BLAST
updated 4.5 years ago by 16k • written 4.5 years ago by ▴ 140
4
votes
7
replies
1.8k
views
Small RNA Seq Analysis for newcomers...
RNA-Seq
updated 4.5 years ago by ▴ 10 • written 5.8 years ago by ▴ 20
0
votes
0
replies
1.1k
views
How can I use PopGenome set.synnonsyn() function on whole genome vcf data?
vcf R set.synnonsyn synonymous-sites PopGenome
4.5 years ago by apc • 0
6
votes
6
replies
2.4k
views
Trimming an alignment around a given sequence
pairwise script crop alignment
4.5 years ago by QLFblaireau ▴ 30
0
votes
1
reply
963
views
Trimgalore for just R2
reads trimming trimgalore WGBS
updated 4.5 years ago by 154k • written 4.5 years ago by • 0
0
votes
1
reply
1.4k
views
dada2: plotQualityProfile - Error: IncompleteFinalRecord
r amplicon dada2
4.4 years ago by ben.tatton • 0
0
votes
1
reply
708
views
Network analysis issues
networkanalysis
updated 4.5 years ago by 11k • written 4.5 years ago by • 0
0
votes
11
replies
4.5k
views
Regression assumptions - fitted and residual plots
assumptions regression
updated 4.5 years ago by ▴ 30 • written 4.5 years ago by • 0
0
votes
0
replies
1.0k
views
Fisher's exact test for comparing TCR clonotype counts
R TCR-seq
4.5 years ago by pm2012 ▴ 140
0
votes
0
replies
764
views
Too few mutations to analyze MutSigCV
MutSigCV mutations
4.5 years ago by asmariyaz23 ▴ 10
1
vote
2
replies
1.5k
views
Download raw RNA-seq data from TCGA
TCGA RNA-seq
4.5 years ago by qwzhang0601 ▴ 80
0
votes
2
replies
1.1k
views
HOMER peak-motif relationship as direct-indirect binding
homermotif directbinding indirectbinding
4.5 years ago by buffealo ▴ 130
2
votes
2
replies
1.3k
views
Looking for COVID-19 patient sample FastQ/VCF files
WGS COVID-19 VCF WES Sequencing
updated 4.5 years ago by 90k • written 4.5 years ago by ▴ 20
6
votes
7
replies
9.5k
views
6 follow
Abyss Output File Formats
assembly abyss
updated 2.0 years ago by 45k • written 15.6 years ago by ▴ 540
0
votes
0
replies
1.0k
views
News: Cellosaurus release 38 is available
knowledgebase cell-line
updated 2.8 years ago by 45k • written 4.5 years ago by ▴ 140
2
votes
5
replies
2.1k
views
SHAPEIT v4 modify keep QUAL FORMAT and INFO field
shapeit phasing haplotype
4.5 years ago by nhaus ▴ 420
1
vote
1
reply
1.2k
views
MITOS2 and OH
annotation mitochondrial genome
4.5 years ago by James ▴ 10
2
votes
3
replies
1.5k
views
microarray , R package oligo and summarised level
R nicroarry oligo
4.5 years ago by chimerajit • 0
2
votes
3
replies
2.6k
views
Using log2(TPM/10+1) values in Seurat
10X Seurat R
updated 4.5 years ago by ★ 1.8k • written 4.5 years ago by ★ 4.4k
0
votes
0
replies
817
views
topTable doesn't have LogFc and B column
microarray DGE r topTable
4.5 years ago by xxxxxxxx ▴ 20
11
votes
11
replies
4.0k
views
How to interpret a FASTA file
Sequencing DNA
updated 4.5 years ago by 16k • written 4.5 years ago by ▴ 30
2
votes
3
replies
1.1k
views
How to create a percentage stack plot for unequal group size in R?
Rstudio Biostatistics Percentage Stackplot
updated 4.5 years ago by 21k • written 4.5 years ago by • 0
4
votes
7
replies
2.3k
views
Multi-factor Analysis in DeSEQ2
rnaseq r DESeq2
4.5 years ago by pthom010 ▴ 40
1
vote
7
replies
5.5k
views
WGCNA and SC-RNA Seq data
sc-RNA seq RNA-Seq wgcna
updated 4.5 years ago by ▴ 50 • written 5.5 years ago by ▴ 60
0
votes
2
replies
2.6k
views
Forum: Bioinformatics internship in Europe
europe internship
updated 4.5 years ago by • 0 • written 4.5 years ago by ▴ 70
0
votes
1
reply
989
views
Are [*.removed.sorted.bai] and [*.metrix.txt] needed for the next step?
removed.sorted.bai metrix.txt removed.sorted.bam
updated 4.5 years ago by 105k • written 4.5 years ago by • 0
0
votes
0
replies
663
views
Geno Ontology loader in Tripal
Tripal database GO
4.5 years ago by felipead66 ▴ 120
0
votes
0
replies
1.1k
views
SYS_ERROR when generating CGVIEW image in BRIG
genbank comparative error BRIG genomics
4.5 years ago by kira kira • 0
122,200 results • Page 654 of 2444
Recent Votes
Answer: Flatten a GTF
Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
Can EdgeR of DeSeq be used for Single-cell RNA-seq?
Answer: Getting the overlap between two GTF files
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
Converting GFF to GTF
Answer: best practice for diploid variant calling
Recent Locations • All
Iran, 2 minutes ago
Spain, 2 minutes ago
Germany, 4 minutes ago
China, 10 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 12 minutes ago
United Kingdom, 14 minutes ago
Hong Kong, 15 minutes ago
Recent Awards • All
Popular Question to Lila M ★ 1.3k
Teacher to dthorbur ★ 3.2k
Popular Question to colindaven 8.1k
Teacher to ATpoint 90k
Popular Question to san96 ▴ 190
Popular Question to RD ▴ 30
Popular Question to Wilber0x ▴ 70
Recent Replies
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria by thomas.heigl.ibk ▴ 10
thanks for the quick reply. i posted the screenshot. gatk-internally, there is still the difference using -ERC or not, priot is getting …
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria by thomas.heigl.ibk ▴ 10
here the igv view. showing the histogram for all samples plus the reads for one: ![enter image description here][1] and expanded view of …
Comment: low quality data or file name swapping -- cellranger arc errors when processing by Arup Ghosh 3.5k
Check the read lengths to make sure the files are correct.
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria by Pierre Lindenbaum 166k
> Any suggestions or help you could share please, show us an IGV screenshot of the position GATK realign the reads locally, discards read…
Comment: Can i use orthofinder for small protein datasets and not full proteome? by alexandrakortsi • 0
By sequence. Thank you for your response!
Comment: Why did the QV value decrease significantly after using YAHS for HiC scaffolding by xinguok794 ▴ 10
Thank you for your reply! Unfortunately, despite running YAHS with `--no-contig-ec`, the QV value of the resulting FASTA file did not impro…
Comment: Subsetting before QC in Spatial Transcriptomics by Kent ▴ 30
Hi Kevin, Thanks for the detailed explanation. Due to the characteristics of the datasets, we initially used very lenient quality control…
Comment: Midpoint rooting IQTREE newick file moves node support around by Luca Arbore ▴ 10
Thank you very much Kevin, it worked!
Comment: ID unifiying across different datasets by GenoMax 154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets by DrSmad ▴ 10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
Comment: snpEff: Unsupported structural variant types by shpak.max ▴ 70
Unfortunately, while it ran without a problem initially, when I checked the run screen today, I saw the following error message (and unlike…
Comment: ID unifiying across different datasets by GenoMax 154k
You can use the [**ID mapping tool**][1] from UniProt site (third ID did not map from the list above): From To P68104 ENSG0000015…
Answer: The geo samples is not having sentrix id and sentrix position. But this informat by yura.grabovska ▴ 890
Crosspost from related question: https://www.biostars.org/p/9616466/#9616534 ``` ##Using R, illuminaio from Bioconductor library(…
Answer: Finding Sentrix ID in HM450K arrays by yura.grabovska ▴ 890
``` ##Using R, illuminaio from Bioconductor library(illuminaio) temp.idat <- readIDAT(file = "200379120087_R02C02_Grn.idat") tem…
Traffic: 4144 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6