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122,200 results • Page
657 of 2444
Sort: Rank
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Views
Votes
Replies
0
votes
1
reply
2.9k
views
Plink bim from bgen
bgen
plink2
bgenie
plink
4.5 years ago by
meggo
• 0
1
vote
1
reply
711
views
What is hg19_random
Hg19
updated 4.5 years ago by
Pierre Lindenbaum
166k • written 4.5 years ago by
afollette
• 0
0
votes
1
reply
992
views
how to import multiple fastq files from NCBI without using fastq-dump?
curl
wget
multi-samples
importing
updated 4.5 years ago by
GenoMax
154k • written 4.5 years ago by
v.berriosfarias
▴ 140
0
votes
2
replies
1.3k
views
Any text mining tool?
text-mining
meta-analysis
4.5 years ago by
seta
★ 1.9k
8
votes
9
replies
4.5k
views
Extract reads overlapping a specific region in bam file
awk
samtools
updated 3.6 years ago by
hopf
▴ 10 • written 4.5 years ago by
User000
▴ 750
9
votes
3
replies
1.2k
views
How to use directories as index of a vector?
R
updated 4.5 years ago by
zx8754
12k • written 4.5 years ago by
Fede_Santos95
▴ 20
1
vote
1
reply
994
views
Multiple Entity Id for same file in GDC
GDC
updated 4.5 years ago by
Zhenyu Zhang
★ 1.3k • written 4.5 years ago by
matcap97
• 0
0
votes
0
replies
772
views
News:
RNA sequencing data with R/Bioconductor
R
Bioconductor
RNAseq
4.5 years ago by
Physalia-courses
★ 2.7k
1
vote
3
replies
1.8k
views
trouble converting imputev2 files to vcf file
conversion
vcf
shapeit
imputev2
updated 4.5 years ago by
Ram
45k • written 4.5 years ago by
SHN
▴ 40
7
votes
6
replies
5.1k
views
Optical duplicates?
duplicate
optical
updated 3.7 years ago by
flyamer
▴ 60 • written 4.5 years ago by
abascalfederico
★ 1.2k
0
votes
3
replies
1.3k
views
Combining distance matricies between multiple aligned genes into final distance matrix
phylogeny
distance
alignment
4.5 years ago by
robert.murphy
▴ 110
0
votes
1
reply
636
views
what is the difference between a protein GWAS and pQTL study? are they the same thing
GWAS
pQTL
updated 4.5 years ago by
i.sudbery
22k • written 4.5 years ago by
tanghaotian1234567
• 0
0
votes
0
replies
746
views
AAI Matrix
R
CompareM
Matrix
AAI
4.5 years ago by
matthewcrossie
• 0
0
votes
0
replies
943
views
Job:
Full-Stack-Developer with knowledge of managing biological data
visualization
biotech
fullstack
data
python
4.5 years ago by
D4office
• 0
0
votes
0
replies
1.1k
views
GTDBTk - align step error in hmm file
align
hmm
GTDBTK
4.5 years ago by
seok1213neo
▴ 40
0
votes
1
reply
745
views
Functional annotation of bacterial genes
prokaryotes
bacteria
annotation
kegg
updated 4.5 years ago by
GenoMax
154k • written 4.5 years ago by
SeroroO
▴ 50
2
votes
4
replies
1.4k
views
how to find homology in DNA regios
coordinates
homology
sequences
blast
4.5 years ago by
Lila M
★ 1.3k
0
votes
3
replies
2.1k
views
Problem to convert genotypes to plink format from bcftools
vcf
bcftools
ped
plink
beagle
updated 2.7 years ago by
Manuel Ramón
▴ 10 • written 4.5 years ago by
Alejandro
▴ 10
1
vote
3
replies
1.4k
views
Normalizing across multiple RNA-seq datasets
RNASeq
normalization
updated 4.5 years ago by
i.sudbery
22k • written 4.5 years ago by
Gene_MMP8
▴ 250
2
votes
2
replies
1.5k
views
How to map metatranscriptomics reads to a given genome (unannotated genome assembly)?
mapping
genome
alignment
metatranscriptomics
4.5 years ago by
mrj
▴ 180
1
vote
4
replies
1.5k
views
Matching genes between two lists are return to txt file
Python
BioPython
updated 2.7 years ago by
Ram
45k • written 4.5 years ago by
ran
• 0
0
votes
0
replies
1.8k
views
Job:
Scientist/Sr. Scientist – Data Science (m/f/d)
Data-Integration
Statistics
updated 2.5 years ago by
Ram
45k • written 4.5 years ago by
A. Domingues
★ 2.7k
0
votes
1
reply
678
views
Trying to write something on r, it is written in strange font.
console
R
weird
updated 4.5 years ago by
Nitin Narwade
★ 1.7k • written 4.5 years ago by
chloe
• 0
3
votes
6
replies
5.2k
views
Statistics analysis of assembled genome from PacBio HiFi reads using Hifiasm
ccs
gfa
pacbio
contigs
hifiasm
updated 4.5 years ago by
Dave Carlson
★ 2.2k • written 4.5 years ago by
K
▴ 10
3
votes
1
reply
5.5k
views
Comparison of module expression across WGCNA networks
WGCNA
Transcriptomics
updated 4.5 years ago by
Kevin Blighe
★ 90k • written 9.0 years ago by
dmcleanuk
▴ 30
2
votes
2
replies
4.3k
views
WGCNA cannot be done to compare two conditions?
WGCNA
RNA-Seq
rna-seq
updated 4.5 years ago by
Kevin Blighe
★ 90k • written 6.5 years ago by
galiciaa
• 0
1
vote
0
replies
935
views
Job:
Statistician needed for remote/freelance work $120ph
statistics
updated 2.5 years ago by
Ram
45k • written 4.5 years ago by
august.felix
▴ 10
0
votes
0
replies
840
views
Where to find TCGA hg38 WXS coverage per sample
TCGA
WXS
coverage
4.5 years ago by
rebeliscu
▴ 60
8
votes
12
replies
7.3k
views
is it .impute2 format equal to .gen format
imputation
impute2
qctool
updated 4.5 years ago by
SHN
▴ 40 • written 8.4 years ago by
Peter Chung
▴ 210
0
votes
0
replies
793
views
Considering aneuploidy, ploidy, and CNV when performing ABHet filtering on VCF files
Aneuploidy
VCF
Filtering
CNV
ABHet
4.5 years ago by
Jackson
• 0
0
votes
4
replies
1.4k
views
over 900 million bases in CCDS regions?
CCDS
updated 4.5 years ago by
Ram
45k • written 4.5 years ago by
YL
▴ 10
0
votes
4
replies
1.3k
views
How to print coordinates in continuous manner
outfmt
blast
4.5 years ago by
K
▴ 10
0
votes
8
replies
2.3k
views
How to compare data in two files and print matching data of file1 and file2
Genome
Match
SNPs
updated 4.5 years ago by
GenoMax
154k • written 4.5 years ago by
Kumar
▴ 170
38
votes
18
replies
17k
views
9 follow
How to identify 16s sequences from binning data(contigs)?
genome
Assembly
sequence
blast
updated 7 months ago by
Brian Bushnell
20k • written 10.2 years ago by
liuyifan2014
▴ 110
0
votes
5
replies
1.4k
views
Print rows where the columns have a specific condition
awk
linux
bash
updated 4.5 years ago by
cpad0112
21k • written 4.5 years ago by
vanessagpds
▴ 10
0
votes
3
replies
1.9k
views
Mitochondrial sequence data analysis
Sequencing
RNA
4.5 years ago by
bandanaschapagain
▴ 40
1
vote
3
replies
1.5k
views
Issue with Trimmomatic "Unknown Trimmer"
Illumina
Trimmomatic
Transcriptomics
updated 4.5 years ago by
GenoMax
154k • written 4.5 years ago by
Jake
• 0
0
votes
0
replies
1.0k
views
Job:
Informatician / Data Analyst | University of Glasgow
scotland
data-analyst
updated 2.5 years ago by
Ram
45k • written 4.5 years ago by
dariober
15k
1
vote
0
replies
1.5k
views
I use SingleR to get cell type annotation for each cell, then try to annotate each cluster, but the clustering result seems not to be consistent with…
SingleR
scRNAseq
4.5 years ago by
FantasticAI
▴ 60
1
vote
2
replies
6.5k
views
fastq.gz unexpected end of file: Can this be fixed?
corrup
fastq
updated 4.5 years ago by
GenoMax
154k • written 4.5 years ago by
rebeliscu
▴ 60
3
votes
5
replies
14k
views
pheatmap: how to avoid fontface, fontsize, and color from writing over existing rownames
fontsize
rows
color
R
pheatmap
updated 4.5 years ago by
cpad0112
21k • written 4.5 years ago by
ladypurrsia
▴ 60
1
vote
4
replies
3.0k
views
How to calculate differential methylation from nanopore reads?
sequencing
methylation
4.5 years ago by
O.rka
▴ 750
0
votes
0
replies
606
views
Looking for an Amino Acid Level Variant Caller
Amino-Acid
Fastq
VCF
Variant-Calling
updated 2.1 years ago by
Ram
45k • written 4.5 years ago by
cjg9101112
• 0
1
vote
3
replies
3.2k
views
Size factor between bcl and fastq
bcl
NGS
Illumina
Fastq
updated 4.5 years ago by
Arup Ghosh
3.5k • written 4.5 years ago by
Michael
▴ 290
5
votes
7
replies
4.4k
views
deeptools 3.5 Segmentation fault:11
NGS
deepTools
ChIP
Illumina
updated 4.5 years ago by
Devon Ryan
105k • written 4.5 years ago by
jjp55
▴ 20
0
votes
1
reply
1.6k
views
ENSEMBL VEP custom annotation with GFF file
variant
vep
annotation
custom
updated 4.5 years ago by
Emily
24k • written 4.5 years ago by
gdm01
• 0
0
votes
2
replies
1.6k
views
Integrating two Seurat multimodal objects
scRNA-seq
Seurat
R
10X
4.5 years ago by
roberts
▴ 60
3
votes
3
replies
5.8k
views
TPM to differential expression
RNA-seq
updated 4.5 years ago by
rpolicastro
13k • written 4.5 years ago by
pramodkhadka69
• 0
2
votes
2
replies
1.7k
views
tools for calculating nucleotide composition of a gene
NGS
4.5 years ago by
xiaoleiusc
▴ 140
1
vote
4
replies
1.8k
views
Mutation hunting in 100 exome samples
vcf
R
mutations
updated 4.5 years ago by
lakhujanivijay
5.9k • written 4.5 years ago by
soniabedi.07
▴ 30
122,200 results • Page
657 of 2444
Recent Votes
strong appearing variant not found by haplotypecaller in -ERC mode and deepvariant but with haplotypecaller in normal mode
Answer: How can I easily remove overlapping transcripts, keeping only longest transcript
Answer: Log2 transformation is well used, but is there a good paper that can be used as
Answer: Flatten a GTF
Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
Can EdgeR of DeSeq be used for Single-cell RNA-seq?
Answer: Getting the overlap between two GTF files
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Recent Replies
Comment: ID unifiying across different datasets
by
zizigolu
★ 4.4k
Thanks a lot to be helpful I’m trying to build a complete `UniProtID` to `GeneSymbol` lookup table and I’m running into a wall. I’ve alrea…
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
thomas.heigl.ibk
▴ 20
thanks for the quick reply. i posted the screenshot. gatk-internally, there is still the difference using -ERC or not, priot is getting …
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
thomas.heigl.ibk
▴ 20
here the igv view. showing the histogram for all samples plus the reads for one: ![enter image description here][1] and expanded view of …
Comment: low quality data or file name swapping -- cellranger arc errors when processing
by
Arup Ghosh
3.5k
Check the read lengths to make sure the files are correct.
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
Pierre Lindenbaum
166k
> Any suggestions or help you could share please, show us an IGV screenshot of the position GATK realign the reads locally, discards read…
Comment: Can i use orthofinder for small protein datasets and not full proteome?
by
alexandrakortsi
• 0
By sequence. Thank you for your response!
Comment: Why did the QV value decrease significantly after using YAHS for HiC scaffolding
by
xinguok794
▴ 10
Thank you for your reply! Unfortunately, despite running YAHS with `--no-contig-ec`, the QV value of the resulting FASTA file did not impro…
Comment: Subsetting before QC in Spatial Transcriptomics
by
Kent
▴ 30
Hi Kevin, Thanks for the detailed explanation. Due to the characteristics of the datasets, we initially used very lenient quality control…
Comment: Midpoint rooting IQTREE newick file moves node support around
by
Luca Arbore
▴ 10
Thank you very much Kevin, it worked!
Comment: ID unifiying across different datasets
by
GenoMax
154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets
by
DrSmad
▴ 10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
Comment: ID unifiying across different datasets
by
zizigolu
★ 4.4k
sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
Comment: snpEff: Unsupported structural variant types
by
shpak.max
▴ 70
Unfortunately, while it ran without a problem initially, when I checked the run screen today, I saw the following error message (and unlike…
Comment: ID unifiying across different datasets
by
GenoMax
154k
You can use the [**ID mapping tool**][1] from UniProt site (third ID did not map from the list above): From To P68104 ENSG0000015…
Answer: The geo samples is not having sentrix id and sentrix position. But this informat
by
yura.grabovska
▴ 890
Crosspost from related question: https://www.biostars.org/p/9616466/#9616534 ``` ##Using R, illuminaio from Bioconductor library(…
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