Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
122,004 results • Page
656 of 2441
Sort: Rank
Rank
Views
Votes
Replies
1
vote
2
replies
1.3k
views
bcftools isec outputs all variants instead of just the common variants
output
intersection
bcftools
isec
4.4 years ago by
fafad046
• 0
0
votes
0
replies
843
views
Problem with GATK VariantFiltration
gatk
snakemake
4.4 years ago by
kamanovae
▴ 100
0
votes
0
replies
705
views
Uniquely mapped reads on Bowtie for colorspace RNA-seq
uniquely
bowtie
RNA-seq
samtools
updated 4.4 years ago by
h.mon
35k • written 4.4 years ago by
IsiI
• 0
0
votes
1
reply
2.6k
views
GSEA analysis error: unable to find an inherited method for function ‘species’ for signature ‘"character"’
gsea
R
Bioconductor
updated 4.4 years ago by
zx8754
12k • written 4.4 years ago by
Jin
• 0
2
votes
4
replies
1.6k
views
RNA Seq
Isoform
Quantification
updated 4.4 years ago by
jared.andrews07
★ 19k • written 4.4 years ago by
shrinka.genetics
▴ 40
47
votes
21
replies
30k
views
14 follow
LD-decay in a r2 vs distance(cm) plot
R
snp
updated 4.3 years ago by
QPaps04
▴ 160 • written 7.6 years ago by
adele
▴ 80
2
votes
1
reply
2.4k
views
How to add missing residues using swissPDBviewer
protein
residues
swissPDB
updated 4.4 years ago by
Mensur Dlakic
★ 30k • written 4.4 years ago by
ranjuks641
▴ 10
0
votes
2
replies
1.4k
views
Computing multiple PRS on the fly with plink
prs
plink
updated 4.4 years ago by
zx8754
12k • written 4.4 years ago by
WD
• 0
1
vote
8
replies
3.7k
views
error in extracting one chromosome from multiple fasta files to a single fasta file
fasta
updated 4.4 years ago by
cpad0112
21k • written 4.4 years ago by
evafinegan
• 0
0
votes
1
reply
1.1k
views
ATAC-seq fragment length distribution wrong but data makes sense!
atac-seq
nucleosome
updated 4.4 years ago by
ATpoint
89k • written 4.4 years ago by
halffedelf
▴ 40
1
vote
3
replies
1.6k
views
Impute variants with the PHG. Pipeline and VCF final output for each sample
PHG
updated 4.4 years ago by
Ram
45k • written 4.5 years ago by
Miguel
▴ 10
2
votes
5
replies
3.0k
views
How can I use log2 RPM data(RNA-seq) to find differentially expressed genes?
log2RPM
RNA-seq
4.4 years ago by
Tommmm
• 0
1
vote
2
replies
1.0k
views
Batch correction on scRNA-Seq data
scRNA-Seq
4.4 years ago by
elb
▴ 260
2
votes
3
replies
1.6k
views
Differential abundance analysis for bulk TCR-seq data
enrichment
TCR
differential
DESEQ
4.4 years ago by
pm2012
▴ 140
0
votes
3
replies
1.9k
views
PLINK: ERROR: No nonmissing markers for individuals when using --cluster
vcf
cluster
genome
treemix
plink
updated 4.4 years ago by
chrchang523
11k • written 4.4 years ago by
hemr3
▴ 10
1
vote
1
reply
1.2k
views
Gene Expression Deconvolution - Rationale/Logic
RNA-Seq
gene expression
deconvolution
updated 4.4 years ago by
alicetondre
• 0 • written 5.8 years ago by
annaschumannuni
▴ 10
1
vote
5
replies
2.1k
views
EQTL FDR vs raw p-value
FUMA
EQTL
updated 4.4 years ago by
German.M.Demidov
★ 3.0k • written 4.4 years ago by
Filago
▴ 110
5
votes
4
replies
3.2k
views
Missing some output files for MultiQC
FastQC
MultiQC
RNA-Seq
4.4 years ago by
courtney.e.hershberger
▴ 10
2
votes
4
replies
1.6k
views
vlookup function using awk for two vcf files?
vcf
awk
vlookup
4.4 years ago by
Alexandros.Frydas
▴ 30
1
vote
1
reply
1.0k
views
heterozygosity
heterozygosity
updated 4.4 years ago by
4galaxy77
2.9k • written 4.4 years ago by
mimiloz
• 0
1
vote
1
reply
3.8k
views
scRNA-seq gene expressions from small number of cells
scRNA-seq
gene
expression
cells
updated 4.4 years ago by
jared.andrews07
★ 19k • written 4.4 years ago by
mvis1231
▴ 140
0
votes
0
replies
729
views
News:
Bayesian course using bmrs in R
statistics
R
Bayesian
bmrs
4.4 years ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
493
views
NAs in p-value result of GWAS association analysis
GWAS
4.4 years ago by
JFeng
• 0
8
votes
4
replies
2.5k
views
What are important questions before starting analysis of 10x scRNA-seq dataset
10x
scRNA-seq
updated 4.4 years ago by
GenoMax
154k • written 4.4 years ago by
mi
• 0
2
votes
3
replies
1.4k
views
Changing length of x axis on ggplot
r
ggplot
ggplot2
updated 4.4 years ago by
KH
▴ 100 • written 4.4 years ago by
salman_96
▴ 70
3
votes
1
reply
1.3k
views
VEP Disk Space
VEP
Ensembl
updated 4.4 years ago by
Emily
24k • written 4.4 years ago by
Filago
▴ 110
5
votes
3
replies
2.4k
views
quantile normalization in deseq2
quantile_normailzation
Deseq2
rna-seq
updated 4.4 years ago by
ATpoint
89k • written 4.4 years ago by
bioinfo456
▴ 150
0
votes
0
replies
912
views
Job:
Bioinformatician/Software Developer for Samplix R&D in Denmark
FluentEnglish
LinuxEnvironment
updated 4.3 years ago by
Ram
45k • written 4.4 years ago by
lgs
• 0
0
votes
1
reply
837
views
how to genrate fcgene pedinfo file
pedinfo
impute2
fcgene
4.4 years ago by
panmy2015
• 0
2
votes
3
replies
9.8k
views
cannot import name 'gcd' from 'fractions'
ubuntu
Linux
python
multiqc
updated 4.4 years ago by
Phil Ewels
★ 1.5k • written 4.5 years ago by
h.gaikani
• 0
0
votes
3
replies
2.5k
views
Gerp++ installation error
gerp
gerp++
SNP
gerp2
updated 4.4 years ago by
musha
• 0 • written 6.7 years ago by
Abdul Rafay Khan
★ 1.2k
0
votes
1
reply
954
views
What determine if a panel can be used for copy number analysis?
panel
copy
number
targeted
updated 4.4 years ago by
German.M.Demidov
★ 3.0k • written 4.4 years ago by
whb
▴ 60
2
votes
3
replies
1.8k
views
Need suggestions to combine the missense variants pathogenicity prediction scores generated by SIFT, CADD, REVEL, PolyPhen, MPC, etc. to prioritize/s…
Missense
PredictionTools
updated 4.3 years ago by
Ram
45k • written 4.4 years ago by
Apurba
▴ 10
1
vote
3
replies
2.3k
views
How to make a vcf file using GWAS Catalog all_association.tsv file
GWAS
VCF
genetic
association
CATALOG
updated 4.4 years ago by
Pierre Lindenbaum
166k • written 4.4 years ago by
Alexandros.Frydas
▴ 30
2
votes
2
replies
1.9k
views
gffread doesn't convert gff to gtf (blank file)
gffread
bash
updated 4.4 years ago by
Juke34
9.3k • written 4.4 years ago by
aka
▴ 10
0
votes
1
reply
1.1k
views
How to download dataset with paired 16S and shotgun from HMP?
16S
HMP
shotgun
4.4 years ago by
mail2steff
▴ 70
4
votes
10
replies
7.3k
views
how to use the samtools filtering expression ?
samtools
updated 2.6 years ago by
Ram
45k • written 4.4 years ago by
Hippolyte
• 0
0
votes
0
replies
610
views
Assemble 3'mRNAseq with standard RNAseq
stringtie
RNAseq
assembly
3mRNAseq
4.4 years ago by
Shred
★ 1.6k
1
vote
0
replies
994
views
News:
Comprehensive benchmarking of software for mapping whole genome bisulfite data
Methylation
NGS
Epigenetics
Bisulfite
4.4 years ago by
David Langenberger
11k
0
votes
2
replies
1.6k
views
Find all genes in multiple regions
ucsc
ensembl
biomart
updated 4.4 years ago by
Jorge Amigo
14k • written 4.4 years ago by
brighteyes1017
• 0
2
votes
4
replies
1.8k
views
How to capture the position of SNPs from the gene's locations
Bedtools
Genome
SNPs
4.4 years ago by
Kumar
▴ 170
0
votes
0
replies
557
views
Many OTUs on chart
bracken
Megan
biom
kraken
updated 4.4 years ago by
ATpoint
89k • written 4.4 years ago by
Geyby Tatiana
• 0
1
vote
1
reply
820
views
Can I Illumina sequence with a polymerase that leaves -da overgangs?
sequencing
illumina
updated 4.4 years ago by
ATpoint
89k • written 4.4 years ago by
jomagrax
▴ 40
3
votes
6
replies
5.0k
views
Bamtools stats and samtools flagstat produce different results and confusing my sambamba output.
sambamba
bamtools
samtools
4.4 years ago by
DNAngel
▴ 260
1
vote
1
reply
1.4k
views
Pathway network
Reactome
Pathway
cytoscape
KEGG
igraph
updated 4.4 years ago by
Jean-Karim Heriche
27k • written 4.4 years ago by
Arindam Ghosh
▴ 550
0
votes
0
replies
855
views
porthomcl - executing only the certain step of procedures
threading
porthomcl
orthomcl
thread
4.4 years ago by
seok1213neo
▴ 40
0
votes
1
reply
1.0k
views
Error in using USEARCH - Bad line 5 in FASTQ file 'sample_R1.fastq': expected '@'
input
usearch
fastq
fastqfile
updated 4.4 years ago by
Mensur Dlakic
★ 30k • written 4.4 years ago by
Yu
• 0
3
votes
1
reply
1.9k
views
how to define open-pangenome?
python
fasta
genome
dna
clustering
updated 4.4 years ago by
Nelly
▴ 30 • written 4.5 years ago by
Kumar
▴ 120
1
vote
3
replies
1.2k
views
edgeR batch correction
edger
batch
4.4 years ago by
barix
▴ 20
0
votes
0
replies
673
views
Code for simulation of data sets
simulation
updated 4.4 years ago by
Ram
45k • written 4.4 years ago by
lorenzo
• 0
122,004 results • Page
656 of 2441
Recent Votes
Answer: Recommendations for 200 SNP markers genotyping
Answer: Recommendations for 200 SNP markers genotyping
Comment: How to create a consensus of a contig with samtools or bbmap?
Answer: How to create a consensus of a contig with samtools or bbmap?
Answer: How to create a consensus of a contig with samtools or bbmap?
Difficulty running FoldX in linux
Answer: Difficulty running FoldX in linux
Recent Locations •
All
Finland,
just now
United Kingdom,
9 minutes ago
Munich,
11 minutes ago
Bologna,
13 minutes ago
France,
16 minutes ago
Portugal,
16 minutes ago
Machhagan,
18 minutes ago
Recent Awards •
All
Teacher
to
lieven.sterck
16k
Popular Question
to
carolofharvest
▴ 50
Popular Question
to
Physalia-courses
★ 2.6k
Centurion
to
Panos
★ 1.8k
Popular Question
to
crop
• 0
Popular Question
to
yarrowmadrona
▴ 10
Popular Question
to
Ram
45k
Recent Replies
Comment: DESeq2 on metagenome KO counts
by
young_bioinformatician
▴ 240
Thank you but sorry, your answer sounds very AI-based...
Answer: How to handle TrEMBL proteins without gene annotation in plasma proteomics?
by
Aleksandra
▴ 160
For basic analysis, discard anything that isn't from Swiss-Prot. Your statistics and pathway analysis should only be based on reliable, ann…
Answer: Recommendations for 200 SNP markers genotyping
by
Aleksandra
▴ 160
For a 200-SNP panel at your sample throughput, I would recommend an amplicon-based targeted sequencing approach. The workflow involves des…
Comment: Reasonable number of SNPs in a bacterial genome.
by
dthorbur
★ 3.1k
There are *a lot* of factors that can impact the number of identified SNPs. These include things like: - Evolutionary distance from samp…
Answer: DESeq2 on metagenome KO counts
by
Aleksandra
▴ 160
Your proposed workflow is indeed sound, as applying DESeq2 to KO-counts is perfectly valid; its underlying negative binomial model is metho…
Comment: Interpreting genomic features distribution for CUT&RUN peaks
by
Rozita
▴ 40
The massive difference has been reproducible across the 3 biological replicates and is in line with what we would expect in terms of the bi…
Answer: Interpreting genomic features distribution for CUT&RUN peaks
by
LChart
5.1k
My initial concern is the ~15-fold difference (450 vs 7500) between called peaks in the two different cell line conditions. This suggests t…
Comment: Recommendations for 200 SNP markers genotyping
by
Michael
56k
Which organism are you talking about, and are these markers fixed? You can search for existing genotyping options using this information. F…
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
PolenP
• 0
I tried Insilico seq as per your suggestion and it is really good. Unfortunately, it's taking more than 3 days to simulate 5x coverage of a…
Comment: hisat2 error-Paired end reads not equal or lack of RAM/disk space?
by
lieven.sterck
16k
How did you get to these un-synced files? aka, what was your previous step in this analysis? I'm asking, as usually you need to make sure …
Comment: Problems with PacBio's Improved Phased Assembler (IPA)
by
Panos
★ 1.8k
Just so others know (in case they try) downgrading snakemake/python didn't work for me. In fact, I tried a number of different combinations…
Comment: headers missing in efetch results for SRA database
by
Leela
• 0
Please note that this is still a problem in the recent version in `conda` (v24.0)
Comment: Difficulty running FoldX in linux
by
strayeroliver
• 0
Thank you very much for your help.
Comment: Problems with PacBio's Improved Phased Assembler (IPA)
by
Billy Rowell
▴ 520
Completely understand. I hope this helps then!
Comment: Active site using castpfold
by
Mensur Dlakic
★ 30k
Please don't take my comment the wrong way. Docking ligands is a serious endeavor that includes many preparatory steps, a use of highly so…
Traffic: 7676 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6