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122,200 results • Page 657 of 2444
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2.9k
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Plink bim from bgen
bgen plink2 bgenie plink
4.5 years ago by meggo • 0
1
vote
1
reply
711
views
What is hg19_random
Hg19
updated 4.5 years ago by 166k • written 4.5 years ago by • 0
0
votes
1
reply
992
views
how to import multiple fastq files from NCBI without using fastq-dump?
curl wget multi-samples importing
updated 4.5 years ago by 154k • written 4.5 years ago by ▴ 140
0
votes
2
replies
1.3k
views
Any text mining tool?
text-mining meta-analysis
4.5 years ago by seta ★ 1.9k
8
votes
9
replies
4.5k
views
Extract reads overlapping a specific region in bam file
awk samtools
updated 3.6 years ago by ▴ 10 • written 4.5 years ago by ▴ 750
9
votes
3
replies
1.2k
views
How to use directories as index of a vector?
R
updated 4.5 years ago by 12k • written 4.5 years ago by ▴ 20
1
vote
1
reply
994
views
Multiple Entity Id for same file in GDC
GDC
updated 4.5 years ago by ★ 1.3k • written 4.5 years ago by • 0
0
votes
0
replies
772
views
News: RNA sequencing data with R/Bioconductor
R Bioconductor RNAseq
4.5 years ago by Physalia-courses ★ 2.7k
1
vote
3
replies
1.8k
views
trouble converting imputev2 files to vcf file
conversion vcf shapeit imputev2
updated 4.5 years ago by 45k • written 4.5 years ago by ▴ 40
7
votes
6
replies
5.1k
views
Optical duplicates?
duplicate optical
updated 3.7 years ago by ▴ 60 • written 4.5 years ago by ★ 1.2k
0
votes
3
replies
1.3k
views
Combining distance matricies between multiple aligned genes into final distance matrix
phylogeny distance alignment
4.5 years ago by robert.murphy ▴ 110
0
votes
1
reply
636
views
what is the difference between a protein GWAS and pQTL study? are they the same thing
GWAS pQTL
updated 4.5 years ago by 22k • written 4.5 years ago by • 0
0
votes
0
replies
746
views
AAI Matrix
R CompareM Matrix AAI
4.5 years ago by matthewcrossie • 0
0
votes
0
replies
943
views
Job: Full-Stack-Developer with knowledge of managing biological data
visualization biotech fullstack data python
4.5 years ago by D4office • 0
0
votes
0
replies
1.1k
views
GTDBTk - align step error in hmm file
align hmm GTDBTK
4.5 years ago by seok1213neo ▴ 40
0
votes
1
reply
745
views
Functional annotation of bacterial genes
prokaryotes bacteria annotation kegg
updated 4.5 years ago by 154k • written 4.5 years ago by ▴ 50
2
votes
4
replies
1.4k
views
how to find homology in DNA regios
coordinates homology sequences blast
4.5 years ago by Lila M ★ 1.3k
0
votes
3
replies
2.1k
views
Problem to convert genotypes to plink format from bcftools
vcf bcftools ped plink beagle
updated 2.7 years ago by ▴ 10 • written 4.5 years ago by ▴ 10
1
vote
3
replies
1.4k
views
Normalizing across multiple RNA-seq datasets
RNASeq normalization
updated 4.5 years ago by 22k • written 4.5 years ago by ▴ 250
2
votes
2
replies
1.5k
views
How to map metatranscriptomics reads to a given genome (unannotated genome assembly)?
mapping genome alignment metatranscriptomics
4.5 years ago by mrj ▴ 180
1
vote
4
replies
1.5k
views
Matching genes between two lists are return to txt file
Python BioPython
updated 2.7 years ago by 45k • written 4.5 years ago by • 0
0
votes
0
replies
1.8k
views
Job: Scientist/Sr. Scientist – Data Science (m/f/d)
Data-Integration Statistics
updated 2.5 years ago by 45k • written 4.5 years ago by ★ 2.7k
0
votes
1
reply
678
views
Trying to write something on r, it is written in strange font.
console R weird
updated 4.5 years ago by ★ 1.7k • written 4.5 years ago by • 0
3
votes
6
replies
5.2k
views
Statistics analysis of assembled genome from PacBio HiFi reads using Hifiasm
ccs gfa pacbio contigs hifiasm
updated 4.5 years ago by ★ 2.2k • written 4.5 years ago by ▴ 10
3
votes
1
reply
5.5k
views
Comparison of module expression across WGCNA networks
WGCNA Transcriptomics
updated 4.5 years ago by ★ 90k • written 9.0 years ago by ▴ 30
2
votes
2
replies
4.3k
views
WGCNA cannot be done to compare two conditions?
WGCNA RNA-Seq rna-seq
updated 4.5 years ago by ★ 90k • written 6.5 years ago by • 0
1
vote
0
replies
935
views
Job: Statistician needed for remote/freelance work $120ph
statistics
updated 2.5 years ago by 45k • written 4.5 years ago by ▴ 10
0
votes
0
replies
840
views
Where to find TCGA hg38 WXS coverage per sample
TCGA WXS coverage
4.5 years ago by rebeliscu ▴ 60
8
votes
12
replies
7.3k
views
is it .impute2 format equal to .gen format
imputation impute2 qctool
updated 4.5 years ago by ▴ 40 • written 8.4 years ago by ▴ 210
0
votes
0
replies
793
views
Considering aneuploidy, ploidy, and CNV when performing ABHet filtering on VCF files
Aneuploidy VCF Filtering CNV ABHet
4.5 years ago by Jackson • 0
0
votes
4
replies
1.4k
views
over 900 million bases in CCDS regions?
CCDS
updated 4.5 years ago by 45k • written 4.5 years ago by ▴ 10
0
votes
4
replies
1.3k
views
How to print coordinates in continuous manner
outfmt blast
4.5 years ago by K ▴ 10
0
votes
8
replies
2.3k
views
How to compare data in two files and print matching data of file1 and file2
Genome Match SNPs
updated 4.5 years ago by 154k • written 4.5 years ago by ▴ 170
38
votes
18
replies
17k
views
9 follow
How to identify 16s sequences from binning data(contigs)?
genome Assembly sequence blast
updated 7 months ago by 20k • written 10.2 years ago by ▴ 110
0
votes
5
replies
1.4k
views
Print rows where the columns have a specific condition
awk linux bash
updated 4.5 years ago by 21k • written 4.5 years ago by ▴ 10
0
votes
3
replies
1.9k
views
Mitochondrial sequence data analysis
Sequencing RNA
4.5 years ago by bandanaschapagain ▴ 40
1
vote
3
replies
1.5k
views
Issue with Trimmomatic "Unknown Trimmer"
Illumina Trimmomatic Transcriptomics
updated 4.5 years ago by 154k • written 4.5 years ago by • 0
0
votes
0
replies
1.0k
views
Job: Informatician / Data Analyst | University of Glasgow
scotland data-analyst
updated 2.5 years ago by 45k • written 4.5 years ago by 15k
1
vote
0
replies
1.5k
views
I use SingleR to get cell type annotation for each cell, then try to annotate each cluster, but the clustering result seems not to be consistent with…
SingleR scRNAseq
4.5 years ago by FantasticAI ▴ 60
1
vote
2
replies
6.5k
views
fastq.gz unexpected end of file: Can this be fixed?
corrup fastq
updated 4.5 years ago by 154k • written 4.5 years ago by ▴ 60
3
votes
5
replies
14k
views
pheatmap: how to avoid fontface, fontsize, and color from writing over existing rownames
fontsize rows color R pheatmap
updated 4.5 years ago by 21k • written 4.5 years ago by ▴ 60
1
vote
4
replies
3.0k
views
How to calculate differential methylation from nanopore reads?
sequencing methylation
4.5 years ago by O.rka ▴ 750
0
votes
0
replies
606
views
Looking for an Amino Acid Level Variant Caller
Amino-Acid Fastq VCF Variant-Calling
updated 2.1 years ago by 45k • written 4.5 years ago by • 0
1
vote
3
replies
3.2k
views
Size factor between bcl and fastq
bcl NGS Illumina Fastq
updated 4.5 years ago by 3.5k • written 4.5 years ago by ▴ 290
5
votes
7
replies
4.4k
views
deeptools 3.5 Segmentation fault:11
NGS deepTools ChIP Illumina
updated 4.5 years ago by 105k • written 4.5 years ago by ▴ 20
0
votes
1
reply
1.6k
views
ENSEMBL VEP custom annotation with GFF file
variant vep annotation custom
updated 4.5 years ago by 24k • written 4.5 years ago by • 0
0
votes
2
replies
1.6k
views
Integrating two Seurat multimodal objects
scRNA-seq Seurat R 10X
4.5 years ago by roberts ▴ 60
3
votes
3
replies
5.8k
views
TPM to differential expression
RNA-seq
updated 4.5 years ago by 13k • written 4.5 years ago by • 0
2
votes
2
replies
1.7k
views
tools for calculating nucleotide composition of a gene
NGS
4.5 years ago by xiaoleiusc ▴ 140
1
vote
4
replies
1.8k
views
Mutation hunting in 100 exome samples
vcf R mutations
updated 4.5 years ago by 5.9k • written 4.5 years ago by ▴ 30
122,200 results • Page 657 of 2444
Recent Votes
strong appearing variant not found by haplotypecaller in -ERC mode and deepvariant but with haplotypecaller in normal mode
Answer: How can I easily remove overlapping transcripts, keeping only longest transcript
Answer: Log2 transformation is well used, but is there a good paper that can be used as
Answer: Flatten a GTF
Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
Can EdgeR of DeSeq be used for Single-cell RNA-seq?
Answer: Getting the overlap between two GTF files
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Recent Replies
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
Thanks a lot to be helpful I’m trying to build a complete `UniProtID` to `GeneSymbol` lookup table and I’m running into a wall. I’ve alrea…
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria by thomas.heigl.ibk ▴ 20
thanks for the quick reply. i posted the screenshot. gatk-internally, there is still the difference using -ERC or not, priot is getting …
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria by thomas.heigl.ibk ▴ 20
here the igv view. showing the histogram for all samples plus the reads for one: ![enter image description here][1] and expanded view of …
Comment: low quality data or file name swapping -- cellranger arc errors when processing by Arup Ghosh 3.5k
Check the read lengths to make sure the files are correct.
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria by Pierre Lindenbaum 166k
> Any suggestions or help you could share please, show us an IGV screenshot of the position GATK realign the reads locally, discards read…
Comment: Can i use orthofinder for small protein datasets and not full proteome? by alexandrakortsi • 0
By sequence. Thank you for your response!
Comment: Why did the QV value decrease significantly after using YAHS for HiC scaffolding by xinguok794 ▴ 10
Thank you for your reply! Unfortunately, despite running YAHS with `--no-contig-ec`, the QV value of the resulting FASTA file did not impro…
Comment: Subsetting before QC in Spatial Transcriptomics by Kent ▴ 30
Hi Kevin, Thanks for the detailed explanation. Due to the characteristics of the datasets, we initially used very lenient quality control…
Comment: Midpoint rooting IQTREE newick file moves node support around by Luca Arbore ▴ 10
Thank you very much Kevin, it worked!
Comment: ID unifiying across different datasets by GenoMax 154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets by DrSmad ▴ 10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
Comment: snpEff: Unsupported structural variant types by shpak.max ▴ 70
Unfortunately, while it ran without a problem initially, when I checked the run screen today, I saw the following error message (and unlike…
Comment: ID unifiying across different datasets by GenoMax 154k
You can use the [**ID mapping tool**][1] from UniProt site (third ID did not map from the list above): From To P68104 ENSG0000015…
Answer: The geo samples is not having sentrix id and sentrix position. But this informat by yura.grabovska ▴ 890
Crosspost from related question: https://www.biostars.org/p/9616466/#9616534 ``` ##Using R, illuminaio from Bioconductor library(…
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