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Recent Replies
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Leela
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Please note that this is still a problem in the recent version in `conda` (v24.0)
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Completely understand. I hope this helps then!
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Impossible to answer with the little information you provided. It's like saying that your soufflé didn't rise, and we are supposed to guess…
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Please don't take my comment the wrong way.
Docking ligands is a serious endeavor that includes many preparatory steps, a use of highly so…
Comment: Problems with PacBio's Improved Phased Assembler (IPA)
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Thanks! I will try further downgrading snakemake (and python)..
Actually, I have already tried `hifiasm` which worked perfectly (as always…
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https://www.biostars.org/u/151541/ look through some of the top entries from this search for subread BAM's. Here is one example: https://do…
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I think `1ubq_Repair_1.pdb` is an intermediate file, and the other 3 files matter. But I use FoldX rarely, so you will have to verify this …
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That's great, @mensur. Thank you. I have a run that operates on 1ubq_Repair.pdb and produces a 'Dif_1ubq_Repair.fxout' now, even with numbe…
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Is there a reason you'd like to use IPA over, for instance, hifiasm? I'd recommend starting with hifiasm.
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This is very similar to your recent [post](https://www.biostars.org/p/9615406/) - if you aren't going to provide the protein example for a …
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1. When you said "the same dataset", are you sure about the files are the same, or you just mean the same list of patients? There are many …
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Try: https://www.google.com/search?q=site:https://downloads.pacbcloud.com/public/dataset/+%22subreads%22
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If they are not available at PacBio site then your chances of getting them are going to be significantly reduced. Only other source may be …
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Yes, I did check. They don't have any.
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